© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7116 |
| Gene name | |
| Location | scaffold_663:7179..8358 |
| Strand | + |
| Gene length (bp) | 1179 |
| Transcript length (bp) | 1179 |
| Coding sequence length (bp) | 1176 |
| Protein length (aa) | 392 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04116 | FA_hydroxylase | Fatty acid hydroxylase | 2.0E-15 | 261 | 372 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38992|SUR2_YEAST | Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUR2 PE=1 SV=1 | 18 | 376 | 5.0E-77 |
| sp|O94298|SUR2_SCHPO | Sphingolipid C4-hydroxylase sur2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sur2 PE=3 SV=1 | 37 | 372 | 6.0E-71 |
| sp|Q9AST3|SBH2_ARATH | Sphinganine C4-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2 PE=1 SV=1 | 186 | 372 | 2.0E-50 |
| sp|Q8VYI1|SBH1_ARATH | Sphinganine C4-monooxygenase 1 OS=Arabidopsis thaliana GN=SBH1 PE=1 SV=1 | 195 | 372 | 5.0E-50 |
| sp|Q9CRA4|MSMO1_MOUSE | Methylsterol monooxygenase 1 OS=Mus musculus GN=Msmo1 PE=1 SV=1 | 207 | 372 | 4.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38992|SUR2_YEAST | Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUR2 PE=1 SV=1 | 18 | 376 | 5.0E-77 |
| sp|O94298|SUR2_SCHPO | Sphingolipid C4-hydroxylase sur2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sur2 PE=3 SV=1 | 37 | 372 | 6.0E-71 |
| sp|Q9AST3|SBH2_ARATH | Sphinganine C4-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2 PE=1 SV=1 | 186 | 372 | 2.0E-50 |
| sp|Q8VYI1|SBH1_ARATH | Sphinganine C4-monooxygenase 1 OS=Arabidopsis thaliana GN=SBH1 PE=1 SV=1 | 195 | 372 | 5.0E-50 |
| sp|Q9CRA4|MSMO1_MOUSE | Methylsterol monooxygenase 1 OS=Mus musculus GN=Msmo1 PE=1 SV=1 | 207 | 372 | 4.0E-08 |
| sp|Q6UGB2|MSMO1_PIG | Methylsterol monooxygenase 1 OS=Sus scrofa GN=MSMO1 PE=2 SV=1 | 202 | 392 | 6.0E-08 |
| sp|Q5R574|MSMO1_PONAB | Methylsterol monooxygenase 1 OS=Pongo abelii GN=MSMO1 PE=2 SV=1 | 202 | 388 | 9.0E-08 |
| sp|Q15800|MSMO1_HUMAN | Methylsterol monooxygenase 1 OS=Homo sapiens GN=MSMO1 PE=1 SV=1 | 202 | 388 | 9.0E-08 |
| sp|O35532|MSMO1_RAT | Methylsterol monooxygenase 1 OS=Rattus norvegicus GN=Msmo1 PE=2 SV=1 | 207 | 372 | 2.0E-07 |
| sp|Q7ZW77|MSMO1_DANRE | Methylsterol monooxygenase 1 OS=Danio rerio GN=msmo1 PE=2 SV=1 | 200 | 372 | 2.0E-07 |
| sp|Q5PRC0|CH25H_DANRE | Cholesterol 25-hydroxylase-like protein OS=Danio rerio GN=ch25h PE=2 SV=1 | 263 | 372 | 2.0E-07 |
| sp|Q8VWZ8|SMO22_ARATH | Methylsterol monooxygenase 2-2 OS=Arabidopsis thaliana GN=SMO2-2 PE=2 SV=1 | 253 | 392 | 5.0E-07 |
