Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7087
Gene name
Locationscaffold_66:11009..13491
Strand-
Gene length (bp)2482
Transcript length (bp)2322
Coding sequence length (bp)2319
Protein length (aa) 773

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09359 VTC VTC domain 1.2E-82 225 500
PF02656 DUF202 Domain of unknown function (DUF202) 1.9E-10 653 716

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q02725|VTC3_YEAST Vacuolar transporter chaperone 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC3 PE=1 SV=1 1 760 3.0E-133
sp|O13718|VTC2_SCHPO Vacuolar transporter chaperone 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vtc2 PE=1 SV=1 1 756 9.0E-132
sp|P43585|VTC2_YEAST Vacuolar transporter chaperone 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC2 PE=1 SV=1 1 752 7.0E-123
sp|P78810|VTC4_SCHPO Vacuolar transporter chaperone 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vtc4 PE=1 SV=2 1 752 1.0E-100
sp|P47075|VTC4_YEAST Vacuolar transporter chaperone 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC4 PE=1 SV=2 1 747 1.0E-99
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Swissprot ID Swissprot Description Start End E-value
sp|Q02725|VTC3_YEAST Vacuolar transporter chaperone 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC3 PE=1 SV=1 1 760 3.0E-133
sp|O13718|VTC2_SCHPO Vacuolar transporter chaperone 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vtc2 PE=1 SV=1 1 756 9.0E-132
sp|P43585|VTC2_YEAST Vacuolar transporter chaperone 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC2 PE=1 SV=1 1 752 7.0E-123
sp|P78810|VTC4_SCHPO Vacuolar transporter chaperone 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vtc4 PE=1 SV=2 1 752 1.0E-100
sp|P47075|VTC4_YEAST Vacuolar transporter chaperone 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC4 PE=1 SV=2 1 747 1.0E-99
sp|Q9UR17|VTC1_SCHPO Vacuolar transporter chaperone 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nrf1 PE=2 SV=1 648 750 3.0E-11
sp|A8DZH4|XPR1_DANRE Xenotropic and polytropic retrovirus receptor 1 homolog OS=Danio rerio GN=xpr1 PE=3 SV=1 1 215 2.0E-08
sp|Q9R031|XPR1_MUSMC Xenotropic and polytropic retrovirus receptor 1 homolog OS=Mus musculus castaneus GN=Xpr1 PE=2 SV=1 1 215 1.0E-07
sp|Q9QZ71|XPR1_MUSTR Xenotropic and polytropic retrovirus receptor 1 OS=Mus terricolor GN=Xpr1 PE=1 SV=1 1 215 3.0E-07
