Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7103
Gene name
Locationscaffold_660:4547..5483
Strand-
Gene length (bp)936
Transcript length (bp)720
Coding sequence length (bp)717
Protein length (aa) 239

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12352 V-SNARE_C Snare region anchored in the vesicle membrane C-terminus 7.0E-12 152 216

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P38736|GOSR1_YEAST Golgi SNAP receptor complex member 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GOS1 PE=1 SV=1 23 237 9.0E-28
sp|Q9LMP7|GOS11_ARATH Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1 26 238 9.0E-19
sp|O22151|GOS12_ARATH Golgi SNAP receptor complex member 1-2 OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=2 26 239 2.0E-18
sp|Q5RBL6|GOSR1_PONAB Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2 SV=1 25 239 4.0E-18
sp|O95249|GOSR1_HUMAN Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1 SV=1 25 239 5.0E-18
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Swissprot ID Swissprot Description Start End E-value
sp|P38736|GOSR1_YEAST Golgi SNAP receptor complex member 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GOS1 PE=1 SV=1 23 237 9.0E-28
sp|Q9LMP7|GOS11_ARATH Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1 26 238 9.0E-19
sp|O22151|GOS12_ARATH Golgi SNAP receptor complex member 1-2 OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=2 26 239 2.0E-18
sp|Q5RBL6|GOSR1_PONAB Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2 SV=1 25 239 4.0E-18
sp|O95249|GOSR1_HUMAN Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1 SV=1 25 239 5.0E-18
sp|Q2TBU3|GOSR1_BOVIN Golgi SNAP receptor complex member 1 OS=Bos taurus GN=GOSR1 PE=2 SV=1 25 239 5.0E-18
sp|O08522|GOSR1_CRIGR Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1 PE=1 SV=1 25 239 8.0E-18
sp|Q62931|GOSR1_RAT Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1 PE=1 SV=1 25 239 1.0E-17
sp|O88630|GOSR1_MOUSE Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1 SV=2 25 239 2.0E-17
sp|Q9VE50|GOSR1_DROME Golgi SNAP receptor complex member 1 OS=Drosophila melanogaster GN=Gos28 PE=2 SV=1 24 239 2.0E-11
sp|Q09835|GOS1_SCHPO Protein transport protein gos1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gos1 PE=3 SV=1 161 238 1.0E-09
sp|A8XLW0|GOSR1_CAEBR Golgi SNAP receptor complex member 1 OS=Caenorhabditis briggsae GN=gos-28 PE=3 SV=1 25 236 4.0E-09
sp|Q95ZW1|GOSR1_CAEEL Golgi SNAP receptor complex member 1 OS=Caenorhabditis elegans GN=gos-28 PE=2 SV=1 25 236 2.0E-08
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

