© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7389 |
| Gene name | |
| Location | scaffold_71:7301..8039 |
| Strand | - |
| Gene length (bp) | 738 |
| Transcript length (bp) | 597 |
| Coding sequence length (bp) | 594 |
| Protein length (aa) | 198 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | 0.1104 | 0.2389 | 0.0087 | 0.0352 | 0.7035 | 0.1053 | 0.1454 | 0.255 | 0.0696 | 0.2764 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 57 | 79 | 22 |
| 3 | 172 | 191 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 4134 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7389 MACAGERAISLLKFVGTVSLGLLTGVSYTVSTITLPGLLHLPSSASASHAVSSLKTGLRNHILTLTTLASAPLFL SFALSPRYARHPYLLYTSALAALSAAAPRLLTLSGMYPSVRHGAKKSSRRGKMESSYEVLGDAHSEGTSEEDIED LNGEEVRAEVETLSRGYMARTGLAACGFALSVVGIWGDGVYDEDWLRL |
| Coding | >Ophio5|7389 ATGGCGTGCGCCGGCGAAAGAGCCATTTCGCTCCTCAAATTCGTGGGCACCGTGTCCCTCGGACTGTTGACGGGT GTGTCGTATACCGTCTCGACTATCACGCTTCCGGGACTTCTGCACCTACCGTCATCCGCGTCCGCCTCGCACGCT GTCTCATCTTTGAAGACGGGCTTGCGCAACCACATTCTCACGCTGACGACGCTCGCCTCGGCGCCGCTCTTCCTC TCGTTCGCACTCTCCCCTCGCTATGCGCGCCACCCGTACCTCCTGTACACGTCCGCCCTCGCTGCTCTCTCCGCA GCCGCGCCTCGTCTGCTCACTCTGTCCGGCATGTATCCCTCCGTTCGTCACGGCGCCAAGAAGTCGTCTCGCCGG GGCAAGATGGAGTCTAGCTACGAGGTGCTCGGCGACGCCCATAGCGAAGGCACCAGCGAGGAGGACATTGAGGAT TTGAATGGTGAGGAGGTCCGCGCCGAGGTCGAGACCCTCTCCAGGGGCTACATGGCAAGAACGGGCCTGGCGGCG TGCGGATTTGCTTTGTCTGTCGTGGGCATCTGGGGGGACGGCGTGTATGATGAGGACTGGCTTAGGCTT |
| Transcript | >Ophio5|7389 ATGGCGTGCGCCGGCGAAAGAGCCATTTCGCTCCTCAAATTCGTGGGCACCGTGTCCCTCGGACTGTTGACGGGT GTGTCGTATACCGTCTCGACTATCACGCTTCCGGGACTTCTGCACCTACCGTCATCCGCGTCCGCCTCGCACGCT GTCTCATCTTTGAAGACGGGCTTGCGCAACCACATTCTCACGCTGACGACGCTCGCCTCGGCGCCGCTCTTCCTC TCGTTCGCACTCTCCCCTCGCTATGCGCGCCACCCGTACCTCCTGTACACGTCCGCCCTCGCTGCTCTCTCCGCA GCCGCGCCTCGTCTGCTCACTCTGTCCGGCATGTATCCCTCCGTTCGTCACGGCGCCAAGAAGTCGTCTCGCCGG GGCAAGATGGAGTCTAGCTACGAGGTGCTCGGCGACGCCCATAGCGAAGGCACCAGCGAGGAGGACATTGAGGAT TTGAATGGTGAGGAGGTCCGCGCCGAGGTCGAGACCCTCTCCAGGGGCTACATGGCAAGAACGGGCCTGGCGGCG TGCGGATTTGCTTTGTCTGTCGTGGGCATCTGGGGGGACGGCGTGTATGATGAGGACTGGCTTAGGCTTTGA |
| Gene | >Ophio5|7389 ATGGCGTGCGCCGGCGAAAGAGCCATTTCGCTCCTCAAATTCGTGGGCACCGTGTCCCTCGGACTGTTGACGGTG CGTGCTTTCATTCAGTCGCCGAAAATTAGCTGTCGATCGGTCTGCCGGGTCCGAGGGGAGCTGGCGGGAGATGGG GGCGGGCTTGGCCGAGGGACGAACTTGAGAGTGCGTGTGGTTGACCATGGCCTCATCATCTAGGGTGTGTCGTAT ACCGTCTCGACTATCACGCTTCCGGGACTTCTGCACCTACCGTCATCCGCGTCCGCCTCGCACGCTGTCTCATCT TTGAAGACGGGCTTGCGCAACCACATTCTCACGCTGACGACGCTCGCCTCGGCGCCGCTCTTCCTCTCGTTCGCA CTCTCCCCTCGCTATGCGCGCCACCCGTACCTCCTGTACACGTCCGCCCTCGCTGCTCTCTCCGCAGCCGCGCCT CGTCTGCTCACTCTGTCCGGCATGTATCCCTCCGTTCGTCACGGCGCCAAGAAGTCGTCTCGCCGGGGCAAGATG GAGTCTAGCTACGAGGTGCTCGGCGACGCCCATAGCGAAGGCACCAGCGAGGAGGACATTGAGGATTTGAATGGT GAGGAGGTCCGCGCCGAGGTCGAGACCCTCTCCAGGGGCTACATGGCAAGAACGGGCCTGGCGGCGTGCGGATTT GCTTTGTCTGTCGTGGGCATCTGGGGGGACGGCGTGTATGATGAGGACTGGCTTAGGCTTTGA |