© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7020 |
| Gene name | |
| Location | scaffold_65:916..3223 |
| Strand | - |
| Gene length (bp) | 2307 |
| Transcript length (bp) | 2061 |
| Coding sequence length (bp) | 2061 |
| Protein length (aa) | 687 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00172 | Zn_clus | Fungal Zn(2)-Cys(6) binuclear cluster domain | 8.4E-11 | 38 | 73 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P28348|NIRA_EMENI | Nitrogen assimilation transcription factor nirA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nirA PE=3 SV=1 | 28 | 566 | 8.0E-16 |
| sp|P28349|NIT4_NEUCR | Nitrogen assimilation transcription factor nit-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nit-4 PE=3 SV=2 | 29 | 560 | 3.0E-15 |
| sp|Q9HDX1|YKN4_SCHPO | Uncharacterized transcriptional regulatory protein PB1A11.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A11.04c PE=3 SV=1 | 27 | 94 | 4.0E-07 |
| sp|P10563|QUTA_EMENI | Quinic acid utilization activator OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=qutA PE=3 SV=2 | 28 | 92 | 6.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | Yes |
| GO:0008150 | biological_process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0140110 | transcription regulator activity | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:0046872 | metal ion binding | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0005488 | binding | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0003700 | DNA-binding transcription factor activity | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.4076 | 0.8722 | 0.1189 | 0.0133 | 0.0534 | 0.0025 | 0.033 | 0.048 | 0.0417 | 0.09 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Fungal Specific TF |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 27.73 | 14.71 | 40.74 |
| CcL | In ants, during behavior modification | 8.09 | 3.20 | 12.98 |
| CcD | In ants, recently dead | 7.45 | 2.84 | 12.06 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.826605 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 110 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7020 MRKYPSLRPYDRGDAPEPERQALQTLLPKRRRIGVSVACDSCRQKKIRCDGQRPNCSACESKDAECSYRDLSRLS PESRSLLLEVIHLLNGLPQEEQSSVVRILKNEDDASVILSTLRGGMDSKERPSDHATAMAIMDSSFQAIELESQN PNAYLFLPPLHAETLQGASYRRLITSGATLGAASPQRSEYGVAGSTITCDDRLHFLNIRHWTPVPIPNGVAARAI