Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|7014
Gene name
Locationscaffold_648:4451..4967
Strand+
Gene length (bp)516
Transcript length (bp)516
Coding sequence length (bp)513
Protein length (aa) 171

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12716 Apq12 Nuclear pore assembly and biogenesis 4.0E-09 71 117

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

Domain # Start End Length
1 66 88 22
2 101 123 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|7014
MEAYIFSLVAGLLPPDMAAAAHHHLLRPDSPLQSCKRQVAASARAAVVAIADVATRLLAASDNQGGMAGGIALLV
LLAVFMLLLRWVGRLVLWWTRFTLRLASWAVVVALCACVWQRGLAATVRDVGGGGLALMRYLSLLRDVWLAEYSR
YEVQQRQQQQFSSSRARGSAW
Coding >Ophio5|7014
ATGGAGGCCTACATCTTCAGCCTCGTCGCCGGGCTGCTCCCCCCGGACATGGCCGCGGCAGCGCACCACCACCTC
CTCCGTCCCGATTCACCCCTCCAGTCCTGCAAGCGCCAAGTAGCCGCCTCGGCGCGCGCCGCCGTCGTCGCCATT
GCCGACGTGGCCACCCGCCTGCTCGCCGCCTCGGATAACCAGGGCGGCATGGCGGGTGGCATCGCCCTGCTGGTG
CTTCTCGCCGTCTTTATGCTGCTGCTGCGCTGGGTCGGCCGTCTGGTCCTGTGGTGGACCCGTTTCACGCTGCGG
CTCGCATCGTGGGCTGTCGTCGTCGCCCTCTGCGCCTGTGTTTGGCAGCGTGGCCTGGCGGCTACCGTCCGCGAC
GTCGGAGGAGGAGGTCTGGCCTTGATGCGATACCTTTCTCTTTTGCGCGATGTCTGGCTCGCCGAGTACAGTCGC
TACGAGGTTCAACAGAGGCAGCAGCAGCAGTTTTCTTCTTCTCGCGCCAGGGGTTCCGCCTGG
Transcript >Ophio5|7014
ATGGAGGCCTACATCTTCAGCCTCGTCGCCGGGCTGCTCCCCCCGGACATGGCCGCGGCAGCGCACCACCACCTC
CTCCGTCCCGATTCACCCCTCCAGTCCTGCAAGCGCCAAGTAGCCGCCTCGGCGCGCGCCGCCGTCGTCGCCATT
GCCGACGTGGCCACCCGCCTGCTCGCCGCCTCGGATAACCAGGGCGGCATGGCGGGTGGCATCGCCCTGCTGGTG
CTTCTCGCCGTCTTTATGCTGCTGCTGCGCTGGGTCGGCCGTCTGGTCCTGTGGTGGACCCGTTTCACGCTGCGG
CTCGCATCGTGGGCTGTCGTCGTCGCCCTCTGCGCCTGTGTTTGGCAGCGTGGCCTGGCGGCTACCGTCCGCGAC
GTCGGAGGAGGAGGTCTGGCCTTGATGCGATACCTTTCTCTTTTGCGCGATGTCTGGCTCGCCGAGTACAGTCGC
TACGAGGTTCAACAGAGGCAGCAGCAGCAGTTTTCTTCTTCTCGCGCCAGGGGTTCCGCCTGGTGA
Gene >Ophio5|7014
ATGGAGGCCTACATCTTCAGCCTCGTCGCCGGGCTGCTCCCCCCGGACATGGCCGCGGCAGCGCACCACCACCTC
CTCCGTCCCGATTCACCCCTCCAGTCCTGCAAGCGCCAAGTAGCCGCCTCGGCGCGCGCCGCCGTCGTCGCCATT
GCCGACGTGGCCACCCGCCTGCTCGCCGCCTCGGATAACCAGGGCGGCATGGCGGGTGGCATCGCCCTGCTGGTG
CTTCTCGCCGTCTTTATGCTGCTGCTGCGCTGGGTCGGCCGTCTGGTCCTGTGGTGGACCCGTTTCACGCTGCGG
CTCGCATCGTGGGCTGTCGTCGTCGCCCTCTGCGCCTGTGTTTGGCAGCGTGGCCTGGCGGCTACCGTCCGCGAC
GTCGGAGGAGGAGGTCTGGCCTTGATGCGATACCTTTCTCTTTTGCGCGATGTCTGGCTCGCCGAGTACAGTCGC
TACGAGGTTCAACAGAGGCAGCAGCAGCAGTTTTCTTCTTCTCGCGCCAGGGGTTCCGCCTGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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