© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7371 |
| Gene name | |
| Location | scaffold_705:3474..4653 |
| Strand | + |
| Gene length (bp) | 1179 |
| Transcript length (bp) | 1044 |
| Coding sequence length (bp) | 1041 |
| Protein length (aa) | 347 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 8.8E-10 | 25 | 83 |
| PF04193 | PQ-loop | PQ loop repeat | 2.5E-14 | 215 | 269 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9VCR7|CTNS_DROME | Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2 | 26 | 306 | 1.0E-40 |
| sp|A8WN56|CTNS_CAEBR | Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1 | 2 | 337 | 2.0E-37 |
| sp|P57757|CTNS_MOUSE | Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1 | 25 | 311 | 5.0E-37 |
| sp|O60931|CTNS_HUMAN | Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2 | 25 | 311 | 5.0E-37 |
| sp|A7MB63|CTNS_BOVIN | Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1 | 25 | 310 | 1.0E-35 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9VCR7|CTNS_DROME | Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2 | 26 | 306 | 1.0E-40 |
| sp|A8WN56|CTNS_CAEBR | Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1 | 2 | 337 | 2.0E-37 |
| sp|P57757|CTNS_MOUSE | Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1 | 25 | 311 | 5.0E-37 |
| sp|O60931|CTNS_HUMAN | Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2 | 25 | 311 | 5.0E-37 |
| sp|A7MB63|CTNS_BOVIN | Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1 | 25 | 310 | 1.0E-35 |
| sp|Q54WT7|CTNS_DICDI | Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1 | 30 | 306 | 4.0E-35 |
| sp|P57758|CTNS_ARATH | Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1 | 28 | 329 | 2.0E-32 |
| sp|Q09500|CTNS_CAEEL | Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=3 SV=2 | 212 | 308 | 2.0E-22 |
| sp|Q09500|CTNS_CAEEL | Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=3 SV=2 | 21 | 124 | 7.0E-15 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 44 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| 2 | 63 | 85 | 22 |
| 3 | 105 | 124 | 19 |
| 4 | 139 | 161 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7371 MMDDLSGHSTSAGGQQHQDAFLTGLSALFGWVYTLAWSGSFYAQPVLNYRRGSTSGSTVDFPFINVLGFAAYLAS NAALYLSPLIRAQYAARNHGLRPTVQANDLLFALHALILSVLTASQYLFRRAWGFHPAAGTRPTRFMVGIAGGCI VALLFTYALVLSEKHSPHLGRPGGNHPSSSSSSPSSSAAAAPSWLFFVAVADPAAASAWCELDLVYAAGYVKLVI TLVKYTPQIVANARNRSTVGWSIWQVLLDVLGGLLSIAQQAVDSYLLRDWSGISGNPVKFALGNASLFFDSIFIA QHYLLYPSHPAAAKTAERDPLLRGDDDYLDHEAPDDEENIRRRRRLD |
| Coding | >Ophio5|7371 ATGATGGATGACCTCAGCGGACACAGCACCAGTGCGGGAGGACAGCAGCATCAGGACGCCTTTCTGACCGGGCTG TCTGCTCTCTTCGGCTGGGTGTATACGCTTGCTTGGAGTGGCTCATTTTACGCGCAGCCGGTGCTCAATTATCGA CGGGGGAGCACTTCGGGATCGACGGTGGACTTTCCGTTTATTAATGTGTTGGGTTTCGCCGCATACCTCGCCTCC AACGCAGCACTATACCTCTCGCCGCTGATCCGAGCGCAATACGCAGCACGAAACCACGGGCTACGACCGACAGTA CAAGCCAACGACCTACTCTTCGCCCTGCACGCCCTCATCCTATCCGTGCTGACAGCATCGCAATACCTCTTCCGA AGAGCGTGGGGCTTCCATCCGGCTGCGGGAACTCGACCTACCAGATTCATGGTCGGTATTGCTGGAGGTTGTATC