Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7175
Gene name
Locationscaffold_674:4284..5050
Strand+
Gene length (bp)766
Transcript length (bp)411
Coding sequence length (bp)408
Protein length (aa) 136

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14138 COX16 Cytochrome c oxidase assembly protein COX16 8.9E-29 32 107

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q4I8P5|COX16_GIBZE Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=COX16 PE=3 SV=1 1 113 4.0E-48
sp|Q7SI11|COX16_NEUCR Cytochrome c oxidase assembly protein cox16, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cox-9 PE=3 SV=1 3 103 1.0E-40
sp|Q0UIR3|COX16_PHANO Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=COX16 PE=3 SV=2 16 113 2.0E-34
sp|Q1DME3|COX16_COCIM Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Coccidioides immitis (strain RS) GN=COX16 PE=3 SV=1 1 103 9.0E-31
sp|A1C8Z3|COX16_ASPCL Cytochrome c oxidase assembly protein cox16, mitochondrial OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=cox16 PE=3 SV=2 1 103 2.0E-30
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Swissprot ID Swissprot Description Start End E-value
sp|Q4I8P5|COX16_GIBZE Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=COX16 PE=3 SV=1 1 113 4.0E-48
sp|Q7SI11|COX16_NEUCR Cytochrome c oxidase assembly protein cox16, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cox-9 PE=3 SV=1 3 103 1.0E-40
sp|Q0UIR3|COX16_PHANO Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=COX16 PE=3 SV=2 16 113 2.0E-34
sp|Q1DME3|COX16_COCIM Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Coccidioides immitis (strain RS) GN=COX16 PE=3 SV=1 1 103 9.0E-31
sp|A1C8Z3|COX16_ASPCL Cytochrome c oxidase assembly protein cox16, mitochondrial OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=cox16 PE=3 SV=2 1 103 2.0E-30
sp|Q52ZA1|COX16_PARBD Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Paracoccidioides brasiliensis (strain Pb18) GN=COX16 PE=2 SV=1 3 103 9.0E-30
sp|Q5AXJ9|COX16_EMENI Cytochrome c oxidase assembly protein cox16, mitochondrial OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cox16 PE=3 SV=2 1 103 3.0E-29
sp|Q2PIY2|COX16_ASPOR Cytochrome c oxidase assembly protein cox16, mitochondrial OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cox16 PE=3 SV=1 1 103 3.0E-28
sp|P47081|COX16_YEAST Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX16 PE=1 SV=1 17 115 1.0E-24
sp|Q6CK73|COX16_KLULA Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=COX16 PE=3 SV=1 17 103 3.0E-22
sp|Q75FA7|COX16_ASHGO Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=COX16 PE=3 SV=1 3 113 4.0E-20
sp|Q6FW43|COX16_CANGA Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=COX16 PE=3 SV=1 17 103 1.0E-19
sp|Q6CCF6|COX16_YARLI Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COX16 PE=3 SV=1 4 103 4.0E-18
sp|P0CM84|COX16_CRYNJ Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=COX16 PE=3 SV=1 1 88 1.0E-17
sp|P0CM85|COX16_CRYNB Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=COX16 PE=3 SV=1 1 88 1.0E-17
sp|Q6BY05|COX16_DEBHA Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=COX16 PE=3 SV=1 9 93 4.0E-17
sp|Q5ACH7|COX16_CANAL Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=COX16 PE=3 SV=1 9 93 6.0E-16
sp|Q9UTK1|COX16_SCHPO Cytochrome c oxidase assembly protein cox16, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox16 PE=3 SV=1 16 119 3.0E-10
sp|Q9CR63|COX16_MOUSE Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial OS=Mus musculus GN=Cox16 PE=3 SV=1 25 107 4.0E-06
sp|Q2NKS2|COX16_BOVIN Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial OS=Bos taurus GN=COX16 PE=3 SV=1 19 107 6.0E-06
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GO

GO Term Description Terminal node
GO:0031966 mitochondrial membrane Yes
GO:0110165 cellular anatomical entity No
GO:0016020 membrane No
GO:0005575 cellular_component No
GO:0031090 organelle membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 37 0.5

Transmembrane Domains

Domain # Start End Length
1 31 50 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 91.20 40.70 141.71
CcL In ants, during behavior modification 80.88 30.85 130.90
CcD In ants, recently dead 33.61 10.80 56.42

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.717542 no
SC16a CcD 0.000770 yes
CcL CcD 0.003935 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7175
MPTFQRNRFRGSADAHSLGSRYRVALRKHPFLAFGLPFISVIVAGSFVLTKATAVRYERHDRKVRQMSKEEELGM
RKGGRRVDMRDEYNRLAGRDFEKWEQKRPFRPAPGEAEAEAEAAAAAAANGKEVVGSGQKF
Coding >Ophio5|7175
ATGCCGACCTTCCAGCGCAACCGGTTCCGCGGCTCGGCCGATGCCCACAGCCTCGGTTCGCGGTATCGTGTGGCG
TTGCGCAAGCACCCGTTCCTAGCCTTTGGCCTGCCCTTCATCTCCGTCATCGTCGCCGGCTCTTTTGTCCTAACG
AAGGCGACGGCGGTGCGTTACGAGCGACACGATCGAAAGGTGCGGCAGATGAGCAAAGAGGAGGAATTGGGGATG
CGCAAGGGCGGGAGAAGGGTGGACATGCGGGATGAGTATAACAGGCTCGCCGGCAGGGATTTCGAAAAGTGGGAG
CAGAAACGGCCCTTTCGCCCTGCTCCTGGTGAGGCGGAGGCGGAGGCGGAGGCGGCGGCGGCGGCGGCGGCGAAT
GGAAAGGAGGTGGTGGGATCGGGCCAGAAGTTC
Transcript >Ophio5|7175
ATGCCGACCTTCCAGCGCAACCGGTTCCGCGGCTCGGCCGATGCCCACAGCCTCGGTTCGCGGTATCGTGTGGCG
TTGCGCAAGCACCCGTTCCTAGCCTTTGGCCTGCCCTTCATCTCCGTCATCGTCGCCGGCTCTTTTGTCCTAACG
AAGGCGACGGCGGTGCGTTACGAGCGACACGATCGAAAGGTGCGGCAGATGAGCAAAGAGGAGGAATTGGGGATG
CGCAAGGGCGGGAGAAGGGTGGACATGCGGGATGAGTATAACAGGCTCGCCGGCAGGGATTTCGAAAAGTGGGAG
CAGAAACGGCCCTTTCGCCCTGCTCCTGGTGAGGCGGAGGCGGAGGCGGAGGCGGCGGCGGCGGCGGCGGCGAAT
GGAAAGGAGGTGGTGGGATCGGGCCAGAAGTTCTGA
Gene >Ophio5|7175
ATGCCGACCTTCCAGCGCAACCGGTTCCGCGGCTCGGCCGATGCCCACAGCCTCGGTTCGCGGTATCGTGTGGCG
TTGCGCAAGCACCCGTTCCTAGCCTTTGGCCTGCCCTTCATCTCCGTCATCGTCGCCGGCTCTTTTGTCCTAACG
AAGGCGACGGCGGTGCGTTACGAGCGACACGATCGAAAGGTGCGGCAGATGAGCAAAGAGGAGGAATTGGGGATG
CGCAAGGGCGGGAGAAGGGTGGACATGCGGGATGAGTATAACGTACGTTTTGCCTCCCGTTGTTGCTTGCCAAGA
ACAGTACTACTTTCTTTCTTTCTTTCTGGATTTCCCTTGCTTGTCTACCAGCAGGTTGATACTGGCGCGAATCGG
CTGCTGAACAGCGCATCTTGCTTTCCCCTTTCCTTTCCGTTTCACACACAAAACAAAAACTACACACGTGGCTCG
CAGGGAGCGCTAAATCGAAGATTCATAGAGGCTCGCCGGCAGGGATTTCGAAAAGTGGGAGCAGAAACGTGTCGA
AAGGCTGCCAGGCGAGAGTGATGGCATCTTGAGATGATAATGACGCCAACTTGTCTCATTTCTTCTTCTTAGATC
ATGAATACCGACGTCATACCGGCTATTATTATCCGGCCAAGAACAATACACAACACATTCAGGGCCCTTTCGCCC
TGCTCCTGGTGAGGCGGAGGCGGAGGCGGAGGCGGCGGCGGCGGCGGCGGCGAATGGAAAGGAGGTGGTGGGATC
GGGCCAGAAGTTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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