sp|Q9Z0U0|XPR1_MOUSE Xenotropic and polytropic retrovirus receptor 1 OS=Mus musculus GN=Xpr1 PE=1 SV=1 1 215 3.0E-07
sp|A7XZ53|XPR1_MUSPA Xenotropic and polytropic retrovirus receptor 1 homolog OS=Mus pahari GN=Xpr1 PE=1 SV=1 1 215 4.0E-07
sp|Q9R032|XPR1_MUSSP Xenotropic and polytropic retrovirus receptor 1 OS=Mus spretus GN=Xpr1 PE=1 SV=1 1 215 8.0E-07
sp|Q9UBH6|XPR1_HUMAN Xenotropic and polytropic retrovirus receptor 1 OS=Homo sapiens GN=XPR1 PE=1 SV=1 1 215 1.0E-06
sp|Q9QZ70|XPR1_CRIGR Xenotropic and polytropic retrovirus receptor 1 homolog OS=Cricetulus griseus GN=XPR1 PE=2 SV=1 1 215 1.0E-06
sp|Q28CY9|XPR1_XENTR Xenotropic and polytropic retrovirus receptor 1 homolog OS=Xenopus tropicalis GN=xpr1 PE=2 SV=1 1 215 3.0E-06
sp|P40046|VTC1_YEAST Vacuolar transporter chaperone 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC1 PE=1 SV=3 649 752 4.0E-06
sp|Q6DD44|XPR1_XENLA Xenotropic and polytropic retrovirus receptor 1 homolog OS=Xenopus laevis GN=xpr1 PE=2 SV=1 1 215 7.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 53 0.45

Transmembrane Domains

Domain # Start End Length
1 688 710 22
2 730 752 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 103.09 52.23 153.95
CcL In ants, during behavior modification 77.69 40.37 115.02
CcD In ants, recently dead 109.00 55.19 162.80

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.262531 no
SC16a CcD 0.860711 no
CcL CcD 0.175355 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7087
MRFGKTLREAVYEPWKEEYMDYGKLKALLHEDKAEEEEWTEEDEKRFCDEIFSTQLDKVARFQQQRFDELQRRVD
KAFRTLSELVPVEQEAVKDDKQPAADRKGDGDSDGQAATASRLRELEAELDDITNEVRELKKYSSINYTGFLKMV
KKHDRKRGDRYRVRPMMQLALAQRPFNSEQGYSPLLNKLSIMYFAIRQQLEGGGGSQAPPDLESPGETLHGERYT
AHKFWIHGDNLVEVKTLILRRLPALVYSEQSAKELDGRDSPAITSLYLDNHKFDLYSEKVDRKSEASTLRLRWYG
QLSGRPDIFVEHKTVDAKGNSQEHNFSTKDKYIMPLLKGDNVTDKTAQKMERQGVSAEQVQGYKATVAQTQALIR
QKKLSPVLRANYVRTAFQKPADDRVRISIDADLVFIREDTLDASRPCRDPEEWHRLDIDNSNMTYPFKNMSQSDV
SNFPYAVLQIKLKEDGNRKRPSWVEDLMASHLVHPAPRFSKFVHGVASLFDDYVNNLPFWLSDLERDIRKDPQRA
FEEEEQRRAQRADDVQAVGSLLGGTKPSYKAAQSSPVGDSYLAERAAADSKASQSRWLGRLTAGEERGESSTAAQ
RRSGPGGYGTLSSVFPGLSLSKYSRAQRGRLPEGVVKPTQWIKNTGELKIEPKVWLANERTFLKWQHICVLQGSL
ALGLYTAAGNDTAAAVMSIVLVAIAAFAGLWGYWLLRTRRRMITERSGKDFDKMLGPMVMSGALMAALMMNFVLQ
YQKFVERVGGTSQGRGGLASDEL
Coding >Ophio5|7087
ATGCGGTTCGGCAAGACGCTGCGGGAGGCCGTGTACGAGCCATGGAAGGAAGAGTACATGGACTATGGCAAGCTC
AAGGCGCTGCTGCACGAGGACAAGGCCGAGGAAGAAGAGTGGACCGAGGAGGACGAGAAGCGCTTCTGCGACGAA
