Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|7335
Gene name
Location	scaffold_70:231..1198
Strand	+
Gene length (bp)	967
Transcript length (bp)	801
Coding sequence length (bp)	798
Protein length (aa)	266

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01753	zf-MYND	MYND finger	4.0E-11	40	80

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|D3ZKV9\|MSS51_RAT	Putative protein MSS51 homolog, mitochondrial OS=Rattus norvegicus GN=Mss51 PE=3 SV=1	10	84	1.0E-06
sp\|Q4VC12\|MSS51_HUMAN	Putative protein MSS51 homolog, mitochondrial OS=Homo sapiens GN=MSS51 PE=1 SV=2	40	84	3.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 19	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	171.49	93.26	249.72
CcL	In ants, during behavior modification	88.77	44.11	133.42
CcD	In ants, recently dead	91.36	49.12	133.60

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.002627	yes
SC16a	CcD	0.003573	yes
CcL	CcD	0.924500	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|7335 MPVFLGVLRLPRFEGVTQRKLDGTKERIFRTKLIIMAPECIHCKKSPPEVKLRNCAKCSSALYCSRDCQKADWKA HKKICGKNRDGPTTTTKGLETVIDNPFTRLENRTWLHDRSEKDVYGLLIDAYRLRVEDMYSFEGEADMDSIYGGA PNGLRGFRRFLQRVEKSSGLMPPWWDADKKKECEALGMSSSQWHDLQCAVEKSDIVDHYGNPQFPMQLRMFAELV YGRAPGGTSGTAMRQLLMAMENGTNGGTYSHLDVSAGPGRQ
Coding	>Ophio5\|7335 ATGCCGGTCTTCCTAGGCGTTCTTCGGCTGCCCAGGTTCGAAGGAGTAACCCAGAGGAAGCTAGACGGCACGAAA GAAAGGATTTTTCGGACGAAATTGATCATCATGGCCCCGGAATGCATTCACTGCAAGAAGTCGCCGCCTGAAGTC AAGCTCAGGAATTGCGCGAAATGTTCCTCGGCGCTCTACTGCTCCCGGGATTGCCAGAAGGCAGACTGGAAGGCT CATAAGAAAATTTGCGGCAAAAATCGAGATGGGCCGACAACGACAACAAAGGGATTGGAAACTGTCATCGATAAC CCCTTTACGCGTCTCGAGAATCGCACTTGGCTCCATGATCGATCGGAAAAAGACGTCTACGGCTTGCTGATCGAC GCCTACCGACTTCGAGTCGAAGACATGTACAGCTTCGAAGGCGAGGCAGACATGGATAGCATCTATGGTGGTGCG CCAAACGGGTTGCGTGGCTTCCGGCGCTTCCTGCAGCGCGTCGAGAAATCCTCCGGCCTAATGCCGCCGTGGTGG GATGCCGACAAGAAGAAAGAGTGTGAGGCACTGGGTATGAGTTCATCGCAATGGCATGACCTGCAATGCGCAGTG GAAAAGAGCGACATCGTGGACCATTATGGAAATCCTCAATTCCCGATGCAGCTTCGCATGTTTGCCGAGCTCGTC TATGGTCGAGCTCCGGGCGGGACGAGTGGAACGGCGATGAGGCAACTTCTGATGGCCATGGAGAACGGCACGAAC GGGGGAACGTATTCGCATCTGGACGTGTCAGCCGGCCCTGGTCGGCAG
Transcript	>Ophio5\|7335 ATGCCGGTCTTCCTAGGCGTTCTTCGGCTGCCCAGGTTCGAAGGAGTAACCCAGAGGAAGCTAGACGGCACGAAA GAAAGGATTTTTCGGACGAAATTGATCATCATGGCCCCGGAATGCATTCACTGCAAGAAGTCGCCGCCTGAAGTC AAGCTCAGGAATTGCGCGAAATGTTCCTCGGCGCTCTACTGCTCCCGGGATTGCCAGAAGGCAGACTGGAAGGCT CATAAGAAAATTTGCGGCAAAAATCGAGATGGGCCGACAACGACAACAAAGGGATTGGAAACTGTCATCGATAAC CCCTTTACGCGTCTCGAGAATCGCACTTGGCTCCATGATCGATCGGAAAAAGACGTCTACGGCTTGCTGATCGAC GCCTACCGACTTCGAGTCGAAGACATGTACAGCTTCGAAGGCGAGGCAGACATGGATAGCATCTATGGTGGTGCG CCAAACGGGTTGCGTGGCTTCCGGCGCTTCCTGCAGCGCGTCGAGAAATCCTCCGGCCTAATGCCGCCGTGGTGG GATGCCGACAAGAAGAAAGAGTGTGAGGCACTGGGTATGAGTTCATCGCAATGGCATGACCTGCAATGCGCAGTG GAAAAGAGCGACATCGTGGACCATTATGGAAATCCTCAATTCCCGATGCAGCTTCGCATGTTTGCCGAGCTCGTC TATGGTCGAGCTCCGGGCGGGACGAGTGGAACGGCGATGAGGCAACTTCTGATGGCCATGGAGAACGGCACGAAC GGGGGAACGTATTCGCATCTGGACGTGTCAGCCGGCCCTGGTCGGCAGTGA
Gene	>Ophio5\|7335 ATGCCGGTCTTCCTAGGCGTTCTTCGGCTGCCCAGGTTCTTTAAACCTCATGGCTGCCTAGGTATATAAGCCCGC CTAGATAGATTATAACCACCTTCAATTATCACCTGCCCGTATCCGCTGTCTAGCACATCCTATCTAGGTTCGAAG GAGTAACGTAAGCACCCCAAGCTGCAAGGTGTCACGCCGCACTAACCACACTCTTTTCCCTTTTAGCCAGAGGAA GCTAGACGGCACGAAAGAAAGGATTTTTCGGACGAAATTGATCATCATGGCCCCGGAATGCATTCACTGCAAGAA GTCGCCGCCTGAAGTCAAGCTCAGGAATTGCGCGAAATGTTCCTCGGCGCTCTACTGCTCCCGGGATTGCCAGAA GGCAGACTGGAAGGCTCATAAGAAAATTTGCGGCAAAAATCGAGATGGGCCGACAACGACAACAAAGGGATTGGA AACTGTCATCGATAACCCCTTTACGCGTCTCGAGAATCGCACTTGGCTCCATGATCGATCGGAAAAAGACGTCTA CGGCTTGCTGATCGACGCCTACCGACTTCGAGTCGAAGACATGTACAGCTTCGAAGGCGAGGCAGACATGGATAG CATCTATGGTGGTGCGCCAAACGGGTTGCGTGGCTTCCGGCGCTTCCTGCAGCGCGTCGAGAAATCCTCCGGCCT AATGCCGCCGTGGTGGGATGCCGACAAGAAGAAAGAGTGTGAGGCACTGGGTATGAGTTCATCGCAATGGCATGA CCTGCAATGCGCAGTGGAAAAGAGCGACATCGTGGACCATTATGGAAATCCTCAATTCCCGATGCAGCTTCGCAT GTTTGCCGAGCTCGTCTATGGTCGAGCTCCGGGCGGGACGAGTGGAACGGCGATGAGGCAACTTCTGATGGCCAT GGAGAACGGCACGAACGGGGGAACGTATTCGCATCTGGACGTGTCAGCCGGCCCTGGTCGGCAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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