© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7337 |
| Gene name | |
| Location | scaffold_70:3177..4459 |
| Strand | + |
| Gene length (bp) | 1282 |
| Transcript length (bp) | 1203 |
| Coding sequence length (bp) | 1200 |
| Protein length (aa) | 400 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00383 | dCMP_cyt_deam_1 | Cytidine and deoxycytidylate deaminase zinc-binding region | 9.4E-22 | 80 | 230 |
| PF14437 | MafB19-deam | MafB19-like deaminase | 1.7E-06 | 82 | 138 |
| PF14437 | MafB19-deam | MafB19-like deaminase | 1.5E-07 | 197 | 236 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P47058|TAD2_YEAST | tRNA-specific adenosine deaminase subunit TAD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAD2 PE=1 SV=1 | 80 | 400 | 3.0E-30 |
| sp|Q7Z6V5|ADAT2_HUMAN | tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1 SV=1 | 80 | 332 | 1.0E-28 |
| sp|O94642|TAD2_SCHPO | tRNA-specific adenosine deaminase subunit tad2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tad2 PE=3 SV=2 | 78 | 335 | 5.0E-28 |
| sp|Q6P6J0|ADAT2_MOUSE | tRNA-specific adenosine deaminase 2 OS=Mus musculus GN=Adat2 PE=1 SV=1 | 80 | 324 | 7.0E-28 |
| sp|Q5E9J7|ADAT2_BOVIN | tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2 SV=1 | 80 | 330 | 8.0E-27 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P47058|TAD2_YEAST | tRNA-specific adenosine deaminase subunit TAD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAD2 PE=1 SV=1 | 80 | 400 | 3.0E-30 |
| sp|Q7Z6V5|ADAT2_HUMAN | tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1 SV=1 | 80 | 332 | 1.0E-28 |
| sp|O94642|TAD2_SCHPO | tRNA-specific adenosine deaminase subunit tad2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tad2 PE=3 SV=2 | 78 | 335 | 5.0E-28 |
| sp|Q6P6J0|ADAT2_MOUSE | tRNA-specific adenosine deaminase 2 OS=Mus musculus GN=Adat2 PE=1 SV=1 | 80 | 324 | 7.0E-28 |
| sp|Q5E9J7|ADAT2_BOVIN | tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2 SV=1 | 80 | 330 | 8.0E-27 |
| sp|Q5RIV4|ADAT2_DANRE | tRNA-specific adenosine deaminase 2 OS=Danio rerio GN=adat2 PE=2 SV=2 | 83 | 327 | 4.0E-26 |
| sp|Q0P4H0|ADAT2_XENTR | tRNA-specific adenosine deaminase 2 OS=Xenopus tropicalis GN=adat2 PE=2 SV=1 | 83 | 330 | 2.0E-24 |
| sp|Q4V7V8|ADAT2_XENLA | tRNA-specific adenosine deaminase 2 OS=Xenopus laevis GN=adat2 PE=2 SV=1 | 83 | 330 | 3.0E-24 |
| sp|P0DA21|TADA_STRPQ | tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1 | 80 | 245 | 1.0E-14 |
| sp|Q5XE14|TADA_STRP6 | tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA PE=1 SV=2 | 80 | 245 | 1.0E-14 |
| sp|P0DA20|TADA_STRP3 | tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=tadA PE=3 SV=1 | 80 | 245 | 1.0E-14 |
| sp|P68999|TADA_STRP1 | tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M1 GN=tadA PE=3 SV=1 | 80 | 245 | 1.0E-14 |
| sp|Q8P2R7|TADA_STRP8 | tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=tadA PE=3 SV=1 | 80 | 245 | 1.0E-14 |