SLYLETDHPLLGNFDPDLFLADLTSAKTDYCSSVLVNALLYWACQMYSALDTTVDDLALCFCTEAERLWDTEKNN DSVLNLAAAQLLSMGYLGQGRNHVVLSYLRQASDMAVRMGLFGGDEDDRAAARMQKLTSEAVSAHLHAAWGTFNW ITLMSLFYRQPGMHCSYHPPCVPIPGEESMDTAPSSPASTQASQRDNMKSLFPHLCRFWRIMHEVSLAYEEQKHP PGFKGTLAFAEFKFRELLAWSNRLPRHLSRDDQHPHYVQVLHLWFHTAILDIFRPWIDGSPGQSRLRTFTSIVSS PIVVYAASINQLKQLIVNYRLNFVASTYTILWHSALIYLSNAILQLPREENWLFYFLVCVYSYERLRRPWRVTRA IGTALLSLAMRNGSLSSDRARAILRDLDRDDFTGIHVLGKIRATFMSDLDMARCDPGQATVEKQAGEFEQYALLE EFTNEFGDEDA* |
| Coding | >Ophio5|7020 ATGAGGAAATACCCGTCTCTCCGTCCTTATGACCGCGGCGATGCCCCTGAGCCGGAACGCCAGGCTTTGCAGACA TTGCTGCCGAAGCGGCGTCGCATCGGCGTGTCAGTGGCCTGTGACTCGTGCCGACAAAAGAAGATCCGGTGTGAC GGCCAGCGCCCAAACTGCTCCGCCTGCGAGAGCAAGGACGCTGAGTGTTCGTACCGAGATTTGAGTCGGCTGAGC CCAGAGTCGCGGAGCCTGCTGCTGGAAGTCATACATCTCCTCAATGGGCTCCCGCAGGAAGAGCAGTCTTCCGTC GTCAGGATTCTCAAGAATGAAGACGACGCGTCCGTCATCCTTTCCACCCTGAGAGGCGGCATGGACAGCAAGGAA CGGCCGTCGGATCATGCGACGGCTATGGCCATCATGGACAGCTCCTTTCAGGCCATCGAGCTCGAGTCCCAGAAC CCGAATGCCTATCTCTTCCTGCCGCCTCTTCATGCTGAGACGCTGCAAGGGGCGTCCTACCGACGCCTCATCACG TCCGGAGCAACTTTGGGCGCGGCTTCGCCCCAGCGTAGCGAGTATGGTGTTGCGGGCTCGACCATCACATGCGAT GACCGGCTTCATTTCTTGAACATTCGTCATTGGACTCCTGTCCCGATACCGAACGGGGTGGCTGCCCGGGCCATT TCCCTCTATCTGGAGACTGACCATCCTCTGCTCGGCAACTTCGACCCCGACCTCTTCCTAGCGGACCTGACGAGC GCTAAAACCGACTACTGTTCCTCGGTCCTCGTCAATGCCCTGCTGTACTGGGCGTGTCAAATGTATAGCGCCCTG GACACCACCGTCGACGACCTTGCGCTGTGCTTCTGCACCGAGGCTGAGCGCCTCTGGGATACGGAAAAGAACAAC GACTCGGTCCTCAACCTGGCTGCTGCACAGCTCCTGAGCATGGGCTACCTGGGTCAGGGCAGAAACCACGTGGTG CTGTCGTACCTCAGGCAGGCTTCGGACATGGCTGTGCGGATGGGCCTGTTTGGCGGCGATGAAGATGACCGGGCC GCAGCGAGGATGCAAAAGTTGACGAGCGAAGCTGTCAGTGCCCATCTTCACGCCGCCTGGGGAACCTTTAACTGG ATAACCCTCATGTCACTCTTCTACCGCCAGCCGGGCATGCACTGCTCTTACCACCCGCCCTGCGTACCGATTCCC GGGGAGGAGTCGATGGATACGGCCCCGAGCTCGCCCGCCTCGACTCAAGCGTCGCAGAGGGACAACATGAAGAGC CTATTTCCTCACCTCTGTCGGTTCTGGCGGATCATGCACGAGGTGAGCTTGGCTTACGAGGAGCAGAAGCATCCG CCGGGATTCAAGGGAACGCTTGCCTTTGCCGAGTTCAAGTTCCGCGAGCTGCTTGCGTGGAGCAACAGGTTGCCG CGGCACCTGTCGAGGGACGACCAGCACCCGCATTACGTCCAGGTGTTGCACCTCTGGTTCCATACCGCAATTCTC GACATCTTCAGGCCGTGGATCGACGGCTCGCCGGGTCAGAGTCGACTACGAACCTTTACCAGCATCGTCAGCTCG CCGATCGTCGTCTACGCCGCTTCGATAAACCAGCTGAAGCAACTCATCGTCAACTACAGGCTCAACTTTGTCGCC TCGACCTACACCATACTCTGGCACTCGGCGCTCATCTACCTCAGCAACGCGATCCTGCAGCTGCCCAGGGAGGAA AACTGGCTGTTTTACTTTCTGGTGTGCGTATACAGCTACGAACGACTCCGGCGGCCGTGGCGCGTGACGCGGGCC ATCGGCACCGCCCTCCTTTCCCTGGCCATGCGCAACGGCAGCCTGTCGAGTGATAGAGCGAGAGCGATCCTGAGA GACCTGGATCGTGACGACTTTACTGGCATCCACGTGCTGGGCAAGATCAGGGCTACCTTTATGTCTGACTTGGAT ATGGCGAGGTGTGATCCGGGCCAGGCGACGGTGGAAAAGCAGGCTGGAGAATTTGAGCAGTATGCTCTGCTGGAG GAGTTTACGAATGAGTTTGGAGATGAGGATGCTTGA |
