© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|7003 |
| Gene name | |
| Location | scaffold_643:8259..10710 |
| Strand | - |
| Gene length (bp) | 2451 |
| Transcript length (bp) | 2073 |
| Coding sequence length (bp) | 2070 |
| Protein length (aa) | 690 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04082 | Fungal_trans | Fungal specific transcription factor domain | 8.7E-23 | 288 | 487 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09922|YAKB_SCHPO | Uncharacterized transcriptional regulatory protein C1F7.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F7.11c PE=3 SV=1 | 273 | 620 | 1.0E-11 |
| sp|P39529|YJU6_YEAST | Putative transcriptional regulatory protein YJL206C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJL206C PE=2 SV=1 | 264 | 476 | 2.0E-09 |
| sp|P15699|AMDR_EMENI | Acetamidase regulatory protein OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=amdR PE=3 SV=2 | 180 | 474 | 2.0E-08 |
| sp|Q9UTN0|YII3_SCHPO | Uncharacterized transcriptional regulatory protein C139.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC139.03 PE=3 SV=1 | 277 | 462 | 4.0E-08 |
| sp|P28348|NIRA_EMENI | Nitrogen assimilation transcription factor nirA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nirA PE=3 SV=1 | 267 | 488 | 1.0E-06 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09922|YAKB_SCHPO | Uncharacterized transcriptional regulatory protein C1F7.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F7.11c PE=3 SV=1 | 273 | 620 | 1.0E-11 |
| sp|P39529|YJU6_YEAST | Putative transcriptional regulatory protein YJL206C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJL206C PE=2 SV=1 | 264 | 476 | 2.0E-09 |
| sp|P15699|AMDR_EMENI | Acetamidase regulatory protein OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=amdR PE=3 SV=2 | 180 | 474 | 2.0E-08 |
| sp|Q9UTN0|YII3_SCHPO | Uncharacterized transcriptional regulatory protein C139.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC139.03 PE=3 SV=1 | 277 | 462 | 4.0E-08 |
| sp|P28348|NIRA_EMENI | Nitrogen assimilation transcription factor nirA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nirA PE=3 SV=1 | 267 | 488 | 1.0E-06 |