| sp|Q9S7I0|TADA_ARATH | tRNA(adenine(34)) deaminase, chloroplastic OS=Arabidopsis thaliana GN=TADA PE=1 SV=1 | 53 | 245 | 5.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0002100 | tRNA wobble adenosine to inosine editing | Yes |
| GO:0008251 | tRNA-specific adenosine deaminase activity | Yes |
| GO:0043412 | macromolecule modification | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0019239 | deaminase activity | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008033 | tRNA processing | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006400 | tRNA modification | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0009451 | RNA modification | No |
| GO:0002097 | tRNA wobble base modification | No |
| GO:0016553 | base conversion or substitution editing | No |
| GO:0004000 | adenosine deaminase activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0006382 | adenosine to inosine editing | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006399 | tRNA metabolic process | No |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 37 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 40.13 | 20.56 | 59.70 |
| CcL | In ants, during behavior modification | 54.13 | 27.60 | 80.67 |
| CcD | In ants, recently dead | 24.33 | 11.02 | 37.63 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.232979 | no |
| SC16a | CcD | 0.048206 | yes |
| CcL | CcD | 0.000770 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7337 MSDSSSIINSPPRQQLSQKKRKKKKGRSKQRMADAHLDKENVPPQAVGALTVALKEVSLRGNKPKLDEDDEETRA AKERQQNQRFIDEALEMARLALRTNETPVGCVLVRNGSIIAKGMNATNVTRNGTRHAELMAISALLSVASSSGPR TTSLRPPRPKDDDSCTLDSPDEGNEDGSKSHLYPYGQKFLPDKQVDARILRDSVLYVTVEPCVMCASLLRQLGIK KVYFGAVNDKFGGTGGVFSIHANSLPVGADGQTAASHPLPRCQPSQLPDGSGTLGTSYPPGGGDGGNVEPGYEIE GGWGRDEAVGLLRRFYVQENGRAPVPRKKEGRAARLAAMIERDTNTSAPSLGLEESLDREGDTTLVGGLDSLGFR SDGSDDEIDVRDKDGYLQLVEDNCR |
| Coding | >Ophio5|7337 ATGTCGGACAGCAGCAGCATCATCAACTCGCCGCCGCGGCAGCAGCTTAGCCAGAAGAAGAGGAAGAAGAAGAAG GGGAGGTCGAAGCAGAGAATGGCCGACGCACACCTCGACAAGGAAAACGTTCCGCCGCAGGCCGTCGGTGCTCTC ACCGTCGCTCTGAAGGAAGTCAGCCTGCGAGGCAACAAGCCGAAGCTTGACGAGGATGACGAGGAGACGCGTGCA GCCAAAGAGCGGCAGCAGAATCAGCGCTTCATAGACGAGGCTCTGGAGATGGCACGGCTCGCTCTTAGAACAAAT GAAACGCCCGTTGGATGCGTCCTCGTCCGCAACGGTTCCATCATCGCCAAGGGAATGAATGCGACAAACGTCACC CGCAACGGAACTCGTCATGCCGAGCTCATGGCCATTTCAGCCTTGCTCTCCGTCGCATCGTCGTCTGGTCCGCGC ACCACCTCTCTCAGGCCTCCGCGGCCCAAAGATGACGACAGCTGCACCCTCGACTCCCCGGATGAGGGCAACGAG GACGGAAGCAAGAGTCATCTCTACCCCTACGGACAGAAGTTTCTTCCGGACAAGCAAGTCGATGCCCGGATTCTG CGAGACAGCGTGCTCTACGTCACCGTCGAGCCCTGCGTCATGTGCGCATCGCTGCTGCGCCAACTGGGCATCAAA AAGGTCTATTTCGGCGCCGTCAACGACAAGTTTGGTGGCACCGGTGGCGTCTTCAGCATACACGCCAACTCGTTG CCCGTCGGCGCGGACGGCCAGACGGCCGCCTCGCATCCGTTGCCGCGCTGCCAGCCGTCGCAGCTTCCGGACGGA AGCGGTACGCTCGGAACCTCTTACCCGCCCGGCGGCGGCGACGGAGGCAACGTCGAGCCGGGATACGAGATCGAG GGCGGCTGGGGACGCGATGAGGCCGTTGGTTTGTTGCGTCGCTTCTACGTCCAGGAGAATGGGCGGGCGCCGGTG CCGCGCAAGAAGGAGGGTCGTGCCGCGCGTCTGGCTGCCATGATTGAGAGGGATACCAACACGTCGGCGCCGTCG CTGGGTCTTGAAGAGTCGCTGGATCGGGAGGGCGACACGACGCTGGTGGGCGGCCTCGATAGCCTGGGCTTCCGG TCTGATGGCAGCGATGACGAGATTGATGTCCGCGACAAGGACGGTTATCTGCAGCTTGTCGAGGACAACTGTCGC |