ATCTTCAGCACCCAGCTTGACAAGGTGGCGCGCTTCCAGCAGCAGCGATTTGACGAGCTGCAGCGGCGCGTCGAC
AAGGCTTTCCGCACCTTAAGCGAGCTGGTTCCGGTTGAACAAGAGGCCGTCAAAGACGACAAGCAGCCAGCGGCC
GACAGAAAAGGCGACGGCGACAGCGACGGCCAGGCGGCGACGGCATCGCGCTTGCGGGAGCTCGAAGCCGAGCTC
GACGACATCACCAACGAGGTCAGAGAGCTCAAAAAGTACAGCAGCATCAACTACACCGGCTTCCTCAAGATGGTC
AAGAAGCACGACCGCAAGCGCGGCGACCGCTACCGCGTGCGGCCCATGATGCAGCTGGCCCTGGCGCAGCGGCCC
TTTAACTCGGAGCAGGGCTACTCTCCTCTCCTCAACAAGCTGTCCATCATGTACTTTGCCATCCGTCAACAGCTG
GAGGGTGGCGGCGGCAGCCAGGCGCCACCGGACCTCGAGAGCCCGGGCGAGACGCTTCACGGCGAGCGATACACG
GCCCACAAATTCTGGATCCATGGCGATAACCTCGTCGAGGTCAAGACGTTGATTCTCCGCCGGCTGCCAGCCCTC
GTCTACAGCGAGCAGTCGGCCAAAGAGCTGGACGGCAGGGACTCGCCCGCCATCACGTCACTGTATCTAGACAAC
CACAAGTTCGACCTCTACTCGGAAAAGGTGGACCGGAAATCCGAGGCCTCGACGCTCCGGCTGCGGTGGTACGGC
CAGCTCAGCGGCCGGCCCGACATTTTCGTCGAGCACAAGACGGTGGACGCCAAGGGCAACAGCCAGGAGCACAAC
TTTTCGACAAAGGACAAGTACATCATGCCCCTGCTCAAGGGCGACAACGTGACGGACAAGACGGCGCAGAAGATG
GAGCGGCAGGGCGTGTCGGCCGAGCAGGTCCAAGGCTACAAGGCGACGGTGGCGCAGACGCAGGCCCTGATTCGA
CAGAAGAAGCTATCGCCGGTGCTGAGGGCCAACTACGTCCGCACGGCGTTCCAGAAGCCGGCCGACGACCGGGTC
CGCATCTCCATCGACGCGGACCTGGTCTTTATCCGCGAGGACACGCTCGACGCCAGCCGTCCGTGTCGCGACCCC
GAGGAATGGCACCGGCTGGACATTGATAACAGCAACATGACGTATCCATTCAAGAATATGAGTCAGAGTGACGTG
TCCAATTTCCCCTACGCGGTGCTGCAGATCAAGCTCAAGGAGGACGGCAACCGGAAGCGGCCGTCGTGGGTCGAG
GACCTGATGGCCTCGCACCTGGTGCATCCGGCGCCGCGATTCTCCAAGTTCGTGCACGGCGTCGCGTCGCTCTTC
GACGACTACGTCAACAACCTGCCCTTTTGGCTGAGCGACCTGGAGAGGGACATCCGCAAGGACCCGCAGAGGGCC
TTTGAGGAGGAGGAGCAGCGGCGAGCGCAGCGGGCCGACGACGTCCAGGCCGTCGGCAGCCTCCTGGGGGGCACC
AAGCCGTCGTACAAGGCAGCGCAGAGCTCGCCGGTTGGGGACTCGTACCTCGCCGAGCGGGCCGCGGCCGACTCC
AAGGCGTCCCAGTCCCGTTGGCTCGGCAGGCTGACGGCGGGTGAAGAGCGCGGCGAGTCTTCGACGGCGGCTCAG
CGGCGGAGCGGCCCAGGCGGCTACGGAACGCTCTCGTCCGTCTTCCCGGGCCTCTCCCTGTCCAAGTACTCGCGG
GCCCAGCGCGGACGGCTGCCGGAGGGCGTGGTGAAGCCGACGCAGTGGATCAAGAACACGGGGGAGCTCAAGATC
GAGCCCAAGGTGTGGCTGGCCAACGAGCGCACCTTTCTCAAGTGGCAGCACATCTGCGTGCTGCAGGGGAGCCTG
GCCTTGGGGCTCTACACGGCCGCGGGCAACGACACGGCGGCCGCCGTCATGAGCATCGTCTTGGTCGCCATTGCA
GCCTTTGCGGGCCTCTGGGGGTACTGGCTGCTGCGGACGCGGAGGAGGATGATTACGGAGAGGAGCGGAAAGGAC
TTTGACAAGATGCTGGGGCCCATGGTTATGAGCGGGGCGTTGATGGCGGCGCTGATGATGAATTTTGTCCTGCAG
TATCAAAAGTTTGTCGAGAGGGTTGGAGGGACGAGTCAAGGACGGGGGGGACTGGCATCGGATGAGCTG
Transcript >Ophio5|7087
ATGCGGTTCGGCAAGACGCTGCGGGAGGCCGTGTACGAGCCATGGAAGGAAGAGTACATGGACTATGGCAAGCTC
AAGGCGCTGCTGCACGAGGACAAGGCCGAGGAAGAAGAGTGGACCGAGGAGGACGAGAAGCGCTTCTGCGACGAA
