© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7209 |
| Gene name | |
| Location | scaffold_68:38920..39938 |
| Strand | + |
| Gene length (bp) | 1018 |
| Transcript length (bp) | 960 |
| Coding sequence length (bp) | 957 |
| Protein length (aa) | 319 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00293 | NUDIX | NUDIX domain | 8.3E-08 | 162 | 300 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9SZ63|NUD14_ARATH | Nudix hydrolase 14, chloroplastic OS=Arabidopsis thaliana GN=NUDT14 PE=1 SV=2 | 82 | 317 | 1.0E-41 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 22 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7209 MARNGLGAGLLLLAAALLWPLFSQDMTSSFVLRLFKRSPFSLVHRYTLSGSGMAADSVRIDLPEGLTRDQLQSFR PFKEWMATLNRSLARQTVSSHPFHADPYSLRSVTVQSFDRFGADRLGFVKLAASVSNAAGESLPGAALLRGPSVA VLFILIPDDSHDDNERYVVMTVQPRIPVGSLTFTELPAGMVDDAGSFKGAAAKEMEEELGVVITDDDLACLSDMA LGDGADNNEEGLATAMFPSAGGCDEHVTLYSHERRIPRHQLRDWTGRLTGLRDEGEKITLKLVPMKHLWREGARD AKALAALALWEALRREGRL |
| Coding | >Ophio5|7209 ATGGCCCGAAATGGCCTTGGGGCTGGCCTGCTGCTGCTTGCCGCCGCCCTTCTCTGGCCTCTCTTCTCGCAGGAC ATGACCAGCAGTTTCGTCCTCCGCCTGTTCAAGCGCTCTCCCTTTTCCCTCGTCCATCGATACACTCTCAGCGGC AGCGGCATGGCGGCCGACAGCGTTCGCATTGATCTGCCCGAAGGCCTGACGCGGGACCAGCTGCAGTCTTTTAGG CCCTTCAAGGAGTGGATGGCAACGCTGAACAGATCCCTCGCGCGCCAAACTGTCTCCTCGCACCCCTTCCACGCC GACCCCTATTCCCTGCGTTCCGTCACAGTCCAGTCCTTTGACCGCTTTGGCGCCGATCGCCTCGGCTTCGTCAAG CTAGCGGCCTCGGTCTCTAATGCGGCGGGTGAGAGTCTGCCCGGGGCGGCGCTCCTCCGCGGCCCGAGCGTCGCC GTACTCTTCATCCTGATACCCGATGACAGCCATGACGACAACGAGCGCTACGTCGTTATGACGGTGCAGCCGCGT ATCCCCGTCGGTAGCTTAACCTTTACCGAGCTGCCGGCCGGAATGGTCGACGATGCAGGCAGCTTCAAGGGCGCG GCGGCCAAGGAGATGGAGGAGGAACTGGGCGTCGTCATCACAGACGATGACCTGGCGTGCTTGAGCGACATGGCC CTTGGCGACGGCGCGGATAACAATGAGGAGGGTCTCGCCACCGCCATGTTTCCGAGCGCGGGCGGCTGCGACGAG CACGTCACGCTGTACAGCCACGAACGCCGTATCCCGAGGCACCAGCTGCGCGACTGGACCGGTCGGCTGACGGGC TTGCGGGACGAAGGCGAGAAGATTACGCTCAAGCTGGTGCCGATGAAACATCTCTGGCGCGAGGGCGCCCGGGAC GCCAAGGCGCTTGCCGCACTCGCCTTGTGGGAAGCGCTGCGCAGGGAGGGCCGTCTG |
| Transcript | >Ophio5|7209 ATGGCCCGAAATGGCCTTGGGGCTGGCCTGCTGCTGCTTGCCGCCGCCCTTCTCTGGCCTCTCTTCTCGCAGGAC ATGACCAGCAGTTTCGTCCTCCGCCTGTTCAAGCGCTCTCCCTTTTCCCTCGTCCATCGATACACTCTCAGCGGC AGCGGCATGGCGGCCGACAGCGTTCGCATTGATCTGCCCGAAGGCCTGACGCGGGACCAGCTGCAGTCTTTTAGG CCCTTCAAGGAGTGGATGGCAACGCTGAACAGATCCCTCGCGCGCCAAACTGTCTCCTCGCACCCCTTCCACGCC GACCCCTATTCCCTGCGTTCCGTCACAGTCCAGTCCTTTGACCGCTTTGGCGCCGATCGCCTCGGCTTCGTCAAG CTAGCGGCCTCGGTCTCTAATGCGGCGGGTGAGAGTCTGCCCGGGGCGGCGCTCCTCCGCGGCCCGAGCGTCGCC GTACTCTTCATCCTGATACCCGATGACAGCCATGACGACAACGAGCGCTACGTCGTTATGACGGTGCAGCCGCGT ATCCCCGTCGGTAGCTTAACCTTTACCGAGCTGCCGGCCGGAATGGTCGACGATGCAGGCAGCTTCAAGGGCGCG GCGGCCAAGGAGATGGAGGAGGAACTGGGCGTCGTCATCACAGACGATGACCTGGCGTGCTTGAGCGACATGGCC CTTGGCGACGGCGCGGATAACAATGAGGAGGGTCTCGCCACCGCCATGTTTCCGAGCGCGGGCGGCTGCGACGAG CACGTCACGCTGTACAGCCACGAACGCCGTATCCCGAGGCACCAGCTGCGCGACTGGACCGGTCGGCTGACGGGC TTGCGGGACGAAGGCGAGAAGATTACGCTCAAGCTGGTGCCGATGAAACATCTCTGGCGCGAGGGCGCCCGGGAC GCCAAGGCGCTTGCCGCACTCGCCTTGTGGGAAGCGCTGCGCAGGGAGGGCCGTCTGTAG |
| Gene | >Ophio5|7209 ATGGCCCGAAATGGCCTTGGGGCTGGCCTGCTGCTGCTTGCCGCCGCCCTTCTCTGGCCTCTCTTCTCGCAGGAC ATGACCAGCAGTTTCGTCCTCCGCCTGTTCAAGCGCTCTCCCTTTTCCCTCGTCCATCGATACACTCTCAGCGGC AGCGGCATGGCGGCCGACAGCGTTCGCATTGATCTGCCCGAAGGCCTGACGCGGGACCAGCTGCAGTCTTTTAGG CCCTTCAAGGTGAGATGCGCCGTCAATCTTCTCCTCGGGGCATCCACTGCTGATCTCCCTTTGCCAGGAGTGGAT GGCAACGCTGAACAGATCCCTCGCGCGCCAAACTGTCTCCTCGCACCCCTTCCACGCCGACCCCTATTCCCTGCG TTCCGTCACAGTCCAGTCCTTTGACCGCTTTGGCGCCGATCGCCTCGGCTTCGTCAAGCTAGCGGCCTCGGTCTC TAATGCGGCGGGTGAGAGTCTGCCCGGGGCGGCGCTCCTCCGCGGCCCGAGCGTCGCCGTACTCTTCATCCTGAT ACCCGATGACAGCCATGACGACAACGAGCGCTACGTCGTTATGACGGTGCAGCCGCGTATCCCCGTCGGTAGCTT AACCTTTACCGAGCTGCCGGCCGGAATGGTCGACGATGCAGGCAGCTTCAAGGGCGCGGCGGCCAAGGAGATGGA GGAGGAACTGGGCGTCGTCATCACAGACGATGACCTGGCGTGCTTGAGCGACATGGCCCTTGGCGACGGCGCGGA TAACAATGAGGAGGGTCTCGCCACCGCCATGTTTCCGAGCGCGGGCGGCTGCGACGAGCACGTCACGCTGTACAG CCACGAACGCCGTATCCCGAGGCACCAGCTGCGCGACTGGACCGGTCGGCTGACGGGCTTGCGGGACGAAGGCGA GAAGATTACGCTCAAGCTGGTGCCGATGAAACATCTCTGGCGCGAGGGCGCCCGGGACGCCAAGGCGCTTGCCGC ACTCGCCTTGTGGGAAGCGCTGCGCAGGGAGGGCCGTCTGTAG |