© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7100 |
| Gene name | |
| Location | scaffold_660:98..800 |
| Strand | + |
| Gene length (bp) | 702 |
| Transcript length (bp) | 645 |
| Coding sequence length (bp) | 642 |
| Protein length (aa) | 214 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01202 | SKI | Shikimate kinase | 8.8E-12 | 48 | 204 |
| PF13671 | AAA_33 | AAA domain | 1.6E-10 | 41 | 164 |
| PF13238 | AAA_18 | AAA domain | 2.5E-08 | 42 | 163 |
| PF03215 | Rad17 | Rad17 P-loop domain | 2.6E-06 | 29 | 68 |
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 1.2E-04 | 42 | 72 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10242|GNTK_SCHPO | Probable gluconokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4G9.12 PE=3 SV=1 | 33 | 214 | 2.0E-48 |
| sp|P46859|GNTK_ECOLI | Thermoresistant gluconokinase OS=Escherichia coli (strain K12) GN=gntK PE=1 SV=4 | 37 | 204 | 4.0E-31 |
| sp|Q03786|GNTK_YEAST | Probable gluconokinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR248C PE=1 SV=1 | 40 | 207 | 4.0E-31 |
| sp|Q54PI5|GNTK_DICDI | Probable gluconokinase OS=Dictyostelium discoideum GN=DDB_G0284557 PE=3 SV=1 | 40 | 199 | 1.0E-29 |
| sp|P39208|IDNK_ECOLI | Thermosensitive gluconokinase OS=Escherichia coli (strain K12) GN=idnK PE=3 SV=1 | 41 | 199 | 2.0E-29 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10242|GNTK_SCHPO | Probable gluconokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4G9.12 PE=3 SV=1 | 33 | 214 | 2.0E-48 |
| sp|P46859|GNTK_ECOLI | Thermoresistant gluconokinase OS=Escherichia coli (strain K12) GN=gntK PE=1 SV=4 | 37 | 204 | 4.0E-31 |
| sp|Q03786|GNTK_YEAST | Probable gluconokinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR248C PE=1 SV=1 | 40 | 207 | 4.0E-31 |
| sp|Q54PI5|GNTK_DICDI | Probable gluconokinase OS=Dictyostelium discoideum GN=DDB_G0284557 PE=3 SV=1 | 40 | 199 | 1.0E-29 |
| sp|P39208|IDNK_ECOLI | Thermosensitive gluconokinase OS=Escherichia coli (strain K12) GN=idnK PE=3 SV=1 | 41 | 199 | 2.0E-29 |
| sp|Q8R0J8|GNTK_MOUSE | Probable gluconokinase OS=Mus musculus GN=Idnk PE=1 SV=2 | 40 | 201 | 2.0E-28 |
| sp|Q5FQ97|GCNK_GLUOX | Gluconokinase OS=Gluconobacter oxydans (strain 621H) GN=GOX1709 PE=1 SV=1 | 42 | 184 | 5.0E-28 |
| sp|Q32PY9|GNTK_RAT | Probable gluconokinase OS=Rattus norvegicus GN=Idnk PE=2 SV=1 | 40 | 204 | 3.0E-27 |
| sp|Q5T6J7|GNTK_HUMAN | Probable gluconokinase OS=Homo sapiens GN=IDNK PE=1 SV=1 | 42 | 201 | 6.0E-27 |
| sp|B0BML1|GNTK_XENTR | Probable gluconokinase OS=Xenopus tropicalis GN=idnk PE=2 SV=1 | 40 | 207 | 7.0E-27 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016887 | ATP hydrolysis activity | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0043168 | anion binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 259.77 | 140.82 | 378.72 |