ATCTTCAGCACCCAGCTTGACAAGGTGGCGCGCTTCCAGCAGCAGCGATTTGACGAGCTGCAGCGGCGCGTCGAC
AAGGCTTTCCGCACCTTAAGCGAGCTGGTTCCGGTTGAACAAGAGGCCGTCAAAGACGACAAGCAGCCAGCGGCC
GACAGAAAAGGCGACGGCGACAGCGACGGCCAGGCGGCGACGGCATCGCGCTTGCGGGAGCTCGAAGCCGAGCTC
GACGACATCACCAACGAGGTCAGAGAGCTCAAAAAGTACAGCAGCATCAACTACACCGGCTTCCTCAAGATGGTC
AAGAAGCACGACCGCAAGCGCGGCGACCGCTACCGCGTGCGGCCCATGATGCAGCTGGCCCTGGCGCAGCGGCCC
TTTAACTCGGAGCAGGGCTACTCTCCTCTCCTCAACAAGCTGTCCATCATGTACTTTGCCATCCGTCAACAGCTG
GAGGGTGGCGGCGGCAGCCAGGCGCCACCGGACCTCGAGAGCCCGGGCGAGACGCTTCACGGCGAGCGATACACG
GCCCACAAATTCTGGATCCATGGCGATAACCTCGTCGAGGTCAAGACGTTGATTCTCCGCCGGCTGCCAGCCCTC
GTCTACAGCGAGCAGTCGGCCAAAGAGCTGGACGGCAGGGACTCGCCCGCCATCACGTCACTGTATCTAGACAAC
CACAAGTTCGACCTCTACTCGGAAAAGGTGGACCGGAAATCCGAGGCCTCGACGCTCCGGCTGCGGTGGTACGGC
CAGCTCAGCGGCCGGCCCGACATTTTCGTCGAGCACAAGACGGTGGACGCCAAGGGCAACAGCCAGGAGCACAAC
TTTTCGACAAAGGACAAGTACATCATGCCCCTGCTCAAGGGCGACAACGTGACGGACAAGACGGCGCAGAAGATG
GAGCGGCAGGGCGTGTCGGCCGAGCAGGTCCAAGGCTACAAGGCGACGGTGGCGCAGACGCAGGCCCTGATTCGA
CAGAAGAAGCTATCGCCGGTGCTGAGGGCCAACTACGTCCGCACGGCGTTCCAGAAGCCGGCCGACGACCGGGTC
CGCATCTCCATCGACGCGGACCTGGTCTTTATCCGCGAGGACACGCTCGACGCCAGCCGTCCGTGTCGCGACCCC
GAGGAATGGCACCGGCTGGACATTGATAACAGCAACATGACGTATCCATTCAAGAATATGAGTCAGAGTGACGTG
TCCAATTTCCCCTACGCGGTGCTGCAGATCAAGCTCAAGGAGGACGGCAACCGGAAGCGGCCGTCGTGGGTCGAG
GACCTGATGGCCTCGCACCTGGTGCATCCGGCGCCGCGATTCTCCAAGTTCGTGCACGGCGTCGCGTCGCTCTTC
GACGACTACGTCAACAACCTGCCCTTTTGGCTGAGCGACCTGGAGAGGGACATCCGCAAGGACCCGCAGAGGGCC
TTTGAGGAGGAGGAGCAGCGGCGAGCGCAGCGGGCCGACGACGTCCAGGCCGTCGGCAGCCTCCTGGGGGGCACC
AAGCCGTCGTACAAGGCAGCGCAGAGCTCGCCGGTTGGGGACTCGTACCTCGCCGAGCGGGCCGCGGCCGACTCC
AAGGCGTCCCAGTCCCGTTGGCTCGGCAGGCTGACGGCGGGTGAAGAGCGCGGCGAGTCTTCGACGGCGGCTCAG
CGGCGGAGCGGCCCAGGCGGCTACGGAACGCTCTCGTCCGTCTTCCCGGGCCTCTCCCTGTCCAAGTACTCGCGG
GCCCAGCGCGGACGGCTGCCGGAGGGCGTGGTGAAGCCGACGCAGTGGATCAAGAACACGGGGGAGCTCAAGATC
GAGCCCAAGGTGTGGCTGGCCAACGAGCGCACCTTTCTCAAGTGGCAGCACATCTGCGTGCTGCAGGGGAGCCTG
GCCTTGGGGCTCTACACGGCCGCGGGCAACGACACGGCGGCCGCCGTCATGAGCATCGTCTTGGTCGCCATTGCA
GCCTTTGCGGGCCTCTGGGGGTACTGGCTGCTGCGGACGCGGAGGAGGATGATTACGGAGAGGAGCGGAAAGGAC
TTTGACAAGATGCTGGGGCCCATGGTTATGAGCGGGGCGTTGATGGCGGCGCTGATGATGAATTTTGTCCTGCAG
TATCAAAAGTTTGTCGAGAGGGTTGGAGGGACGAGTCAAGGACGGGGGGGACTGGCATCGGATGAGCTGTAG
Gene >Ophio5|7087
ATGCGGTTCGGCAAGACGCTGCGGGAGGCCGTGTACGAGCCATGGAAGGAAGAGTACATGGACTATGGCAAGCTC
AAGGCGCTGCTGCACGAGGACAAGGCCGAGGAAGAAGAGTGGACCGAGGAGGACGAGAAGCGCTTCTGCGACGAA
ATCTTCAGCACCCAGCTTGACAAGGTGGCGCGCTTCCAGCAGCAGCGATTTGACGAGCTGCAGCGGCGCGTCGAC