| sp|Q06157|AMDR_ASPOR | Acetamidase regulatory protein OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=amdR PE=2 SV=2 | 276 | 474 | 1.0E-06 |
| sp|Q4WK35|AMDR_ASPFU | Acetamidase regulatory protein OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=amdR PE=3 SV=1 | 220 | 474 | 2.0E-06 |
| sp|P40467|ASG1_YEAST | Activator of stress genes 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ASG1 PE=1 SV=1 | 272 | 492 | 2.0E-06 |
| sp|P08657|LAC9_KLULA | Lactose regulatory protein LAC9 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=LAC9 PE=1 SV=1 | 290 | 505 | 7.0E-06 |
| sp|P36598|THI1_SCHPO | Thiamine repressible genes regulatory protein thi1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=thi1 PE=1 SV=2 | 275 | 471 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:0046872 | metal ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0008152 | metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0097659 | nucleic acid-templated transcription | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Fungal Specific TF |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 29.95 | 16.06 | 43.84 |
| CcL | In ants, during behavior modification | 24.25 | 12.59 | 35.92 |
| CcD | In ants, recently dead | 16.36 | 7.78 | 24.95 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.390571 | no |
| SC16a | CcD | 0.009817 | yes |
| CcL | CcD | 0.117194 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|7003 MPQLGQPLVRRRLRLPIQCLRTVRLSRRSLAPLTLSALLRPPLQARSPHLFIPSARPSVWLSAVQAEAVRTPMEL HRGGRHNHHHHHQHTLHHTQRRQNEPSSTPASAVATAVAAAEAEYDGADSPRKKQKRNKPTLSCHELARRIASVL RLTTLRISATGDGLIASLRQTECRYAYVANLLEETSRSAANGRRMTRPPKKKAAAERRPTIPNIADRGAIDDHDA SSRGAVALSIGLLSHVPYSGTSASNVFGIGSEHPFANYWTCEGGLPEVISVLPEKAQADGLLARYFECVDPIYPM IYRQTFYAEYEHFWQLASGQRDARDARDETDAAFVGLVFVMLALGTQFVTTTSAKERKQTAEFYASASNQALRLS SYLSTASLCSIQAMVLITYFLINDNHASDGWAFAGILIRQAYAMGLHRDPNIVTPNASPFEKQQRRKVWQAVLLQ DTFLTVLLSLPPSATHTDVSVDDLLDNSSSIASSDPTDTAYIRGSWMLANLVQETICSPRSLDMAICATARHKSK LVAEFRAVYRSFPDVFRSWDGYSLTRLAATDKRIVRQTLFLSSNYFHNLMLVHASESPEVPVNVRGTLEAAHDAI SAFFLFHSLLEPEARVWWVFNHRAFLEALCIGNVLREAAKEAGGIAVITRDPLFARARTDITRMMQIMELVGEDS DVARTRVKILREFLE |