| Transcript | >Ophio5|7020 ATGAGGAAATACCCGTCTCTCCGTCCTTATGACCGCGGCGATGCCCCTGAGCCGGAACGCCAGGCTTTGCAGACA TTGCTGCCGAAGCGGCGTCGCATCGGCGTGTCAGTGGCCTGTGACTCGTGCCGACAAAAGAAGATCCGGTGTGAC GGCCAGCGCCCAAACTGCTCCGCCTGCGAGAGCAAGGACGCTGAGTGTTCGTACCGAGATTTGAGTCGGCTGAGC CCAGAGTCGCGGAGCCTGCTGCTGGAAGTCATACATCTCCTCAATGGGCTCCCGCAGGAAGAGCAGTCTTCCGTC GTCAGGATTCTCAAGAATGAAGACGACGCGTCCGTCATCCTTTCCACCCTGAGAGGCGGCATGGACAGCAAGGAA CGGCCGTCGGATCATGCGACGGCTATGGCCATCATGGACAGCTCCTTTCAGGCCATCGAGCTCGAGTCCCAGAAC CCGAATGCCTATCTCTTCCTGCCGCCTCTTCATGCTGAGACGCTGCAAGGGGCGTCCTACCGACGCCTCATCACG TCCGGAGCAACTTTGGGCGCGGCTTCGCCCCAGCGTAGCGAGTATGGTGTTGCGGGCTCGACCATCACATGCGAT GACCGGCTTCATTTCTTGAACATTCGTCATTGGACTCCTGTCCCGATACCGAACGGGGTGGCTGCCCGGGCCATT TCCCTCTATCTGGAGACTGACCATCCTCTGCTCGGCAACTTCGACCCCGACCTCTTCCTAGCGGACCTGACGAGC GCTAAAACCGACTACTGTTCCTCGGTCCTCGTCAATGCCCTGCTGTACTGGGCGTGTCAAATGTATAGCGCCCTG GACACCACCGTCGACGACCTTGCGCTGTGCTTCTGCACCGAGGCTGAGCGCCTCTGGGATACGGAAAAGAACAAC GACTCGGTCCTCAACCTGGCTGCTGCACAGCTCCTGAGCATGGGCTACCTGGGTCAGGGCAGAAACCACGTGGTG CTGTCGTACCTCAGGCAGGCTTCGGACATGGCTGTGCGGATGGGCCTGTTTGGCGGCGATGAAGATGACCGGGCC GCAGCGAGGATGCAAAAGTTGACGAGCGAAGCTGTCAGTGCCCATCTTCACGCCGCCTGGGGAACCTTTAACTGG ATAACCCTCATGTCACTCTTCTACCGCCAGCCGGGCATGCACTGCTCTTACCACCCGCCCTGCGTACCGATTCCC GGGGAGGAGTCGATGGATACGGCCCCGAGCTCGCCCGCCTCGACTCAAGCGTCGCAGAGGGACAACATGAAGAGC CTATTTCCTCACCTCTGTCGGTTCTGGCGGATCATGCACGAGGTGAGCTTGGCTTACGAGGAGCAGAAGCATCCG CCGGGATTCAAGGGAACGCTTGCCTTTGCCGAGTTCAAGTTCCGCGAGCTGCTTGCGTGGAGCAACAGGTTGCCG CGGCACCTGTCGAGGGACGACCAGCACCCGCATTACGTCCAGGTGTTGCACCTCTGGTTCCATACCGCAATTCTC GACATCTTCAGGCCGTGGATCGACGGCTCGCCGGGTCAGAGTCGACTACGAACCTTTACCAGCATCGTCAGCTCG CCGATCGTCGTCTACGCCGCTTCGATAAACCAGCTGAAGCAACTCATCGTCAACTACAGGCTCAACTTTGTCGCC TCGACCTACACCATACTCTGGCACTCGGCGCTCATCTACCTCAGCAACGCGATCCTGCAGCTGCCCAGGGAGGAA AACTGGCTGTTTTACTTTCTGGTGTGCGTATACAGCTACGAACGACTCCGGCGGCCGTGGCGCGTGACGCGGGCC ATCGGCACCGCCCTCCTTTCCCTGGCCATGCGCAACGGCAGCCTGTCGAGTGATAGAGCGAGAGCGATCCTGAGA GACCTGGATCGTGACGACTTTACTGGCATCCACGTGCTGGGCAAGATCAGGGCTACCTTTATGTCTGACTTGGAT ATGGCGAGGTGTGATCCGGGCCAGGCGACGGTGGAAAAGCAGGCTGGAGAATTTGAGCAGTATGCTCTGCTGGAG GAGTTTACGAATGAGTTTGGAGATGAGGATGCTTGA |