GTCGCTCTCCTCTTTACCTACGCACTCGTTCTATCCGAGAAGCATTCGCCTCATCTAGGCCGTCCTGGTGGAAAT CATCCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTGCTGCTGCTGCCCCTAGCTGGCTTTTTTTTGTTGCTGTG GCTGATCCGGCTGCTGCTTCCGCTTGGTGTGAACTCGATCTCGTCTATGCCGCTGGCTATGTCAAGCTCGTCATC ACCCTCGTCAAGTATACCCCGCAGATTGTGGCCAATGCTCGGAATCGAAGTACCGTCGGTTGGAGCATTTGGCAG GTTTTGCTCGATGTCTTGGGTGGCTTGCTCAGTATCGCTCAGCAGGCGGTCGATAGCTACTTGCTGCGCGACTGG TCTGGCATTTCCGGCAATCCTGTCAAGTTCGCCCTCGGCAATGCGAGCCTCTTTTTTGATTCCATCTTCATCGCC CAGCATTATCTTCTGTATCCCTCGCATCCTGCTGCCGCCAAGACGGCTGAGAGGGATCCCTTGTTGAGGGGGGAT GACGACTATCTTGACCATGAGGCGCCCGACGATGAGGAGAACATCCGCCGGAGGAGGAGGCTGGAT |
| Transcript | >Ophio5|7371 ATGATGGATGACCTCAGCGGACACAGCACCAGTGCGGGAGGACAGCAGCATCAGGACGCCTTTCTGACCGGGCTG TCTGCTCTCTTCGGCTGGGTGTATACGCTTGCTTGGAGTGGCTCATTTTACGCGCAGCCGGTGCTCAATTATCGA CGGGGGAGCACTTCGGGATCGACGGTGGACTTTCCGTTTATTAATGTGTTGGGTTTCGCCGCATACCTCGCCTCC AACGCAGCACTATACCTCTCGCCGCTGATCCGAGCGCAATACGCAGCACGAAACCACGGGCTACGACCGACAGTA CAAGCCAACGACCTACTCTTCGCCCTGCACGCCCTCATCCTATCCGTGCTGACAGCATCGCAATACCTCTTCCGA AGAGCGTGGGGCTTCCATCCGGCTGCGGGAACTCGACCTACCAGATTCATGGTCGGTATTGCTGGAGGTTGTATC GTCGCTCTCCTCTTTACCTACGCACTCGTTCTATCCGAGAAGCATTCGCCTCATCTAGGCCGTCCTGGTGGAAAT CATCCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTGCTGCTGCTGCCCCTAGCTGGCTTTTTTTTGTTGCTGTG GCTGATCCGGCTGCTGCTTCCGCTTGGTGTGAACTCGATCTCGTCTATGCCGCTGGCTATGTCAAGCTCGTCATC ACCCTCGTCAAGTATACCCCGCAGATTGTGGCCAATGCTCGGAATCGAAGTACCGTCGGTTGGAGCATTTGGCAG GTTTTGCTCGATGTCTTGGGTGGCTTGCTCAGTATCGCTCAGCAGGCGGTCGATAGCTACTTGCTGCGCGACTGG TCTGGCATTTCCGGCAATCCTGTCAAGTTCGCCCTCGGCAATGCGAGCCTCTTTTTTGATTCCATCTTCATCGCC CAGCATTATCTTCTGTATCCCTCGCATCCTGCTGCCGCCAAGACGGCTGAGAGGGATCCCTTGTTGAGGGGGGAT GACGACTATCTTGACCATGAGGCGCCCGACGATGAGGAGAACATCCGCCGGAGGAGGAGGCTGGATTGA |
| Gene | >Ophio5|7371 ATGATGGATGACCTCAGCGGACACAGCACCAGTGCGGGAGGACAGCAGCATCAGGACGCCTTTCTGACCGGGCTG TCTGCTCTCTTCGGCTGGGTGTATACGCTTGCTTGGAGTGGCTCATTTTACGCGCAGCCGGTGCTCAATTATCGA CGGGGGAGCACTTCGGGATCGACGGTGGACTTTCCGTTTATTAATGTGTTGGGTACGTTATTTTTATCATCTTTA TCCTTGATGATGATTTTTGTATTTCTCTTGGAAGGGAGGAAATCATGACGATGACGATGATGAAGATGATGATGA TGGCTAAAAAAAAAAAAAAAACAATTGAGAATGCTAGGTTTCGCCGCATACCTCGCCTCCAACGCAGCACTATAC CTCTCGCCGCTGATCCGAGCGCAATACGCAGCACGAAACCACGGGCTACGACCGACAGTACAAGCCAACGACCTA CTCTTCGCCCTGCACGCCCTCATCCTATCCGTGCTGACAGCATCGCAATACCTCTTCCGAAGAGCGTGGGGCTTC CATCCGGCTGCGGGAACTCGACCTACCAGATTCATGGTCGGTATTGCTGGAGGTTGTATCGTCGCTCTCCTCTTT ACCTACGCACTCGTTCTATCCGAGAAGCATTCGCCTCATCTAGGCCGTCCTGGTGGAAATCATCCTTCTTCTTCT TCTTCTTCTCCTTCTTCTTCTGCTGCTGCTGCCCCTAGCTGGCTTTTTTTTGTTGCTGTGGCTGATCCGGCTGCT GCTTCCGCTTGGTGTGAACTCGATCTCGTCTATGCCGCTGGCTATGTCAAGCTCGTCATCACCCTCGTCAAGTAT ACCCCGCAGATTGTGGCCAATGCTCGGAATCGAAGTACCGTCGGTTGGAGCATTTGGCAGGTTTTGCTCGATGTC TTGGGTGGCTTGCTCAGTATCGCTCAGCAGGCGGTCGATAGCTACTTGCTGCGCGACTGGTCTGGCATTTCCGGC AATCCTGTCAAGTTCGCCCTCGGCAATGCGAGCCTCTTTTTTGATTCCATCTTCATCGCCCAGCATTATCTTCTG TATCCCTCGCATCCTGCTGCCGCCAAGACGGCTGAGAGGGATCCCTTGTTGAGGGGGGATGACGACTATCTTGAC CATGAGGCGCCCGACGATGAGGAGAACATCCGCCGGAGGAGGAGGCTGGATTGA |