Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7286
Gene name
Locationscaffold_696:8003..8399
Strand-
Gene length (bp)396
Transcript length (bp)264
Coding sequence length (bp)261
Protein length (aa) 87

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P0C5R9|YP17B_YEAST Uncharacterized protein YPR170W-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPR170W-B PE=3 SV=1 1 79 4.0E-24
sp|P0C5R7|YP169_YEAST Putative uncharacterized protein YPR169W-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPR169W-A PE=5 SV=1 1 67 6.0E-14

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Lysosome/Vacuole Signal peptide|Transmembrane domain 0.1932 0.2289 0.2406 0.2922 0.3327 0.0414 0.6173 0.5724 0.49 0.0206

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 7 29 22
2 55 77 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 68.77 20.04 117.50
CcL In ants, during behavior modification 74.69 21.87 127.52
CcD In ants, recently dead 53.48 14.35 92.61

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.843591 no
SC16a CcD 0.517924 no
CcL CcD 0.376410 no

Orthologs

Orthofinder run ID4
Orthogroup4879
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|213
Ophiocordyceps australis map64 (Brazil) OphauB2|3175
Ophiocordyceps camponoti-floridani Ophcf2|07159
Ophiocordyceps camponoti-rufipedis Ophun1|7233
Ophiocordyceps kimflemingae Ophio5|7286 (this protein)
Ophiocordyceps subramaniannii Hirsu2|11171

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7286
MKPLVSAMHAWSCTVISVFAIVILSVLGSLYRSGHEEFVGGREDPEDGKAVSGTIFTAVFVYIAFLVFCGFQGLL
HIRENRRGAITL
Coding >Ophio5|7286
ATGAAGCCCCTCGTCAGTGCCATGCACGCTTGGTCGTGCACTGTCATCTCTGTCTTTGCCATAGTCATACTCAGC
GTCCTTGGCAGTCTCTACCGCTCCGGGCACGAGGAGTTCGTTGGCGGCCGCGAAGACCCCGAAGACGGCAAGGCT
GTCTCGGGTACCATCTTCACCGCCGTCTTCGTTTATATCGCTTTTCTCGTCTTCTGCGGCTTCCAGGGCCTGCTT
CACATCCGAGAGAACCGGAGGGGCGCCATCACTTTG
Transcript >Ophio5|7286
ATGAAGCCCCTCGTCAGTGCCATGCACGCTTGGTCGTGCACTGTCATCTCTGTCTTTGCCATAGTCATACTCAGC
GTCCTTGGCAGTCTCTACCGCTCCGGGCACGAGGAGTTCGTTGGCGGCCGCGAAGACCCCGAAGACGGCAAGGCT
GTCTCGGGTACCATCTTCACCGCCGTCTTCGTTTATATCGCTTTTCTCGTCTTCTGCGGCTTCCAGGGCCTGCTT
CACATCCGAGAGAACCGGAGGGGCGCCATCACTTTGTGA
Gene >Ophio5|7286
ATGAAGCCCCTCGTCAGTGCCATGCACGCTTGGTCGTGGTACGTCTGCTCCAACCAAGACAAAACAACAAGCCGC
AACACCGGGTCTTCAGAACTGACATGACTCGTCGGGAAAGCACTGTCATCTCTGTCTTTGCCATAGTCATACTCA
GCGTCCTTGGCAGTCTCTACCGCTCCGGGCACGAGGAGTTCGTTGGCGGCCGCGAAGACCCCGAAGACGGCAAGG
CTGTCTCGGGTACCATCTTCACCGCCGTCTTCGTTTATATCGTACGTTGCCCGGCGATCCTCGAGTCCATGAATA
CGACCGACTGACGAATTGCAGGCTTTTCTCGTCTTCTGCGGCTTCCAGGGCCTGCTTCACATCCGAGAGAACCGG
AGGGGCGCCATCACTTTGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail