Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7227
Gene name
Locationscaffold_683:3911..4908
Strand+
Gene length (bp)997
Transcript length (bp)942
Coding sequence length (bp)939
Protein length (aa) 313

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07950 MCP1_TM MDM10-complementing protein 1, transmembrane domain 1.9E-04 86 152
PF07950 MCP1_TM MDM10-complementing protein 1, transmembrane domain 3.4E-30 195 294

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

Domain # Start End Length
1 78 100 22
2 120 142 22
3 178 200 22
4 231 253 22
5 274 296 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7227
MEETPRQWQRRDSQQTLMSLLQLDPSPIESPPSSPSPLHDKELPPLPTSSGSSTAGAPGLSGNGGRGAIFYLTRL
QRYSSFATAFFASIHLVNVSLIPLATRSVPGSETYLLMTRELYQTPLAEPLVVALPVVAHVGAGVALRLLRRWQN
MRRYGAATPAMYALHRTRTTSSKDSVRLWPSLSYVSASGYALTVLYAAHVAVNRVLPLVVEGDSSNIGLAYVAHG
FARHPGLALAAYAGLIAIACGHMVWGAARWLGLADGRSSKRRRMGVHAAAAGMTALWAAGGLGVVARGGAAKGWI
AAAYDHMLAAVRL
Coding >Ophio5|7227
ATGGAGGAGACGCCCCGGCAATGGCAGCGACGCGACTCGCAACAGACGCTCATGTCGCTCCTACAGCTGGATCCG
TCGCCGATTGAATCGCCGCCTTCTTCGCCGTCGCCGCTCCATGACAAGGAGCTACCGCCCCTGCCGACCTCGAGC
GGCTCGTCGACGGCCGGTGCGCCGGGTCTCAGCGGGAACGGCGGCCGCGGTGCCATCTTCTATCTAACGCGCCTG
CAGCGCTACTCGAGCTTCGCCACCGCCTTCTTCGCCTCTATCCATCTCGTCAACGTTTCGCTGATCCCGCTTGCG
ACGCGCTCCGTCCCCGGCTCCGAGACGTACCTCCTCATGACGCGTGAGCTCTATCAGACGCCCCTGGCCGAGCCG
CTGGTCGTTGCACTACCGGTGGTGGCGCACGTCGGCGCCGGCGTCGCCCTTCGGCTTTTGCGGAGATGGCAGAAT
ATGCGACGGTACGGCGCCGCCACGCCCGCCATGTACGCGCTTCATCGGACGCGGACGACGAGCAGCAAGGACAGC
GTAAGGCTGTGGCCGTCACTGAGCTACGTCTCGGCTTCGGGATATGCCCTGACGGTGCTCTACGCCGCACACGTC
GCCGTCAACCGCGTTCTTCCGCTGGTCGTCGAGGGCGACAGCTCCAACATTGGGCTCGCGTACGTTGCTCACGGC
TTTGCCCGCCATCCTGGGCTGGCACTGGCTGCCTACGCGGGGCTCATCGCCATCGCCTGTGGACACATGGTTTGG
GGCGCCGCTCGCTGGCTTGGCCTCGCCGATGGCAGGTCCTCTAAGCGGCGGCGGATGGGCGTTCATGCTGCGGCG
GCCGGCATGACGGCACTCTGGGCTGCTGGCGGGCTGGGCGTCGTGGCGCGCGGCGGAGCGGCAAAGGGCTGGATC
GCGGCGGCTTACGACCATATGCTGGCGGCGGTGCGGCTG
Transcript >Ophio5|7227
ATGGAGGAGACGCCCCGGCAATGGCAGCGACGCGACTCGCAACAGACGCTCATGTCGCTCCTACAGCTGGATCCG
TCGCCGATTGAATCGCCGCCTTCTTCGCCGTCGCCGCTCCATGACAAGGAGCTACCGCCCCTGCCGACCTCGAGC
GGCTCGTCGACGGCCGGTGCGCCGGGTCTCAGCGGGAACGGCGGCCGCGGTGCCATCTTCTATCTAACGCGCCTG
CAGCGCTACTCGAGCTTCGCCACCGCCTTCTTCGCCTCTATCCATCTCGTCAACGTTTCGCTGATCCCGCTTGCG
ACGCGCTCCGTCCCCGGCTCCGAGACGTACCTCCTCATGACGCGTGAGCTCTATCAGACGCCCCTGGCCGAGCCG
CTGGTCGTTGCACTACCGGTGGTGGCGCACGTCGGCGCCGGCGTCGCCCTTCGGCTTTTGCGGAGATGGCAGAAT
ATGCGACGGTACGGCGCCGCCACGCCCGCCATGTACGCGCTTCATCGGACGCGGACGACGAGCAGCAAGGACAGC
GTAAGGCTGTGGCCGTCACTGAGCTACGTCTCGGCTTCGGGATATGCCCTGACGGTGCTCTACGCCGCACACGTC
GCCGTCAACCGCGTTCTTCCGCTGGTCGTCGAGGGCGACAGCTCCAACATTGGGCTCGCGTACGTTGCTCACGGC
TTTGCCCGCCATCCTGGGCTGGCACTGGCTGCCTACGCGGGGCTCATCGCCATCGCCTGTGGACACATGGTTTGG
GGCGCCGCTCGCTGGCTTGGCCTCGCCGATGGCAGGTCCTCTAAGCGGCGGCGGATGGGCGTTCATGCTGCGGCG
GCCGGCATGACGGCACTCTGGGCTGCTGGCGGGCTGGGCGTCGTGGCGCGCGGCGGAGCGGCAAAGGGCTGGATC
GCGGCGGCTTACGACCATATGCTGGCGGCGGTGCGGCTGTGA
Gene >Ophio5|7227
ATGGAGGAGACGCCCCGGCAATGGCAGCGACGCGACTCGCAACAGACGCTCATGTCGCTCCTACAGCTGGATCCG
TCGCCGATTGAATCGCCGCCTTCTTCGCCGTCGCCGCTCCATGACAAGGAGCTACCGCCCCTGCCGACCTCGAGC
GGCTCGTCGACGGCCGGTGCGCCGGGTCTCAGCGGGAACGGCGGCCGCGGTGCCATCTTCTATCGTTCGTCTTAC
CGGATGCCTCTCTTCTACACATCGATCGCCACTGACCGTCCCAGTAACGCGCCTGCAGCGCTACTCGAGCTTCGC
CACCGCCTTCTTCGCCTCTATCCATCTCGTCAACGTTTCGCTGATCCCGCTTGCGACGCGCTCCGTCCCCGGCTC
CGAGACGTACCTCCTCATGACGCGTGAGCTCTATCAGACGCCCCTGGCCGAGCCGCTGGTCGTTGCACTACCGGT
GGTGGCGCACGTCGGCGCCGGCGTCGCCCTTCGGCTTTTGCGGAGATGGCAGAATATGCGACGGTACGGCGCCGC
CACGCCCGCCATGTACGCGCTTCATCGGACGCGGACGACGAGCAGCAAGGACAGCGTAAGGCTGTGGCCGTCACT
GAGCTACGTCTCGGCTTCGGGATATGCCCTGACGGTGCTCTACGCCGCACACGTCGCCGTCAACCGCGTTCTTCC
GCTGGTCGTCGAGGGCGACAGCTCCAACATTGGGCTCGCGTACGTTGCTCACGGCTTTGCCCGCCATCCTGGGCT
GGCACTGGCTGCCTACGCGGGGCTCATCGCCATCGCCTGTGGACACATGGTTTGGGGCGCCGCTCGCTGGCTTGG
CCTCGCCGATGGCAGGTCCTCTAAGCGGCGGCGGATGGGCGTTCATGCTGCGGCGGCCGGCATGACGGCACTCTG
GGCTGCTGGCGGGCTGGGCGTCGTGGCGCGCGGCGGAGCGGCAAAGGGCTGGATCGCGGCGGCTTACGACCATAT
GCTGGCGGCGGTGCGGCTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail