Protein ID | Ophio5|7034 |
Gene name | |
Location | scaffold_65:35480..36214 |
Strand | + |
Gene length (bp) | 734 |
Transcript length (bp) | 528 |
Coding sequence length (bp) | 525 |
Protein length (aa) | 175 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF02064 | MAS20 | MAS20 protein import receptor | 5.9E-42 | 14 | 144 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P35848|TOM20_NEUCR | Mitochondrial import receptor subunit tom20 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tom20 PE=3 SV=1 | 21 | 175 | 3.0E-48 |
sp|O14225|TOM20_SCHPO | Mitochondrial import receptor subunit tom20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tom20 PE=3 SV=1 | 14 | 151 | 2.0E-29 |
sp|P35180|TOM20_YEAST | Mitochondrial import receptor subunit TOM20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOM20 PE=1 SV=1 | 1 | 148 | 1.0E-23 |
GO Term | Description | Terminal node |
---|---|---|
GO:0006605 | protein targeting | Yes |
GO:0005742 | mitochondrial outer membrane translocase complex | Yes |
GO:0006886 | intracellular protein transport | Yes |
GO:0008150 | biological_process | No |
GO:0045184 | establishment of protein localization | No |
GO:0098798 | mitochondrial protein-containing complex | No |
GO:0070727 | cellular macromolecule localization | No |
GO:0032991 | protein-containing complex | No |
GO:0071705 | nitrogen compound transport | No |
GO:0051234 | establishment of localization | No |
GO:0006810 | transport | No |
GO:0051179 | localization | No |
GO:0098799 | outer mitochondrial membrane protein complex | No |
GO:0033036 | macromolecule localization | No |
GO:0009987 | cellular process | No |
GO:0051641 | cellular localization | No |
GO:0051649 | establishment of localization in cell | No |
GO:0008104 | protein localization | No |
GO:0005575 | cellular_component | No |
GO:0046907 | intracellular transport | No |
GO:0071702 | organic substance transport | No |
GO:0098796 | membrane protein complex | No |
GO:0015031 | protein transport | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Mitochondrion | Mitochondrial transit peptide | 0.1131 | 0.1889 | 0.1763 | 0.0354 | 0.8657 | 0.0518 | 0.1864 | 0.2691 | 0.1255 | 0.5987 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 5 | 27 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2610 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|7034 MVQTSTVLTASAVSLAATAVVAYAVYFDYRRRTVPEFRRELRRNERRQARAEREAAEASTRRRREAIKAKVDAAK QDGFPTGVEERETFFNDQVGTGELLSADPSSAVEAALAFYKGLKVYPAPGELIKIYDNTVPKPILDILAEMIAYD SSLDIRSRSTGQGIDLGEIPNVGLD |
Coding | >Ophio5|7034 ATGGTGCAGACCTCGACCGTCCTGACGGCATCGGCCGTGTCTCTCGCCGCCACCGCCGTAGTCGCATACGCCGTC TACTTCGATTATCGCCGCCGCACCGTCCCCGAGTTCCGCCGTGAATTGCGGAGAAACGAGCGGCGTCAGGCTCGC GCCGAGAGGGAAGCGGCCGAGGCGTCGACGCGCCGTCGTCGGGAAGCTATCAAAGCCAAGGTCGACGCCGCCAAG CAAGACGGTTTCCCCACCGGCGTCGAGGAGCGCGAGACCTTTTTTAACGACCAGGTCGGCACTGGGGAGTTGCTG AGCGCCGATCCCTCGAGCGCCGTCGAAGCGGCTCTGGCTTTCTACAAGGGCCTCAAGGTCTATCCCGCACCCGGC GAGCTCATCAAAATCTACGACAATACCGTACCCAAGCCTATACTAGATATCCTGGCCGAGATGATCGCCTACGAC TCCAGCCTCGACATCCGCTCGCGCTCCACCGGCCAAGGCATCGACCTGGGCGAGATCCCCAACGTCGGCCTCGAC |
Transcript | >Ophio5|7034 ATGGTGCAGACCTCGACCGTCCTGACGGCATCGGCCGTGTCTCTCGCCGCCACCGCCGTAGTCGCATACGCCGTC TACTTCGATTATCGCCGCCGCACCGTCCCCGAGTTCCGCCGTGAATTGCGGAGAAACGAGCGGCGTCAGGCTCGC GCCGAGAGGGAAGCGGCCGAGGCGTCGACGCGCCGTCGTCGGGAAGCTATCAAAGCCAAGGTCGACGCCGCCAAG CAAGACGGTTTCCCCACCGGCGTCGAGGAGCGCGAGACCTTTTTTAACGACCAGGTCGGCACTGGGGAGTTGCTG AGCGCCGATCCCTCGAGCGCCGTCGAAGCGGCTCTGGCTTTCTACAAGGGCCTCAAGGTCTATCCCGCACCCGGC GAGCTCATCAAAATCTACGACAATACCGTACCCAAGCCTATACTAGATATCCTGGCCGAGATGATCGCCTACGAC TCCAGCCTCGACATCCGCTCGCGCTCCACCGGCCAAGGCATCGACCTGGGCGAGATCCCCAACGTCGGCCTCGAC TAG |
Gene | >Ophio5|7034 ATGGTGCAGACCTCGACCGTCCTGACGGCATCGGCCGTGTCTCTCGCCGCCACCGCCGTAGTCGGTAAGCAGAAC AGAACAAAAATTAAAAAAAAACTGTCCAATGGGTCGACGGACGCCTGAAACGTCTCGTCACCAGCATACGCCGTC TACTTCGATTATCGCCGCCGCACCGTCCCCGAGTTCCGCCGTGAATTGCGGAGAAACGAGCGGCGTCAGGCTCGC GCCGAGAGGGAAGCGGCCGAGGCGTCGACGCGCCGTCGTCGGGAAGCTATCAAAGCCAAGGTCGACGCCGCCAAG CAAGACGGTTTCCCCACCGGCGTCGAGGAGCGCGAGACCTTTTTTAACGACCAGGTCGGCACTGGGGAGTTGCTG AGCGCCGATCGTATGACTTCTCCTTGCCATCGGATAATGCGGCCGTTACTGGTTACTGACGGACTTGTCTGCAGC CTCGAGCGCCGTCGAAGCGGCTCTGGCTTTCTACAAGGGCCTCAAGGTCTATCCCGCACCCGGCGAGCTCATCAA AATCTACGACAATACCGTACCCAAGGTTTGTCTTTTTACTTGCTTTACCCCCCCCCCCCCTATCGAACCGTTGCT GACGTCTCCAACTCCAGCCTATACTAGATATCCTGGCCGAGATGATCGCCTACGACTCCAGCCTCGACATCCGCT CGCGCTCCACCGGCCAAGGCATCGACCTGGGCGAGATCCCCAACGTCGGCCTCGACTAG |