© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7077 |
| Gene name | |
| Location | scaffold_658:6583..7144 |
| Strand | - |
| Gene length (bp) | 561 |
| Transcript length (bp) | 561 |
| Coding sequence length (bp) | 558 |
| Protein length (aa) | 186 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00829 | Ribosomal_L21p | Ribosomal prokaryotic L21 protein | 4.1E-13 | 60 | 162 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P7D4|ACON2_SCHPO | Homocitrate dehydratase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP4H10.15 PE=3 SV=3 | 23 | 165 | 3.0E-23 |
| sp|P40858|RN49_YEAST | 54S ribosomal protein L49, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL49 PE=1 SV=2 | 53 | 165 | 3.0E-20 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005840 | ribosome | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0043229 | intracellular organelle | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0043226 | organelle | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 121.65 | 63.33 | 179.96 |
| CcL | In ants, during behavior modification | 112.04 | 57.44 | 166.63 |
| CcD | In ants, recently dead | 155.49 | 84.12 | 226.87 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.775090 | no |
| SC16a | CcD | 0.314883 | no |
| CcL | CcD | 0.178115 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7077 MINIPLPRPPPPEPKNAPNPTEGLVRPLALKKSHPKAPPTPIADSVRRLLPVLAAQPEHYITVHIHGFPYLVQEG DQIRLPFRMPGVVPGDVLRLNRASVLGSRDYTMKGAPHIDERVFVCRATVLGTESEPMRIKIKKKRRCRKKRQAK SKLRYTMLRISELSVVTPPAEEAAAEGDAAEREPAA |
| Coding | >Ophio5|7077 ATGATCAACATCCCACTGCCTCGGCCTCCTCCACCAGAACCCAAGAACGCGCCCAACCCGACAGAGGGACTGGTC CGGCCGCTCGCGTTGAAGAAGAGCCATCCGAAGGCGCCGCCGACGCCCATTGCCGACTCGGTCCGGCGGCTACTG CCCGTGCTGGCGGCGCAGCCGGAACACTACATTACCGTTCACATCCACGGCTTTCCTTACCTCGTGCAGGAAGGC GATCAGATTCGACTACCTTTTCGCATGCCCGGCGTTGTTCCCGGCGATGTGCTTCGCTTGAATCGTGCCAGCGTG CTGGGCAGCCGCGATTACACGATGAAGGGGGCGCCGCACATCGATGAGCGGGTCTTTGTGTGCCGCGCCACTGTC CTCGGGACCGAATCGGAGCCGATGCGCATCAAGATTAAAAAGAAGCGGCGGTGTCGCAAGAAGCGTCAGGCGAAA TCCAAGCTCCGCTACACCATGTTGCGGATATCCGAGCTCAGCGTTGTCACGCCGCCTGCTGAGGAAGCTGCAGCT GAGGGAGATGCGGCCGAGAGAGAGCCAGCTGCA |
| Transcript | >Ophio5|7077 ATGATCAACATCCCACTGCCTCGGCCTCCTCCACCAGAACCCAAGAACGCGCCCAACCCGACAGAGGGACTGGTC CGGCCGCTCGCGTTGAAGAAGAGCCATCCGAAGGCGCCGCCGACGCCCATTGCCGACTCGGTCCGGCGGCTACTG CCCGTGCTGGCGGCGCAGCCGGAACACTACATTACCGTTCACATCCACGGCTTTCCTTACCTCGTGCAGGAAGGC GATCAGATTCGACTACCTTTTCGCATGCCCGGCGTTGTTCCCGGCGATGTGCTTCGCTTGAATCGTGCCAGCGTG CTGGGCAGCCGCGATTACACGATGAAGGGGGCGCCGCACATCGATGAGCGGGTCTTTGTGTGCCGCGCCACTGTC CTCGGGACCGAATCGGAGCCGATGCGCATCAAGATTAAAAAGAAGCGGCGGTGTCGCAAGAAGCGTCAGGCGAAA TCCAAGCTCCGCTACACCATGTTGCGGATATCCGAGCTCAGCGTTGTCACGCCGCCTGCTGAGGAAGCTGCAGCT GAGGGAGATGCGGCCGAGAGAGAGCCAGCTGCATGA |
| Gene | >Ophio5|7077 ATGATCAACATCCCACTGCCTCGGCCTCCTCCACCAGAACCCAAGAACGCGCCCAACCCGACAGAGGGACTGGTC CGGCCGCTCGCGTTGAAGAAGAGCCATCCGAAGGCGCCGCCGACGCCCATTGCCGACTCGGTCCGGCGGCTACTG CCCGTGCTGGCGGCGCAGCCGGAACACTACATTACCGTTCACATCCACGGCTTTCCTTACCTCGTGCAGGAAGGC GATCAGATTCGACTACCTTTTCGCATGCCCGGCGTTGTTCCCGGCGATGTGCTTCGCTTGAATCGTGCCAGCGTG CTGGGCAGCCGCGATTACACGATGAAGGGGGCGCCGCACATCGATGAGCGGGTCTTTGTGTGCCGCGCCACTGTC CTCGGGACCGAATCGGAGCCGATGCGCATCAAGATTAAAAAGAAGCGGCGGTGTCGCAAGAAGCGTCAGGCGAAA TCCAAGCTCCGCTACACCATGTTGCGGATATCCGAGCTCAGCGTTGTCACGCCGCCTGCTGAGGAAGCTGCAGCT GAGGGAGATGCGGCCGAGAGAGAGCCAGCTGCATGA |