© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|7283 |
| Gene name | |
| Location | scaffold_696:764..3028 |
| Strand | + |
| Gene length (bp) | 2264 |
| Transcript length (bp) | 2202 |
| Coding sequence length (bp) | 2199 |
| Protein length (aa) | 733 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06011 | TRP | Transient receptor potential (TRP) ion channel | 4.0E-139 | 170 | 617 |
| PF14558 | TRP_N | ML-like domain | 1.1E-37 | 26 | 162 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P39719|FLC2_YEAST | Flavin carrier protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC2 PE=1 SV=2 | 22 | 660 | 8.0E-42 |
| sp|P53121|FLC3_YEAST | Putative flavin carrier protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC3 PE=1 SV=1 | 11 | 617 | 2.0E-36 |
| sp|Q08967|FLC1_YEAST | Flavin carrier protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC1 PE=1 SV=1 | 9 | 590 | 2.0E-35 |
| sp|Q08844|YO365_YEAST | Uncharacterized membrane protein YOR365C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR365C PE=1 SV=1 | 20 | 543 | 3.0E-32 |
| sp|Q09917|PKD2_SCHPO | TRP-like ion channel pkd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pkd2 PE=1 SV=1 | 26 | 589 | 6.0E-29 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P39719|FLC2_YEAST | Flavin carrier protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC2 PE=1 SV=2 | 22 | 660 | 8.0E-42 |
| sp|P53121|FLC3_YEAST | Putative flavin carrier protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC3 PE=1 SV=1 | 11 | 617 | 2.0E-36 |
| sp|Q08967|FLC1_YEAST | Flavin carrier protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC1 PE=1 SV=1 | 9 | 590 | 2.0E-35 |
| sp|Q08844|YO365_YEAST | Uncharacterized membrane protein YOR365C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR365C PE=1 SV=1 | 20 | 543 | 3.0E-32 |
| sp|Q09917|PKD2_SCHPO | TRP-like ion channel pkd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pkd2 PE=1 SV=1 | 26 | 589 | 6.0E-29 |