| Coding | >Ophio5|7003 ATGCCCCAACTCGGTCAGCCTCTCGTTCGTCGTCGATTGCGCCTACCAATACAGTGTCTCCGTACTGTACGATTA TCTCGACGCTCTCTCGCGCCTCTCACCCTATCTGCTCTCCTCCGCCCTCCGCTCCAAGCTCGGTCCCCTCATCTG TTTATTCCCAGCGCCCGGCCATCTGTGTGGCTATCTGCTGTCCAGGCTGAGGCTGTCCGTACCCCGATGGAGCTG CATCGCGGTGGCCGCCACAACCACCATCATCATCATCAACATACCCTTCACCATACACAGCGTCGTCAGAACGAA CCATCGTCGACGCCCGCCTCCGCTGTCGCTACCGCCGTCGCTGCCGCAGAGGCCGAGTACGACGGCGCTGACAGT CCCCGCAAGAAGCAGAAACGCAACAAGCCGACGCTGTCGTGCCACGAGCTGGCCAGGCGTATCGCATCAGTCCTT CGGTTGACGACCTTGCGTATTAGTGCGACAGGGGACGGCCTCATTGCCTCGCTTCGCCAGACCGAGTGCCGCTAC GCCTACGTCGCAAACCTCCTCGAAGAGACGTCGAGATCCGCAGCCAACGGCCGGCGCATGACCAGGCCGCCCAAG AAAAAAGCCGCCGCCGAGAGGAGGCCGACGATCCCAAACATCGCCGACCGCGGCGCCATCGACGACCATGATGCC TCGTCCCGCGGCGCCGTTGCCCTCTCCATTGGCCTCCTCTCTCACGTCCCCTACTCGGGAACATCGGCTAGCAAC GTCTTCGGCATAGGCTCCGAGCACCCCTTTGCCAACTACTGGACCTGTGAGGGCGGCCTGCCCGAGGTCATCTCT GTCCTCCCCGAAAAGGCCCAGGCCGATGGCCTACTGGCCCGCTACTTCGAGTGTGTCGACCCCATCTACCCAATG ATCTATCGCCAGACCTTTTATGCCGAGTATGAGCACTTCTGGCAGCTGGCTTCGGGGCAGAGAGACGCGAGGGAC GCGAGGGACGAGACGGACGCCGCCTTTGTCGGTCTCGTCTTCGTCATGTTGGCCCTCGGCACCCAGTTCGTCACG ACGACGTCGGCCAAAGAGCGGAAGCAGACGGCCGAGTTTTACGCTTCGGCCAGCAATCAGGCCTTGCGCCTGTCG TCGTACCTGAGCACGGCATCGCTCTGCTCCATTCAGGCCATGGTCCTCATAACCTACTTTCTCATCAACGACAAC CACGCGTCCGACGGCTGGGCCTTTGCTGGCATCCTTATCCGGCAGGCATACGCCATGGGTCTACACCGTGATCCC AACATCGTGACTCCCAACGCCAGCCCCTTTGAGAAGCAGCAGAGGCGCAAGGTGTGGCAGGCCGTACTGCTGCAG GACACTTTCCTCACCGTGCTCCTGTCGCTGCCCCCCTCGGCGACGCACACGGACGTCTCGGTCGACGACCTGCTC GACAACAGCTCGTCCATCGCCAGCAGCGATCCCACCGACACGGCCTACATCCGAGGCTCGTGGATGCTGGCCAAC CTGGTACAGGAGACGATATGCTCACCGCGGTCGCTCGACATGGCCATCTGCGCCACGGCCCGCCACAAGTCGAAG CTCGTGGCCGAGTTCAGAGCCGTGTACCGCTCGTTCCCGGACGTGTTCCGGTCGTGGGACGGCTACAGTCTGACG AGGCTGGCCGCGACCGATAAGCGCATCGTACGACAGACGCTCTTCCTGTCGAGCAACTACTTCCATAACCTCATG TTGGTGCACGCCTCGGAGAGCCCCGAGGTGCCCGTCAATGTGCGGGGTACGCTGGAGGCGGCTCATGATGCCATC AGCGCCTTTTTCCTCTTTCACAGCCTGTTGGAGCCCGAGGCACGCGTCTGGTGGGTCTTTAACCACCGGGCCTTT CTCGAGGCGCTGTGTATCGGCAATGTGCTTCGTGAGGCGGCCAAGGAGGCGGGGGGCATAGCCGTCATCACCCGT GATCCTCTGTTCGCTCGGGCGAGGACCGACATCACGCGTATGATGCAGATCATGGAGCTTGTCGGAGAGGACTCG GACGTTGCTAGGACACGAGTCAAGATTCTACGCGAGTTCCTGGAA |