| CcL | In ants, during behavior modification | 164.55 | 72.68 | 256.41 |
| CcD | In ants, recently dead | 134.57 | 72.66 | 196.48 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.068768 | no |
| SC16a | CcD | 0.002047 | yes |
| CcL | CcD | 0.460237 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7100 MAPPDGQEAAASARPVHRADATTNDVAAYANGQPSRNHHIWLVTGPAGCGKTTVAEYLAEALGMPYVEGDAYHTP DNVERMRNGHPLTDTDRWEWLIGLRHESMRRIAAGADGVVVTCSALKRKYRDVIRVASYWNRNVLIHFIFLNATA DVLLRRVTARRDHYMGPDMVQSQFDILERPAEDECDVISIDVDHSIEEVQADALARVTDMIGRH |
| Coding | >Ophio5|7100 ATGGCTCCTCCCGATGGACAGGAAGCTGCCGCCTCGGCCCGGCCCGTCCACAGGGCCGATGCGACGACCAACGAC GTGGCGGCCTATGCAAACGGTCAGCCGTCGAGGAATCACCACATCTGGTTGGTTACCGGCCCGGCCGGCTGCGGC AAGACGACCGTGGCCGAGTACCTGGCCGAGGCCTTGGGGATGCCCTACGTCGAAGGCGATGCGTATCACACACCC GACAACGTGGAGAGGATGCGCAACGGCCATCCGCTGACGGACACGGACCGCTGGGAGTGGCTGATAGGCCTGCGG CACGAATCCATGCGCCGCATCGCCGCCGGAGCCGACGGCGTCGTCGTGACGTGTTCGGCCCTGAAGCGCAAATAC CGCGACGTGATCCGCGTCGCCTCGTATTGGAACCGTAATGTTCTCATACACTTCATCTTTCTCAACGCCACCGCC GATGTGCTTCTTCGGCGCGTCACAGCGCGGCGGGATCATTACATGGGACCCGACATGGTTCAAAGCCAGTTCGAC ATTCTCGAACGGCCGGCCGAGGATGAGTGCGACGTCATCAGCATCGACGTCGACCACAGCATCGAGGAGGTGCAG GCGGATGCCCTGGCGCGCGTCACCGACATGATCGGGCGGCAC |
| Transcript | >Ophio5|7100 ATGGCTCCTCCCGATGGACAGGAAGCTGCCGCCTCGGCCCGGCCCGTCCACAGGGCCGATGCGACGACCAACGAC GTGGCGGCCTATGCAAACGGTCAGCCGTCGAGGAATCACCACATCTGGTTGGTTACCGGCCCGGCCGGCTGCGGC AAGACGACCGTGGCCGAGTACCTGGCCGAGGCCTTGGGGATGCCCTACGTCGAAGGCGATGCGTATCACACACCC GACAACGTGGAGAGGATGCGCAACGGCCATCCGCTGACGGACACGGACCGCTGGGAGTGGCTGATAGGCCTGCGG CACGAATCCATGCGCCGCATCGCCGCCGGAGCCGACGGCGTCGTCGTGACGTGTTCGGCCCTGAAGCGCAAATAC CGCGACGTGATCCGCGTCGCCTCGTATTGGAACCGTAATGTTCTCATACACTTCATCTTTCTCAACGCCACCGCC GATGTGCTTCTTCGGCGCGTCACAGCGCGGCGGGATCATTACATGGGACCCGACATGGTTCAAAGCCAGTTCGAC ATTCTCGAACGGCCGGCCGAGGATGAGTGCGACGTCATCAGCATCGACGTCGACCACAGCATCGAGGAGGTGCAG GCGGATGCCCTGGCGCGCGTCACCGACATGATCGGGCGGCACTAG |
| Gene | >Ophio5|7100 ATGGCTCCTCCCGATGGACAGGAAGCTGCCGCCTCGGCCCGGCCCGTCCACAGGGCCGATGCGACGACCAACGAC GTGGCGGCCTATGCAAACGGTCAGCCGTCGAGGAATCACCACATCTGGTTGGTTACCGGCCCGGCCGGCTGCGGC AAGACGACCGTGGCCGAGTACCTGGCCGAGGCCTTGGGGATGCCCTACGTCGAAGGCGATGCGGTATGACCTTGT CCCTCTTTTACTCGCCGGGCCTTTAATTAAAAGTGACGGCCGCAGTATCACACACCCGACAACGTGGAGAGGATG CGCAACGGCCATCCGCTGACGGACACGGACCGCTGGGAGTGGCTGATAGGCCTGCGGCACGAATCCATGCGCCGC ATCGCCGCCGGAGCCGACGGCGTCGTCGTGACGTGTTCGGCCCTGAAGCGCAAATACCGCGACGTGATCCGCGTC GCCTCGTATTGGAACCGTAATGTTCTCATACACTTCATCTTTCTCAACGCCACCGCCGATGTGCTTCTTCGGCGC GTCACAGCGCGGCGGGATCATTACATGGGACCCGACATGGTTCAAAGCCAGTTCGACATTCTCGAACGGCCGGCC GAGGATGAGTGCGACGTCATCAGCATCGACGTCGACCACAGCATCGAGGAGGTGCAGGCGGATGCCCTGGCGCGC GTCACCGACATGATCGGGCGGCACTAG |