| sp|O74520|YCPE_SCHPO | Uncharacterized membrane protein C663.14c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC663.14c PE=3 SV=2 | 19 | 555 | 2.0E-23 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 23 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 341 | 363 | 22 |
| 2 | 394 | 416 | 22 |
| 3 | 420 | 442 | 22 |
| 4 | 481 | 503 | 22 |
| 5 | 507 | 529 | 22 |
| 6 | 536 | 558 | 22 |
| 7 | 573 | 595 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7283 MARFDAPPWRLLLVGLVASARAADILKTDGFSSCGSGDTIKVDKVDISYDRDQKKVVFDVAGSSLREQNVTAILD VTAYGNSVYQNSFNPCDSNTFVQRLCPVPKGSFAAQGTHEIPDQFASMIPEIAFKVPDISAQATLQLKSLEGDRV ACIRSQVSNGKTANTRAARYMAAGVVGVSLAVSGASSASTLVSGAAAGGAGGLVAPSPSFAEAFGWFQGMAMNGM FSVNYPPVYRSFSSNFAFSAFLVPWVGIESSIDDFRRKTGGNLTEDNVDFLRNATLVYPDGSTTSPNQGLLKFKR AVDDFAALVPRDDTNQSSNLQHVVQGIQAYAARLSVPKSDIFMTALLVVAIIVAAIVVGILLGKVILEAWALFGS FPESLAGFRKHYWGSIARTITSLILILYGIWVLYCIFQFTHGDTVAAKALAAVTLLIFTAVLAFFTWKIWSTARR LKREGGDADGLYDDKKIWVKYSLFYEAYKKSYWWLFVPAIVYMFIKGATLAATDGNGRAQTVAQLIIEAFMLILL LWSRPYERRSGNVVNIAIAVVRVLSVACILIFVEEFGIRQTTQTVAGVVLIVIQSTLTGVLTILIAWNAFNACCK VNPHRKRRKDMEKMQRDCDALTPLDARNSLLLDPSRKDTKSSVLSLSLDHSEKSLTRSDSERYYPTTPAFESSYM LPTPLAPGDATRSLVDSAAPMGVASHDSTSPPLERDYRGPLGPSYGYSSGGGGRGGWH |
| Coding | >Ophio5|7283 ATGGCTCGGTTCGACGCTCCGCCGTGGCGATTGCTGCTCGTCGGCCTCGTCGCCTCGGCACGGGCCGCCGACATC CTCAAGACGGACGGCTTCAGCTCTTGCGGCTCCGGCGACACCATCAAAGTGGACAAGGTCGACATCTCGTATGAC CGAGACCAGAAGAAAGTCGTCTTCGACGTTGCCGGCTCCAGTCTACGAGAACAGAATGTCACGGCCATCCTCGAT GTCACTGCTTACGGCAACTCCGTCTATCAGAATAGCTTCAACCCCTGCGACAGTAACACCTTCGTTCAGCGTCTG TGTCCGGTCCCCAAAGGATCCTTCGCCGCTCAGGGCACCCACGAGATCCCCGATCAGTTCGCCTCCATGATACCG GAAATCGCCTTTAAAGTCCCCGACATCTCCGCCCAGGCCACGCTGCAACTCAAAAGTCTCGAGGGCGATCGCGTC GCCTGTATTCGCTCTCAGGTCTCCAATGGTAAGACGGCCAACACGCGCGCCGCTCGCTACATGGCGGCCGGAGTC GTTGGCGTCTCCCTTGCCGTCTCTGGTGCCTCCTCGGCCTCGACCCTCGTCTCGGGCGCAGCAGCTGGCGGCGCC GGCGGCCTCGTCGCCCCCAGTCCCAGCTTCGCCGAGGCCTTTGGCTGGTTCCAGGGCATGGCCATGAATGGCATG TTCTCCGTCAACTATCCACCCGTCTACCGCAGCTTCTCCTCCAACTTCGCCTTCTCCGCCTTCCTCGTCCCCTGG GTCGGCATCGAGTCCTCAATCGACGACTTCCGCAGGAAGACCGGCGGCAATTTGACCGAGGACAACGTCGATTTT