| sp|Q4R4Q4|MSMO1_MACFA | Methylsterol monooxygenase 1 OS=Macaca fascicularis GN=MSMO1 PE=2 SV=1 | 202 | 372 | 1.0E-06 |
| sp|P53045|MSMO_YEAST | Methylsterol monooxygenase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG25 PE=1 SV=1 | 205 | 392 | 2.0E-06 |
| sp|Q9ZW22|SMO21_ARATH | Methylsterol monooxygenase 2-1 OS=Arabidopsis thaliana GN=SMO2-1 PE=2 SV=2 | 253 | 388 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005506 | iron ion binding | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0008610 | lipid biosynthetic process | Yes |
| GO:0008152 | metabolic process | No |
| GO:0005488 | binding | No |
| GO:0009058 | biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0046872 | metal ion binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0008150 | biological_process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 32 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 34 | 56 | 22 |
| 2 | 189 | 211 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7116 MAASQNQSSFDAALPPLPSYSLEPTGDVFDCISDFWLSLLLPVAVYWAASLLFHVVDVLDLFPQYRLHTPDEILR RNHAGRFEVARDVVVQQIIQVVTGAALALAEPAEMRGKAEYDVAVWATRLRVAQRALPPLLRLLGLNAAAISKSV SASHPLLARALSGGGFPPSLAAPDVGAPAFASWELSAASLIYHVLVPALQFFAAIFILDTWQYFLHRLMHMNRWL YSEWRTPLHGRMSFSAVIPPPPPLSVTRLPLTQVVSATFHSRHHRLYVPYAFGALYNHPFEGFLLDTLGAGVAFK LTGMTLRQGTCFFAFSTLKTVDDHCGYAFPWDPLQRVTSNNAAYHDIHHQTWGIKNNFSQPFFTFWDSLLNTKYK GGRVDRLADKKRTGETK |
| Coding | >Ophio5|7116 ATGGCCGCCTCCCAGAACCAGAGCTCCTTCGACGCGGCCCTGCCGCCACTGCCTTCGTACAGCCTCGAGCCGACG GGCGACGTTTTCGACTGCATCTCCGACTTTTGGCTGTCGCTGCTACTGCCCGTGGCCGTCTACTGGGCTGCGTCG CTACTGTTCCATGTCGTCGACGTGCTCGACCTCTTTCCCCAATACCGGCTTCATACGCCCGACGAAATCTTGCGG CGCAACCACGCGGGCCGGTTTGAGGTGGCACGCGATGTGGTTGTCCAGCAGATTATCCAGGTCGTCACCGGCGCT GCTCTCGCTCTAGCCGAGCCGGCCGAGATGCGTGGCAAGGCCGAGTACGACGTGGCTGTGTGGGCCACCCGTCTT CGCGTCGCCCAGCGCGCCCTCCCACCCCTGCTGCGGCTGCTCGGCCTCAACGCGGCGGCCATCTCCAAGAGCGTG TCGGCCTCACATCCCTTGCTGGCCCGCGCCCTTTCCGGAGGTGGTTTTCCCCCGTCCCTCGCCGCCCCGGACGTC GGCGCGCCGGCCTTTGCCTCCTGGGAGTTGTCGGCGGCCAGCCTCATCTACCACGTGCTCGTGCCGGCGCTGCAG TTCTTCGCCGCCATCTTCATCCTCGATACGTGGCAGTACTTTCTCCATCGGCTCATGCACATGAACCGCTGGCTG TATAGTGAGTGGCGGACGCCCTTGCACGGCAGGATGTCCTTTTCTGCCGTGATCCCCCCCCCCCCCCCGCTCTCC GTGACCCGGCTACCGCTGACACAGGTCGTATCAGCCACGTTCCACTCGCGTCATCATCGGCTTTACGTGCCGTAC GCGTTCGGCGCGCTCTACAACCATCCGTTTGAGGGGTTTCTGCTCGATACGCTCGGCGCGGGCGTCGCTTTTAAG CTCACGGGCATGACACTGCGTCAAGGCACCTGCTTCTTCGCTTTCTCGACACTCAAGACGGTCGACGATCACTGC GGCTATGCGTTTCCCTGGGACCCCCTGCAGCGGGTGACGAGCAACAACGCGGCCTACCACGACATCCACCACCAG ACGTGGGGCATCAAGAACAACTTTTCGCAGCCGTTTTTCACCTTTTGGGACTCGTTGCTGAATACCAAGTACAAG GGAGGGCGAGTTGACCGACTGGCCGATAAGAAGCGCACGGGAGAGACCAAG |