| Gene | >Ophio5|7020 ATGAGGAAATACCCGTCTCTCCGTCCTTATGACCGCGGCGATGCCCCTGAGCCGGAACGCCAGGCTTTGCAGACA TTGCTGCCGAAGCGGCGTCGCATCGGCGTGTCAGTGGCCTGTGACTCGTGCCGACAAAAGAAGATCCGGGTAGGT GATGGATGCCACGTCTCGGTTGCCGTTGTCTGATGGGATAGGATCGATGCAGTGTGACGGCCAGCGCCCAAACTG CTCCGCCTGCGAGAGCAAGGACGCTGAGTGTTCGTACCGAGATTTGAGTCGGCTGAGCCCAGAGTCGCGGAGCCT GCTGCTGGAAGTCATACATCTCCTCAATGGGCTCCCGCAGGAAGAGCAGTCTTCCGTCGTCAGGATTCTCAAGAA TGAAGACGACGCGTCCGTCATCCTTTCCACCCTGAGAGGCGGCATGGACAGCAAGGAACGGCCGTCGGATCATGC GACGGCTATGGCCATCATGGACAGCTCCTTTCAGGCCATCGAGCTCGAGTCCCAGAACCCGAATGCCTATCTCTT CCTGCCGCCTCTTCATGCTGAGACGCTGCAAGGGGCGTCCTACCGACGCCTCATCACGTCCGGAGCAACTTTGGG CGCGGCTTCGCCCCAGCGTAGCGAGTATGGTGTTGCGGGCTCGACCATCACATGCGATGACCGGCTTCATTTCTT GAACATTCGTCATTGGACTCCTGTCCCGATACCGAACGGGGTGGCTGCCCGGGCCATTTCCCTCTATCTGGAGAC TGACCATCCTCTGCTCGGCAACTTCGACCCCGACCTCTTCCTAGCGGACCTGACGAGCGCTAAAACCGACTACTG TTCCTCGGTCCTCGTCAATGCCCTGCTGTACTGGGCGTGTGTAAGATCCGAGCGAGTACGGAGAGAATCGTCGGC CACTGACAGCATCAACAACAGCAAATGTATAGCGCCCTGGACACCACCGTCGACGACCTTGCGCTGTGCTTCTGC ACCGAGGCTGAGCGCCTCTGGGATACGGAAAAGAACAACGACTCGGTCCTCAACCTGGCTGCTGCACAGCTCCTG AGCATGGGCTACCTGGGTCAGGGCAGAAACCACGTGGTGCTGTCGTACCTCAGGCAGGCTTCGGACATGGCTGTG CGGATGGGCCTGTTTGGCGGCGATGAAGATGACCGGGCCGCAGCGAGGATGCAAAAGTTGACGAGCGAAGCTGTC AGTGCCCATCTTCACGCCGCCTGGGGAACCTTTAACTGGATAACGTAGGCTGTGCCCCCTTCCCATCCCGACAGC TAAGCTGCTCTCGATGACTTACAACGAAACCTTTCAGCCTCATGTCACTCTTCTACCGCCAGCCGGGCATGCACT GCTCTTACCACCCGCCCTGCGTACCGATTCCCGGGGAGGAGTCGATGGATACGGCCCCGAGCTCGCCCGCCTCGA CTCAAGCGTCGCAGAGGGACAACATGAAGAGCCTATTTCCTCACCTCTGTCGGTTCTGGCGGATCATGCACGAGG TGAGCTTGGCTTACGAGGAGCAGAAGCATCCGCCGGGATTCAAGGGAACGCTTGCCTTTGCCGAGTTCAAGTTCC GCGAGCTGCTTGCGTGGAGCAACAGGTTGCCGCGGCACCTGTCGAGGGACGACCAGCACCCGCATTACGTCCAGG TGTTGCAGTGAGTGGCTGGCATCGGAAGCAAACCAACTTGAGCACTAACACACCTGCTTCTAACCCAATAGCCTC TGGTTCCATACCGCAATTCTCGACATCTTCAGGCCGTGGATCGACGGCTCGCCGGGTCAGAGTCGACTACGAACC TTTACCAGCATCGTCAGCTCGCCGATCGTCGTCTACGCCGCTTCGATAAACCAGCTGAAGCAACTCATCGTCAAC TACAGGCTCAACTTTGTCGCCTCGACCTACACCATACTCTGGCACTCGGCGCTCATCTACCTCAGCAACGCGATC CTGCAGCTGCCCAGGGAGGAAAACTGGCTGTTTTACTTTCTGGTGTGCGTATACAGCTACGAACGACTCCGGCGG CCGTGGCGCGTGACGCGGGCCATCGGCACCGCCCTCCTTTCCCTGGCCATGCGCAACGGCAGCCTGTCGAGTGAT AGAGCGAGAGCGATCCTGAGAGACCTGGATCGTGACGACTTTACTGGCATCCACGTGCTGGGCAAGATCAGGGCT ACCTTTATGTCTGACTTGGATATGGCGAGGTGTGATCCGGGCCAGGCGACGGTGGAAAAGCAGGCTGGAGAATTT GAGCAGTATGCTCTGCTGGAGGAGTTTACGAATGAGTTTGGAGATGAGGATGCTTGA |