CTCCGAAACGCCACCCTCGTCTATCCTGACGGCTCCACCACCAGCCCTAACCAGGGGCTACTCAAGTTCAAGCGC GCCGTCGACGACTTCGCCGCCCTCGTCCCCCGCGACGACACCAATCAGTCGTCCAACCTCCAGCACGTCGTCCAG GGCATTCAGGCCTACGCTGCTAGGCTGTCAGTCCCCAAGTCGGACATCTTCATGACGGCCCTGCTCGTCGTCGCC ATCATTGTCGCCGCCATCGTCGTCGGCATCCTTCTCGGCAAGGTCATTCTCGAGGCCTGGGCCCTCTTCGGCAGC TTCCCCGAGTCTCTCGCTGGCTTCCGCAAGCACTACTGGGGCTCCATCGCCCGTACCATCACTTCCCTTATCCTC ATTCTCTACGGCATCTGGGTTCTCTACTGCATATTTCAGTTCACTCACGGCGACACCGTCGCTGCCAAGGCCCTC GCCGCCGTCACCCTCCTCATCTTCACCGCCGTCCTCGCCTTCTTCACCTGGAAAATCTGGAGCACTGCCCGCCGT CTCAAGCGCGAAGGTGGCGACGCCGACGGTCTCTACGACGACAAGAAGATCTGGGTCAAGTACTCGCTATTCTAC GAGGCCTACAAGAAGAGCTACTGGTGGCTCTTCGTCCCGGCCATTGTCTACATGTTCATCAAGGGCGCCACCCTG GCCGCCACCGACGGCAACGGCAGGGCTCAGACGGTTGCTCAGCTCATCATCGAGGCCTTTATGCTGATCCTACTG CTCTGGAGCCGTCCATACGAGCGCCGGTCCGGCAATGTCGTCAACATCGCCATCGCAGTCGTCCGTGTCCTGTCC GTTGCCTGCATCCTCATCTTCGTCGAGGAGTTTGGCATCCGTCAGACGACACAGACCGTCGCCGGCGTCGTCCTC ATCGTCATTCAGTCCACCCTGACGGGCGTCCTCACCATCCTCATTGCCTGGAACGCCTTCAACGCCTGCTGCAAG GTGAACCCTCACCGCAAGCGCAGGAAGGATATGGAGAAAATGCAGCGCGATTGCGATGCTCTCACGCCTCTCGAC GCCCGCAACTCGCTGCTTCTCGATCCTTCGCGCAAAGATACAAAGTCATCTGTCCTCTCGCTGTCGCTCGACCAC TCGGAGAAGTCGCTCACTCGCTCCGACTCGGAGCGATACTATCCCACCACGCCGGCCTTCGAATCCTCATACATG CTCCCGACACCACTGGCGCCCGGCGACGCTACGCGGAGTCTCGTCGACTCCGCCGCTCCAATGGGTGTAGCTTCC CACGATTCGACGTCACCGCCCCTCGAGCGCGACTACAGAGGGCCGCTGGGTCCGAGCTACGGCTACAGCAGTGGA GGAGGAGGAAGAGGAGGCTGGCAC |
| Transcript | >Ophio5|7283 ATGGCTCGGTTCGACGCTCCGCCGTGGCGATTGCTGCTCGTCGGCCTCGTCGCCTCGGCACGGGCCGCCGACATC CTCAAGACGGACGGCTTCAGCTCTTGCGGCTCCGGCGACACCATCAAAGTGGACAAGGTCGACATCTCGTATGAC CGAGACCAGAAGAAAGTCGTCTTCGACGTTGCCGGCTCCAGTCTACGAGAACAGAATGTCACGGCCATCCTCGAT GTCACTGCTTACGGCAACTCCGTCTATCAGAATAGCTTCAACCCCTGCGACAGTAACACCTTCGTTCAGCGTCTG TGTCCGGTCCCCAAAGGATCCTTCGCCGCTCAGGGCACCCACGAGATCCCCGATCAGTTCGCCTCCATGATACCG GAAATCGCCTTTAAAGTCCCCGACATCTCCGCCCAGGCCACGCTGCAACTCAAAAGTCTCGAGGGCGATCGCGTC GCCTGTATTCGCTCTCAGGTCTCCAATGGTAAGACGGCCAACACGCGCGCCGCTCGCTACATGGCGGCCGGAGTC