| Transcript | >Ophio5|7116 ATGGCCGCCTCCCAGAACCAGAGCTCCTTCGACGCGGCCCTGCCGCCACTGCCTTCGTACAGCCTCGAGCCGACG GGCGACGTTTTCGACTGCATCTCCGACTTTTGGCTGTCGCTGCTACTGCCCGTGGCCGTCTACTGGGCTGCGTCG CTACTGTTCCATGTCGTCGACGTGCTCGACCTCTTTCCCCAATACCGGCTTCATACGCCCGACGAAATCTTGCGG CGCAACCACGCGGGCCGGTTTGAGGTGGCACGCGATGTGGTTGTCCAGCAGATTATCCAGGTCGTCACCGGCGCT GCTCTCGCTCTAGCCGAGCCGGCCGAGATGCGTGGCAAGGCCGAGTACGACGTGGCTGTGTGGGCCACCCGTCTT CGCGTCGCCCAGCGCGCCCTCCCACCCCTGCTGCGGCTGCTCGGCCTCAACGCGGCGGCCATCTCCAAGAGCGTG TCGGCCTCACATCCCTTGCTGGCCCGCGCCCTTTCCGGAGGTGGTTTTCCCCCGTCCCTCGCCGCCCCGGACGTC GGCGCGCCGGCCTTTGCCTCCTGGGAGTTGTCGGCGGCCAGCCTCATCTACCACGTGCTCGTGCCGGCGCTGCAG TTCTTCGCCGCCATCTTCATCCTCGATACGTGGCAGTACTTTCTCCATCGGCTCATGCACATGAACCGCTGGCTG TATAGTGAGTGGCGGACGCCCTTGCACGGCAGGATGTCCTTTTCTGCCGTGATCCCCCCCCCCCCCCCGCTCTCC GTGACCCGGCTACCGCTGACACAGGTCGTATCAGCCACGTTCCACTCGCGTCATCATCGGCTTTACGTGCCGTAC GCGTTCGGCGCGCTCTACAACCATCCGTTTGAGGGGTTTCTGCTCGATACGCTCGGCGCGGGCGTCGCTTTTAAG CTCACGGGCATGACACTGCGTCAAGGCACCTGCTTCTTCGCTTTCTCGACACTCAAGACGGTCGACGATCACTGC GGCTATGCGTTTCCCTGGGACCCCCTGCAGCGGGTGACGAGCAACAACGCGGCCTACCACGACATCCACCACCAG ACGTGGGGCATCAAGAACAACTTTTCGCAGCCGTTTTTCACCTTTTGGGACTCGTTGCTGAATACCAAGTACAAG GGAGGGCGAGTTGACCGACTGGCCGATAAGAAGCGCACGGGAGAGACCAAGTAG |
| Gene | >Ophio5|7116 ATGGCCGCCTCCCAGAACCAGAGCTCCTTCGACGCGGCCCTGCCGCCACTGCCTTCGTACAGCCTCGAGCCGACG GGCGACGTTTTCGACTGCATCTCCGACTTTTGGCTGTCGCTGCTACTGCCCGTGGCCGTCTACTGGGCTGCGTCG CTACTGTTCCATGTCGTCGACGTGCTCGACCTCTTTCCCCAATACCGGCTTCATACGCCCGACGAAATCTTGCGG CGCAACCACGCGGGCCGGTTTGAGGTGGCACGCGATGTGGTTGTCCAGCAGATTATCCAGGTCGTCACCGGCGCT GCTCTCGCTCTAGCCGAGCCGGCCGAGATGCGTGGCAAGGCCGAGTACGACGTGGCTGTGTGGGCCACCCGTCTT CGCGTCGCCCAGCGCGCCCTCCCACCCCTGCTGCGGCTGCTCGGCCTCAACGCGGCGGCCATCTCCAAGAGCGTG TCGGCCTCACATCCCTTGCTGGCCCGCGCCCTTTCCGGAGGTGGTTTTCCCCCGTCCCTCGCCGCCCCGGACGTC GGCGCGCCGGCCTTTGCCTCCTGGGAGTTGTCGGCGGCCAGCCTCATCTACCACGTGCTCGTGCCGGCGCTGCAG TTCTTCGCCGCCATCTTCATCCTCGATACGTGGCAGTACTTTCTCCATCGGCTCATGCACATGAACCGCTGGCTG TATAGTGAGTGGCGGACGCCCTTGCACGGCAGGATGTCCTTTTCTGCCGTGATCCCCCCCCCCCCCCCGCTCTCC GTGACCCGGCTACCGCTGACACAGGTCGTATCAGCCACGTTCCACTCGCGTCATCATCGGCTTTACGTGCCGTAC GCGTTCGGCGCGCTCTACAACCATCCGTTTGAGGGGTTTCTGCTCGATACGCTCGGCGCGGGCGTCGCTTTTAAG CTCACGGGCATGACACTGCGTCAAGGCACCTGCTTCTTCGCTTTCTCGACACTCAAGACGGTCGACGATCACTGC GGCTATGCGTTTCCCTGGGACCCCCTGCAGCGGGTGACGAGCAACAACGCGGCCTACCACGACATCCACCACCAG ACGTGGGGCATCAAGAACAACTTTTCGCAGCCGTTTTTCACCTTTTGGGACTCGTTGCTGAATACCAAGTACAAG GGAGGGCGAGTTGACCGACTGGCCGATAAGAAGCGCACGGGAGAGACCAAGTAG |