Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7420
Gene name
Locationscaffold_713:4479..5278
Strand-
Gene length (bp)799
Transcript length (bp)744
Coding sequence length (bp)741
Protein length (aa) 247

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 15 34 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 1.62 0.00 3.46
CcL In ants, during behavior modification 29.81 12.25 47.38
CcD In ants, recently dead 12.71 3.95 21.48

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000770 yes
CcL CcD 0.004810 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7420
MAIFFIGWELWQDMTFVLACCILLVFLVGVFKLWWTNRRLRKYEVIEEERRARLTEMRHCGIDRMHRDAIPFGVR
ALESGVEVEGIWVSRSNTPVHDPKGKEKMVAVSSPLNDGQNHAGSSGASVDGDPLSLSPDESRHVRRSARLTRPR
RSRPPSGSHVPPSLIMASHDNDFPRDAAPYGATEVYANTRLRTATPGFDLLPARVLSPRQGSLDPSTDVEQGRVP
PASPPPSSKPGQPSKLRKKPKA
Coding >Ophio5|7420
ATGGCCATCTTCTTCATTGGCTGGGAGCTGTGGCAGGACATGACGTTTGTCCTCGCCTGCTGCATCCTCCTCGTC
TTCCTCGTCGGCGTCTTCAAGCTTTGGTGGACGAACCGCCGGCTGCGCAAGTACGAAGTCATCGAAGAGGAGCGT
CGTGCCCGTCTCACCGAGATGCGTCACTGTGGCATCGATCGCATGCATCGCGATGCCATCCCCTTTGGCGTTCGC
GCCCTCGAGAGTGGCGTCGAGGTTGAGGGCATCTGGGTTTCGCGCTCTAATACGCCCGTCCACGACCCCAAGGGC
AAGGAGAAGATGGTGGCCGTGTCGTCGCCGCTCAACGACGGTCAGAATCACGCCGGCTCGTCGGGCGCTTCTGTT
GATGGAGACCCGTTGTCCTTGTCGCCTGACGAGTCGCGCCATGTCCGCCGCTCAGCCCGTCTGACACGCCCGCGC
CGTTCACGTCCGCCATCCGGCTCGCATGTGCCGCCGTCTCTCATCATGGCATCCCACGATAATGATTTTCCTCGA
GATGCTGCTCCCTATGGCGCGACCGAGGTATACGCCAACACCAGGTTGAGGACCGCTACCCCCGGTTTCGACCTT
CTTCCCGCCCGTGTCCTGAGTCCAAGACAAGGATCTTTGGACCCAAGCACCGATGTCGAGCAGGGTCGTGTGCCG
CCTGCCAGCCCTCCGCCTTCATCCAAACCAGGCCAGCCTTCAAAACTTCGCAAGAAGCCAAAAGCT
Transcript >Ophio5|7420
ATGGCCATCTTCTTCATTGGCTGGGAGCTGTGGCAGGACATGACGTTTGTCCTCGCCTGCTGCATCCTCCTCGTC
TTCCTCGTCGGCGTCTTCAAGCTTTGGTGGACGAACCGCCGGCTGCGCAAGTACGAAGTCATCGAAGAGGAGCGT
CGTGCCCGTCTCACCGAGATGCGTCACTGTGGCATCGATCGCATGCATCGCGATGCCATCCCCTTTGGCGTTCGC
GCCCTCGAGAGTGGCGTCGAGGTTGAGGGCATCTGGGTTTCGCGCTCTAATACGCCCGTCCACGACCCCAAGGGC
AAGGAGAAGATGGTGGCCGTGTCGTCGCCGCTCAACGACGGTCAGAATCACGCCGGCTCGTCGGGCGCTTCTGTT
GATGGAGACCCGTTGTCCTTGTCGCCTGACGAGTCGCGCCATGTCCGCCGCTCAGCCCGTCTGACACGCCCGCGC
CGTTCACGTCCGCCATCCGGCTCGCATGTGCCGCCGTCTCTCATCATGGCATCCCACGATAATGATTTTCCTCGA
GATGCTGCTCCCTATGGCGCGACCGAGGTATACGCCAACACCAGGTTGAGGACCGCTACCCCCGGTTTCGACCTT
CTTCCCGCCCGTGTCCTGAGTCCAAGACAAGGATCTTTGGACCCAAGCACCGATGTCGAGCAGGGTCGTGTGCCG
CCTGCCAGCCCTCCGCCTTCATCCAAACCAGGCCAGCCTTCAAAACTTCGCAAGAAGCCAAAAGCTTGA
Gene >Ophio5|7420
ATGGCCATCTTCTTCATTGGCTGGGAGCTGTGGCAGGACATGACGTTTGTGAGACGTCCGTCCCCTCCCGTGACG
TGACGGCCGGTAGTTCTGACCTCATCAGGTCCTCGCCTGCTGCATCCTCCTCGTCTTCCTCGTCGGCGTCTTCAA
GCTTTGGTGGACGAACCGCCGGCTGCGCAAGTACGAAGTCATCGAAGAGGAGCGTCGTGCCCGTCTCACCGAGAT
GCGTCACTGTGGCATCGATCGCATGCATCGCGATGCCATCCCCTTTGGCGTTCGCGCCCTCGAGAGTGGCGTCGA
GGTTGAGGGCATCTGGGTTTCGCGCTCTAATACGCCCGTCCACGACCCCAAGGGCAAGGAGAAGATGGTGGCCGT
GTCGTCGCCGCTCAACGACGGTCAGAATCACGCCGGCTCGTCGGGCGCTTCTGTTGATGGAGACCCGTTGTCCTT
GTCGCCTGACGAGTCGCGCCATGTCCGCCGCTCAGCCCGTCTGACACGCCCGCGCCGTTCACGTCCGCCATCCGG
CTCGCATGTGCCGCCGTCTCTCATCATGGCATCCCACGATAATGATTTTCCTCGAGATGCTGCTCCCTATGGCGC
GACCGAGGTATACGCCAACACCAGGTTGAGGACCGCTACCCCCGGTTTCGACCTTCTTCCCGCCCGTGTCCTGAG
TCCAAGACAAGGATCTTTGGACCCAAGCACCGATGTCGAGCAGGGTCGTGTGCCGCCTGCCAGCCCTCCGCCTTC
ATCCAAACCAGGCCAGCCTTCAAAACTTCGCAAGAAGCCAAAAGCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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