Domain # Start End Length
1 221 238 17

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7103
MSTSTVAAAATASASSSSTATPSGSASWAQLRQQARTLETQTESLFHTYAQFSSAANVPPKPTDEEHQTESDIEE
LLDKLARLLDSEAALTSSALKQNNLSLLREKLAAHRRDLARLRGSLQQARDRANLLTNVRSDIDQYRANNPEAAE
AEYMLNERARVDNSHDMADSVLSQAYAVNDSFILQRETLASINRRITLAASQVPGINNLMGRISAKKRRDGIIMG
CFIATCFVVFWWFA
Coding >Ophio5|7103
ATGTCGACGTCCACAGTCGCCGCCGCCGCCACCGCCTCCGCCTCCTCCTCCTCCACCGCCACGCCCTCGGGGAGC
GCGAGCTGGGCCCAGCTGCGGCAACAGGCCAGAACGCTGGAGACACAGACGGAGAGCCTTTTCCACACGTATGCG
CAGTTCTCTTCCGCGGCCAATGTCCCGCCCAAGCCGACGGACGAGGAGCATCAGACGGAATCCGATATCGAGGAG
CTGTTGGATAAGCTCGCCCGGCTACTCGATTCAGAAGCAGCCCTCACGTCCTCGGCCCTCAAGCAGAACAACCTC
TCCCTACTGCGGGAGAAGCTAGCCGCCCACCGGCGCGACCTCGCCCGCCTACGCGGCTCTCTCCAGCAGGCCCGC
GATCGCGCCAACCTGCTGACCAACGTCCGGTCCGACATTGACCAATACCGCGCCAATAACCCAGAGGCTGCCGAG
GCCGAGTACATGCTCAATGAGCGCGCCCGAGTTGATAACAGCCACGACATGGCGGATAGCGTACTGAGCCAGGCC
TATGCCGTCAACGATAGCTTCATCCTGCAGAGGGAAACGCTCGCCAGCATCAACCGCAGAATCACTCTTGCTGCC
AGCCAGGTGCCCGGCATCAACAACCTGATGGGCAGGATATCGGCCAAGAAGAGGCGCGATGGCATCATCATGGGC
TGTTTCATCGCCACCTGTTTCGTCGTCTTTTGGTGGTTTGCT
Transcript >Ophio5|7103
ATGTCGACGTCCACAGTCGCCGCCGCCGCCACCGCCTCCGCCTCCTCCTCCTCCACCGCCACGCCCTCGGGGAGC
GCGAGCTGGGCCCAGCTGCGGCAACAGGCCAGAACGCTGGAGACACAGACGGAGAGCCTTTTCCACACGTATGCG
CAGTTCTCTTCCGCGGCCAATGTCCCGCCCAAGCCGACGGACGAGGAGCATCAGACGGAATCCGATATCGAGGAG
CTGTTGGATAAGCTCGCCCGGCTACTCGATTCAGAAGCAGCCCTCACGTCCTCGGCCCTCAAGCAGAACAACCTC
TCCCTACTGCGGGAGAAGCTAGCCGCCCACCGGCGCGACCTCGCCCGCCTACGCGGCTCTCTCCAGCAGGCCCGC
GATCGCGCCAACCTGCTGACCAACGTCCGGTCCGACATTGACCAATACCGCGCCAATAACCCAGAGGCTGCCGAG
GCCGAGTACATGCTCAATGAGCGCGCCCGAGTTGATAACAGCCACGACATGGCGGATAGCGTACTGAGCCAGGCC
TATGCCGTCAACGATAGCTTCATCCTGCAGAGGGAAACGCTCGCCAGCATCAACCGCAGAATCACTCTTGCTGCC
AGCCAGGTGCCCGGCATCAACAACCTGATGGGCAGGATATCGGCCAAGAAGAGGCGCGATGGCATCATCATGGGC
TGTTTCATCGCCACCTGTTTCGTCGTCTTTTGGTGGTTTGCTTAG
Gene >Ophio5|7103
ATGTCGACGTCCACAGTCGCCGCCGCCGCCACCGCCTCCGCCTCCTCCTCCTCCACCGCCACGCCCTCGGGGAGC
GCGAGCTGGGCCCAGCTGCGGCAACAGGCCAGAACGCTGGAGACACAGGTGATGAACCGCGAGTTACCTTTTTCA
ATATTTTTTTTTCCCTGGCCGTCGTTTTCTACCTTCTCCCCCTTTTCTGACCGTTGGGAATCAAAGACGGAGAGC
CTTTTCCACACGTATGCGCAGTTCTCTTCCGCGGCCAATGTCCCGCCCAAGCCGACGGACGAGGAGCATCAGACG
GAATCCGATATCGAGGAGCTGTTGGATAAGGTGCGCAGGTGTCCCCTCTTCTCTACCTTCCCTCCCGGAGGATCA
GGGCATCGGCTGAAGATGCGGAATTTTTTCTTTTTTTTTTTTCTCTCTTTTTCACAGCGCGAAACTGTCATCTCC
CAGCTCGCCCGGCTACTCGATTCAGAAGCAGCCCTCACGTCCTCGGCCCTCAAGCAGAACAACCTCTCCCTACTG
CGGGAGAAGCTAGCCGCCCACCGGCGCGACCTCGCCCGCCTACGCGGCTCTCTCCAGCAGGCCCGCGATCGCGCC
AACCTGCTGACCAACGTCCGGTCCGACATTGACCAATACCGCGCCAATAACCCAGAGGCTGCCGAGGCCGAGTAC
ATGCTCAATGAGCGCGCCCGAGTTGATAACAGCCACGACATGGCGGATAGCGTACTGAGCCAGGCCTATGCCGTC
AACGATAGCTTCATCCTGCAGAGGGAAACGCTCGCCAGCATCAACCGCAGAATCACTCTTGCTGCCAGCCAGGTG
CCCGGCATCAACAACCTGATGGGCAGGATATCGGCCAAGAAGAGGCGCGATGGCATCATCATGGGCTGTTTCATC
GCCACCTGTTTCGTCGTCTTTTGGTGGTTTGCTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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