| Transcript | >Ophio5|7003 ATGCCCCAACTCGGTCAGCCTCTCGTTCGTCGTCGATTGCGCCTACCAATACAGTGTCTCCGTACTGTACGATTA TCTCGACGCTCTCTCGCGCCTCTCACCCTATCTGCTCTCCTCCGCCCTCCGCTCCAAGCTCGGTCCCCTCATCTG TTTATTCCCAGCGCCCGGCCATCTGTGTGGCTATCTGCTGTCCAGGCTGAGGCTGTCCGTACCCCGATGGAGCTG CATCGCGGTGGCCGCCACAACCACCATCATCATCATCAACATACCCTTCACCATACACAGCGTCGTCAGAACGAA CCATCGTCGACGCCCGCCTCCGCTGTCGCTACCGCCGTCGCTGCCGCAGAGGCCGAGTACGACGGCGCTGACAGT CCCCGCAAGAAGCAGAAACGCAACAAGCCGACGCTGTCGTGCCACGAGCTGGCCAGGCGTATCGCATCAGTCCTT CGGTTGACGACCTTGCGTATTAGTGCGACAGGGGACGGCCTCATTGCCTCGCTTCGCCAGACCGAGTGCCGCTAC GCCTACGTCGCAAACCTCCTCGAAGAGACGTCGAGATCCGCAGCCAACGGCCGGCGCATGACCAGGCCGCCCAAG AAAAAAGCCGCCGCCGAGAGGAGGCCGACGATCCCAAACATCGCCGACCGCGGCGCCATCGACGACCATGATGCC TCGTCCCGCGGCGCCGTTGCCCTCTCCATTGGCCTCCTCTCTCACGTCCCCTACTCGGGAACATCGGCTAGCAAC GTCTTCGGCATAGGCTCCGAGCACCCCTTTGCCAACTACTGGACCTGTGAGGGCGGCCTGCCCGAGGTCATCTCT GTCCTCCCCGAAAAGGCCCAGGCCGATGGCCTACTGGCCCGCTACTTCGAGTGTGTCGACCCCATCTACCCAATG ATCTATCGCCAGACCTTTTATGCCGAGTATGAGCACTTCTGGCAGCTGGCTTCGGGGCAGAGAGACGCGAGGGAC GCGAGGGACGAGACGGACGCCGCCTTTGTCGGTCTCGTCTTCGTCATGTTGGCCCTCGGCACCCAGTTCGTCACG ACGACGTCGGCCAAAGAGCGGAAGCAGACGGCCGAGTTTTACGCTTCGGCCAGCAATCAGGCCTTGCGCCTGTCG TCGTACCTGAGCACGGCATCGCTCTGCTCCATTCAGGCCATGGTCCTCATAACCTACTTTCTCATCAACGACAAC CACGCGTCCGACGGCTGGGCCTTTGCTGGCATCCTTATCCGGCAGGCATACGCCATGGGTCTACACCGTGATCCC AACATCGTGACTCCCAACGCCAGCCCCTTTGAGAAGCAGCAGAGGCGCAAGGTGTGGCAGGCCGTACTGCTGCAG GACACTTTCCTCACCGTGCTCCTGTCGCTGCCCCCCTCGGCGACGCACACGGACGTCTCGGTCGACGACCTGCTC GACAACAGCTCGTCCATCGCCAGCAGCGATCCCACCGACACGGCCTACATCCGAGGCTCGTGGATGCTGGCCAAC CTGGTACAGGAGACGATATGCTCACCGCGGTCGCTCGACATGGCCATCTGCGCCACGGCCCGCCACAAGTCGAAG CTCGTGGCCGAGTTCAGAGCCGTGTACCGCTCGTTCCCGGACGTGTTCCGGTCGTGGGACGGCTACAGTCTGACG AGGCTGGCCGCGACCGATAAGCGCATCGTACGACAGACGCTCTTCCTGTCGAGCAACTACTTCCATAACCTCATG TTGGTGCACGCCTCGGAGAGCCCCGAGGTGCCCGTCAATGTGCGGGGTACGCTGGAGGCGGCTCATGATGCCATC AGCGCCTTTTTCCTCTTTCACAGCCTGTTGGAGCCCGAGGCACGCGTCTGGTGGGTCTTTAACCACCGGGCCTTT CTCGAGGCGCTGTGTATCGGCAATGTGCTTCGTGAGGCGGCCAAGGAGGCGGGGGGCATAGCCGTCATCACCCGT GATCCTCTGTTCGCTCGGGCGAGGACCGACATCACGCGTATGATGCAGATCATGGAGCTTGTCGGAGAGGACTCG GACGTTGCTAGGACACGAGTCAAGATTCTACGCGAGTTCCTGGAATGA |