GTTGGCGTCTCCCTTGCCGTCTCTGGTGCCTCCTCGGCCTCGACCCTCGTCTCGGGCGCAGCAGCTGGCGGCGCC GGCGGCCTCGTCGCCCCCAGTCCCAGCTTCGCCGAGGCCTTTGGCTGGTTCCAGGGCATGGCCATGAATGGCATG TTCTCCGTCAACTATCCACCCGTCTACCGCAGCTTCTCCTCCAACTTCGCCTTCTCCGCCTTCCTCGTCCCCTGG GTCGGCATCGAGTCCTCAATCGACGACTTCCGCAGGAAGACCGGCGGCAATTTGACCGAGGACAACGTCGATTTT CTCCGAAACGCCACCCTCGTCTATCCTGACGGCTCCACCACCAGCCCTAACCAGGGGCTACTCAAGTTCAAGCGC GCCGTCGACGACTTCGCCGCCCTCGTCCCCCGCGACGACACCAATCAGTCGTCCAACCTCCAGCACGTCGTCCAG GGCATTCAGGCCTACGCTGCTAGGCTGTCAGTCCCCAAGTCGGACATCTTCATGACGGCCCTGCTCGTCGTCGCC ATCATTGTCGCCGCCATCGTCGTCGGCATCCTTCTCGGCAAGGTCATTCTCGAGGCCTGGGCCCTCTTCGGCAGC TTCCCCGAGTCTCTCGCTGGCTTCCGCAAGCACTACTGGGGCTCCATCGCCCGTACCATCACTTCCCTTATCCTC ATTCTCTACGGCATCTGGGTTCTCTACTGCATATTTCAGTTCACTCACGGCGACACCGTCGCTGCCAAGGCCCTC GCCGCCGTCACCCTCCTCATCTTCACCGCCGTCCTCGCCTTCTTCACCTGGAAAATCTGGAGCACTGCCCGCCGT CTCAAGCGCGAAGGTGGCGACGCCGACGGTCTCTACGACGACAAGAAGATCTGGGTCAAGTACTCGCTATTCTAC GAGGCCTACAAGAAGAGCTACTGGTGGCTCTTCGTCCCGGCCATTGTCTACATGTTCATCAAGGGCGCCACCCTG GCCGCCACCGACGGCAACGGCAGGGCTCAGACGGTTGCTCAGCTCATCATCGAGGCCTTTATGCTGATCCTACTG CTCTGGAGCCGTCCATACGAGCGCCGGTCCGGCAATGTCGTCAACATCGCCATCGCAGTCGTCCGTGTCCTGTCC GTTGCCTGCATCCTCATCTTCGTCGAGGAGTTTGGCATCCGTCAGACGACACAGACCGTCGCCGGCGTCGTCCTC ATCGTCATTCAGTCCACCCTGACGGGCGTCCTCACCATCCTCATTGCCTGGAACGCCTTCAACGCCTGCTGCAAG GTGAACCCTCACCGCAAGCGCAGGAAGGATATGGAGAAAATGCAGCGCGATTGCGATGCTCTCACGCCTCTCGAC GCCCGCAACTCGCTGCTTCTCGATCCTTCGCGCAAAGATACAAAGTCATCTGTCCTCTCGCTGTCGCTCGACCAC TCGGAGAAGTCGCTCACTCGCTCCGACTCGGAGCGATACTATCCCACCACGCCGGCCTTCGAATCCTCATACATG CTCCCGACACCACTGGCGCCCGGCGACGCTACGCGGAGTCTCGTCGACTCCGCCGCTCCAATGGGTGTAGCTTCC CACGATTCGACGTCACCGCCCCTCGAGCGCGACTACAGAGGGCCGCTGGGTCCGAGCTACGGCTACAGCAGTGGA GGAGGAGGAAGAGGAGGCTGGCACTAG |
| Gene | >Ophio5|7283 ATGGCTCGGTTCGACGCTCCGCCGTGGCGATTGCTGCTCGTCGGCCTCGTCGCCTCGGCACGGGCCGCCGACATC CTCAAGACGGACGGCTTCAGCTCTTGCGGCTCCGGCGACACCATCAAAGTGGACAAGGTCGACATCTCGTATGAC CGAGACCAGAAGAAAGTCGTCTTCGACGTTGCCGGCTCCAGTCTACGAGAACAGAATGTCACGGCCATCCTCGAT GTCACTGCTTACGGCAACTCCGTCTATCAGAATAGCTTCAACCCCTGCGACAGTAACACCTTCGTTCAGCGTCTG