| Transcript | >Ophio5|7337 ATGTCGGACAGCAGCAGCATCATCAACTCGCCGCCGCGGCAGCAGCTTAGCCAGAAGAAGAGGAAGAAGAAGAAG GGGAGGTCGAAGCAGAGAATGGCCGACGCACACCTCGACAAGGAAAACGTTCCGCCGCAGGCCGTCGGTGCTCTC ACCGTCGCTCTGAAGGAAGTCAGCCTGCGAGGCAACAAGCCGAAGCTTGACGAGGATGACGAGGAGACGCGTGCA GCCAAAGAGCGGCAGCAGAATCAGCGCTTCATAGACGAGGCTCTGGAGATGGCACGGCTCGCTCTTAGAACAAAT GAAACGCCCGTTGGATGCGTCCTCGTCCGCAACGGTTCCATCATCGCCAAGGGAATGAATGCGACAAACGTCACC CGCAACGGAACTCGTCATGCCGAGCTCATGGCCATTTCAGCCTTGCTCTCCGTCGCATCGTCGTCTGGTCCGCGC ACCACCTCTCTCAGGCCTCCGCGGCCCAAAGATGACGACAGCTGCACCCTCGACTCCCCGGATGAGGGCAACGAG GACGGAAGCAAGAGTCATCTCTACCCCTACGGACAGAAGTTTCTTCCGGACAAGCAAGTCGATGCCCGGATTCTG CGAGACAGCGTGCTCTACGTCACCGTCGAGCCCTGCGTCATGTGCGCATCGCTGCTGCGCCAACTGGGCATCAAA AAGGTCTATTTCGGCGCCGTCAACGACAAGTTTGGTGGCACCGGTGGCGTCTTCAGCATACACGCCAACTCGTTG CCCGTCGGCGCGGACGGCCAGACGGCCGCCTCGCATCCGTTGCCGCGCTGCCAGCCGTCGCAGCTTCCGGACGGA AGCGGTACGCTCGGAACCTCTTACCCGCCCGGCGGCGGCGACGGAGGCAACGTCGAGCCGGGATACGAGATCGAG GGCGGCTGGGGACGCGATGAGGCCGTTGGTTTGTTGCGTCGCTTCTACGTCCAGGAGAATGGGCGGGCGCCGGTG CCGCGCAAGAAGGAGGGTCGTGCCGCGCGTCTGGCTGCCATGATTGAGAGGGATACCAACACGTCGGCGCCGTCG CTGGGTCTTGAAGAGTCGCTGGATCGGGAGGGCGACACGACGCTGGTGGGCGGCCTCGATAGCCTGGGCTTCCGG TCTGATGGCAGCGATGACGAGATTGATGTCCGCGACAAGGACGGTTATCTGCAGCTTGTCGAGGACAACTGTCGC TAG |
| Gene | >Ophio5|7337 ATGTCGGACAGCAGCAGCATCATCAACTCGCCGCCGCGGCAGCAGCTTAGCCAGAAGAAGAGGAAGAAGAAGAAG GGGAGGTCGAAGCAGAGAATGGCCGACGCACACCTCGACAAGGAAAACGTTCCGCCGCAGGCCGTCGGTGCTCTC ACCGTCGCTCTGAAGGAAGTCAGCCTGCGAGGCAACAAGCCGAAGCTTGACGAGGATGACGAGGAGACGCGTGCA GCCAAAGAGCGGCAGCAGAATCAGCGCTTCATAGACGAGGCTCTGGAGATGGTAGGCCAGACGAAAAGACCTTTT CCCTCCTTCCCAACAGAGAAAAAAAAAAAAAGACTGACTCTCCCACCACCCAAAGGCACGGCTCGCTCTTAGAAC AAATGAAACGCCCGTTGGATGCGTCCTCGTCCGCAACGGTTCCATCATCGCCAAGGGAATGAATGCGACAAACGT CACCCGCAACGGAACTCGTCATGCCGAGCTCATGGCCATTTCAGCCTTGCTCTCCGTCGCATCGTCGTCTGGTCC GCGCACCACCTCTCTCAGGCCTCCGCGGCCCAAAGATGACGACAGCTGCACCCTCGACTCCCCGGATGAGGGCAA CGAGGACGGAAGCAAGAGTCATCTCTACCCCTACGGACAGAAGTTTCTTCCGGACAAGCAAGTCGATGCCCGGAT TCTGCGAGACAGCGTGCTCTACGTCACCGTCGAGCCCTGCGTCATGTGCGCATCGCTGCTGCGCCAACTGGGCAT CAAAAAGGTCTATTTCGGCGCCGTCAACGACAAGTTTGGTGGCACCGGTGGCGTCTTCAGCATACACGCCAACTC GTTGCCCGTCGGCGCGGACGGCCAGACGGCCGCCTCGCATCCGTTGCCGCGCTGCCAGCCGTCGCAGCTTCCGGA CGGAAGCGGTACGCTCGGAACCTCTTACCCGCCCGGCGGCGGCGACGGAGGCAACGTCGAGCCGGGATACGAGAT CGAGGGCGGCTGGGGACGCGATGAGGCCGTTGGTTTGTTGCGTCGCTTCTACGTCCAGGAGAATGGGCGGGCGCC GGTGCCGCGCAAGAAGGAGGGTCGTGCCGCGCGTCTGGCTGCCATGATTGAGAGGGATACCAACACGTCGGCGCC GTCGCTGGGTCTTGAAGAGTCGCTGGATCGGGAGGGCGACACGACGCTGGTGGGCGGCCTCGATAGCCTGGGCTT CCGGTCTGATGGCAGCGATGACGAGATTGATGTCCGCGACAAGGACGGTTATCTGCAGCTTGTCGAGGACAACTG TCGCTAG |