AAGGCTTTCCGCACCTTAAGCGAGCTGGTTCCGGTTGAACAAGAGGCCGTCAAAGACGACAAGCAGCCAGCGGCC
GACAGAAAAGGCGACGGCGACAGCGACGGCCAGGCGGCGACGGCATCGCGCTTGCGGGAGCTCGAAGCCGAGCTC
GACGACATCACCAACGAGGTCAGAGAGCTCAAAAAGTACAGCAGCATCAACTACACCGGCTTCCTCAAGATGGTC
AAGAAGCACGACCGCAAGCGCGGCGACCGCTACCGCGTGCGGCCCATGATGCAGCTGGCCCTGGCGCAGCGGCCC
TTTAACTCGGAGCAGGGCTACTCTCCTCTCCTCAACAAGCTGTCCATCATGTACTTTGCCATCCGTCAACAGCTG
GAGGGTGGCGGCGGCAGCCAGGCGCCACCGGACCTCGAGAGCCCGGGCGAGACGCTTCACGGCGAGCGATACACG
GCCCACAAATGTGAGTCCTGGGGTTGTCTTGTTGGAGGAGCCATTCATCATCAGGCCGCTGACGCGCCGCCTCGG
CAGTCTGGATCCATGGCGATAACCTCGTCGAGGTCAAGACGTTGATTCTCCGCCGGCTGCCAGCCCTCGTCTACA
GCGAGCAGTCGGCCAAAGAGCTGGACGGCAGGGACTCGCCCGCCATCACGTCACTGTATCTAGACAACCACAAGT
TCGACCTCTACTCGGAAAAGGTGGACCGGAAATCCGAGGCCTCGACGCTCCGGCTGCGGTGGTACGGCCAGCTCA
GCGGCCGGCCCGACATTTTCGTCGAGCACAAGACGGTGGACGCCAAGGGCAACAGCCAGGAGCACAACTTTTCGA
CAAAGGACAAGTACATCATGCCCCTGCTCAAGGGCGACAACGTGACGGACAAGACGGCGCAGAAGATGGAGCGGC
AGGGCGTGTCGGCCGAGCAGGTCCAAGGCTACAAGGCGACGGTGGCGCAGACGCAGGCCCTGATTCGACAGAAGA
AGCTATCGCCGGTGCTGAGGGCCAACTACGTCCGCACGGCGTTCCAGAAGCCGGCCGACGACCGGGTCCGCATCT
CCATCGACGCGGACCTGGTCTTTATCCGCGAGGACACGCTCGACGCCAGCCGTCCGTGTCGCGACCCCGAGGAAT
GGCACCGGCTGGACATTGATAACAGCAACATGACGTATCCATTCAAGAATATGAGTCAGAGTGACGTGTCCAATT
TCCCCTACGCGGTGCTGCAGATCAAGCTCAAGGAGGACGGCAACCGGAAGCGGCCGTCGTGGGTCGAGGACCTGA
TGGCCTCGCACCTGGTGCATCCGGCGCCGCGATTCTCCAAGTTCGTGCACGGCGTCGCGTCGCTCTTCGACGACT
ACGTCAACAACCTGCCCTTTTGGCTGAGCGACCTGGAGAGGGACATCCGCAAGGACCCGCAGAGGGCCTTTGAGG
AGGAGGAGCAGCGGCGAGCGCAGCGGGCCGACGACGTCCAGGCCGTCGGCAGCCTCCTGGGGGGCACCAAGCCGT
CGTACAAGGCAGCGCAGAGCTCGCCGGTTGGGGACTCGTACCTCGCCGAGCGGGCCGCGGCCGACTCCAAGGCGT
CCCAGTCCCGTTGGCTCGGCAGGCTGACGGCGGGTGAAGAGCGCGGCGAGTCTTCGACGGCGGCTCAGCGGCGGA
GCGGCCCAGGCGGCTACGGAACGCTCTCGTCCGTCTTCCCGGGCCTCTCCCTGTCCAAGTACTCGCGGGCCCAGC
GCGGACGGCTGCCGGAGGGCGTGGTGAAGCCGACGCAGTGGATCAAGAACACGGGGGAGCTCAAGATCGAGCCCA
AGGTGTGGCTGGCCAACGAGCGCACCTTTCTCAAGTGGCAGCACATCTGCGTGCTGCAGGGGAGCCTGGCCTTGG
GGCTCTACACGGCCGCGGGCAACGACACGGCGGCCGCCGTCATGAGCATCGTCTTGGTCGCCATTGCAGCCTTTG
CGGGCCTCTGGGGGTACTGGCTGCTGCGGACGCGGAGGAGGATGATTACGGAGAGGAGCGGAAAGGACTTTGACA
AGATGCTGGGGCCCATGGTTATGAGCGGGGCGTTGATGGCGGCGCTGATGATGAATTTTGTCCTGCAGGTGAGTG
ATATTTTGATGGGAGAGCGAGAGAGAGAGAGAGAGAGATGGAGAGATGACGAGTGAGTGAGTGTGTGCTGACGCT
GGACATGCAGTATCAAAAGTTTGTCGAGAGGGTTGGAGGGACGAGTCAAGGACGGGGGGGACTGGCATCGGATGA
GCTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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