| Gene | >Ophio5|7003 ATGCCCCAACTCGGTCAGCCTCTCGTTCGTCGTCGATTGCGCCTACCAATACAGTGTCTCCGTACTGTACGATTA TCTCGACGCTCTCTCGCGCCTCTCACCCTATCTGCTCTCCTCCGCCCTCCGCTCCAAGCTCGGTCCCCTCATCTG TTTATTCCCAGCGCCCGGCCAGTGAGCCGACGGTCTTTCGTCTGAGACAGGCACTTATTCCCGGTTCAGTCTGTG TGGCTATCTGCTGTCCAGGCTGAGGCTGTCCGTACCCCGATGGAGCTGCATCGCGGTGGCCGCCACAACCACCAT CATCATCATCAACATACCCTTCACCATACACAGCGTCGTCAGAACGAACCATCGTCGACGCCCGCCTCCGCTGTC GCTACCGCCGTCGCTGCCGCAGAGGCCGAGTACGACGGCGCTGACAGTCCCCGCAAGAAGCAGAAACGCAACAAG CCGACGCTGTCGTGCCACGAGTGCGTCGAGAGGAAGACCAAGGTTGGTGTTTGACATGCTTGTTCCACCACAGGC TGGCCAGGCGTATCGCATCAGTCCTTCGGTTGACGACCTTGCGTATTAGTGCGACAGGGGACGGCCTCATTGCCT CGCTTGTAAGTCTTGCCGCCTCCTCTCGTCGCTTCTCCCGCTGACCAGAGCCTCTCACAGGCATTAAGCGCCAGA CCGAGTGCCGCTACGCCTACGTCGCAAACCTCCTCGAGTGAGTAGCGCCCCGAGTCGCCCTCTATCGAAAACCGG ACTCCTGGCGAGTTGACGCCGGAGCACAGAGAGACGTCGAGATCCGCAGCCAACGGCCGGCGCATGACCAGGCCG CCCAAGAAAAAAGCCGCCGCCGAGAGGAGGCCGACGATCCCAAACATCGCCGACCGCGGCGCCATCGACGACCAT GATGCCTCGTCCCGCGGCGCCGTTGCCCTCTCCATTGGCCTCCTCTCTCACGTCCCCTACTCGGGAACATCGGCT AGCAACGTCTTCGGCATAGGCTCCGAGCACCCCTTTGCCAACTACTGGACCTGTGAGGGCGGCCTGCCCGAGGTC ATCTCTGTCCTCCCCGAAAAGGCCCAGGCCGATGGCCTACTGGCCCGCTACTTCGAGTGTGTCGACCCCATCTAC CCAATGATCTATCGCCAGACCTTTTATGCCGAGTATGAGCACTTCTGGCAGCTGGCTTCGGGGCAGAGAGACGCG AGGGACGCGAGGGACGAGACGGACGCCGCCTTTGTCGGTCTCGTCTTCGTCATGTTGGCCCTCGGCACCCAGTTC GTCACGACGACGTCGGCCAAAGAGCGGAAGCAGACGGCCGAGTTTTACGCTTCGGCCAGCAATCAGGCCTTGCGC CTGTCGTCGTACCTGAGCACGGCATCGCTCTGCTCCATTCAGGCCATGGTCCTCATAACCTACTTTCTCATCAAC GACAACCACGCGTCCGACGGCTGGGCCTTTGCTGGCATCCTTATCCGGCAGGCATACGCCATGGGTCTACACCGT GATCCCAACATCGGTACGCTCCCTTTGTTCTCTCCTATGATCTTGGCCCCGGCTGACTGACGTCGGCTGGCGCGC CACTCAATCCAGTGACTCCCAACGCCAGCCCCTTTGAGAAGCAGCAGAGGCGCAAGGTGTGGCAGGCCGTACTGC TGCAGGACACTTTCCTCACCGTGCTCCTGTCGCTGCCCCCCTCGGCGACGCACACGGACGTCTCGGTCGACGACC TGCTCGACAACAGCTCGTCCATCGCCAGCAGCGATCCCACCGACACGGCCTACATCCGAGGCTCGTGGATGCTGG CCAACCTGGTACAGGAGACGATATGCTCACCGCGGTCGCTCGACATGGCCATCTGCGCCACGGCCCGCCACAAGT CGAAGCTCGTGGCCGAGTTCAGAGCCGTGTACCGCTCGTTCCCGGACGTGTTCCGGTCGTGGGACGGCTACAGTC TGACGAGGCTGGCCGCGACCGATAAGCGCATCGTACGACAGACGCTCTTCCTGTCGAGCAACTACTTCCATAACC TCATGTTGGTGCACGCCTCGGAGAGCCCCGAGGTGCCCGTCAATGTGCGGGGTACGCTGGAGGCGGCTCATGATG CCATCAGCGCCTTTTTCCTCTTTCACAGCCTGTTGGAGCCCGAGGCACGCGTCTGGTGGGTCTTTAACCACCGGG CCTTTCTCGAGGCGCTGTGTATCGGCAATGTGCTTCGTGAGGCGGCCAAGGAGGCGGGGGGCATAGCCGTCATCA CCCGTGATCCTCTGTTCGCTCGGGCGAGGACCGACATCAGTGAGTTCTCTTTCTCGCAGATGGGAAGAGGCTCGA CGGCAAGCGGTTTACTGATGGTTGCGGACGACGATAGCGCGTATGATGCAGATCATGGAGCTTGTCGGAGAGGAC TCGGACGTTGCTAGGACACGAGTCAAGATTCTACGCGAGTTCCTGGAATGA |