TGTCCGGTCCCCAAAGGATCCTTCGCCGCTCAGGGCACCCACGAGATCCCCGATCAGTTCGCCTCCATGATACCG GAAATCGCCTTTAAAGTCCCCGACATCTCCGCCCAGGCCACGCTGCAACTCAAAAGTCTCGAGGGCGATCGCGTC GCCTGTATTCGCTCTCAGGTCTCCAATGGTAAGACGGCCAACACGCGCGCCGCTCGCTACATGGCGGCCGGAGTC GTTGGCGTCTCCCTTGCCGTCTCTGGTGCCTCCTCGGCCTCGACCCTCGTCTCGGGCGCAGCAGCTGGCGGCGCC GGCGGCCTCGTCGCCCCCAGTCCCAGCTTCGCCGAGGCCTTTGGCTGGTTCCAGGGCATGGCCATGAATGGCATG TTCTCCGTCAACTATCCACCCGTCTACCGCAGCTTCTCCTCCAACTTCGCCTTCTCCGCCTTCCTCGTCCCCTGG GTCGGCATCGAGTCCTCAATCGACGACTTCCGCAGGAAGACCGGCGGCAATTTGACCGAGGACAACGTCGATTTT CTCCGAAACGCCACCCTCGTCTATCCTGACGGCTCCACCACCAGCCCTAACCAGGGGCTACTCAAGTTCAAGCGC GCCGTCGACGACTTCGCCGCCCTCGTCCCCCGCGACGACACCAATCAGTCGTCCAACCTCCAGCACGTCGTCCAG GGCATTCAGGCCTACGCTGCTAGGCTGTCAGTCCCCAAGTCGGACATCTTCATGACGGCCCTGCTCGTCGTCGCC ATCATTGTCGCCGCCATCGTCGTCGGCATCCTTCTCGGCAAGGTCATTCTCGAGGCCTGGGCCCTCTTCGGCAGC TTCCCCGAGTCTCTCGCTGGCTTCCGCAAGCACTACTGGGGCTCCATCGCCCGTACCATCACTTCCCTTATCCTC ATTCTCTACGGCATCTGGGTTCTCTACTGCATATTTCAGTTCACTCACGGCGACACCGTCGCTGCCAAGGCCCTC GCCGCCGTCACCCTCCTCATCTTCACCGCCGTCCTCGCCTTCTTCACCTGGAAAATCTGGAGCACTGCCCGCCGT CTCAAGCGCGAAGGTGGCGACGCCGACGGTCTCTACGACGACAAGAAGATCTGGGTCAAGTACTCGCTATTCTAC GAGGCCTACAAGAAGAGCTACTGGTGGCTCTTCGTCCCGGCCATTGTCTACATGTTCATCAAGGGCGCCACCCTG GCCGCCACCGACGGCAACGGCAGGGCTCAGACGGTTGCTCAGCTCATCATCGAGGCCTTTATGCTGATCCTACTG CTCTGGAGCCGTCCATACGAGCGCCGGTCCGGCAATGTCGTCAACATCGCCATCGCAGTCGTCCGTGTCCTGTCC GTTGCCTGCATCCTCATCTTCGTCGAGGAGTTTGGCATCCGTCAGACGACACAGACCGTCGCCGGCGTCGTCCTC ATCGTCATTCAGTCCACCCTGACGGGCGTCCTCACCATCCTCATTGCCTGGAACGCCTTCAACGCCTGCTGCAAG GTGAACCCTCACCGCAAGCGCAGGAAGGATATGGGTAAGCTGCCGGTGTCACCCCTGAGCCTCCTGGCCGATGCT GATGCCTCCTCCTCACGACAGAGAAAATGCAGCGCGATTGCGATGCTCTCACGCCTCTCGACGCCCGCAACTCGC TGCTTCTCGATCCTTCGCGCAAAGATACAAAGTCATCTGTCCTCTCGCTGTCGCTCGACCACTCGGAGAAGTCGC TCACTCGCTCCGACTCGGAGCGATACTATCCCACCACGCCGGCCTTCGAATCCTCATACATGCTCCCGACACCAC TGGCGCCCGGCGACGCTACGCGGAGTCTCGTCGACTCCGCCGCTCCAATGGGTGTAGCTTCCCACGATTCGACGT CACCGCCCCTCGAGCGCGACTACAGAGGGCCGCTGGGTCCGAGCTACGGCTACAGCAGTGGAGGAGGAGGAAGAG GAGGCTGGCACTAG |