Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|7000
Gene name
Location	scaffold_643:2990..3818
Strand	-
Gene length (bp)	828
Transcript length (bp)	828
Coding sequence length (bp)	825
Protein length (aa)	275

Overview

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Cytoplasm		0.3726	0.297	0.0649	0.3008	0.2118	0.005	0.3394	0.2008	0.2832	0.0367

SignalP

(None)

Transmembrane Domains

Domain #	Start	End	Length
1	15	37	22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	27.23	11.13	43.32
CcL	In ants, during behavior modification	47.30	21.93	72.68
CcD	In ants, recently dead	19.06	7.18	30.94

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.047106	yes
SC16a	CcD	0.264666	no
CcL	CcD	0.002815	yes

Orthologs

Orthofinder run ID	4
Orthogroup	2565
Change Orthofinder run

Species	Protein ID
Ophiocordyceps australis 1348a (Ghana)	OphauG2\|619
Ophiocordyceps australis map64 (Brazil)	OphauB2\|4234
Ophiocordyceps camponoti-floridani	Ophcf2\|04201
Ophiocordyceps camponoti-rufipedis	Ophun1\|2448
Ophiocordyceps kimflemingae	Ophio5\|7000 (this protein)
Ophiocordyceps subramaniannii	Hirsu2\|3816

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|7000 MALINPVQTLFVPFLFVAMIPLAVFAGITTTLAFSVLGFRVIAVYLDIALSLMPQCFSSSESPPVVTASSSSPSS LGANHQQSRHRSLSPATSSSTHSVDNSPTTPTQQHLLHLHLHQAQSVPRRHRRRPSSLTSVVSAGSITPGGGMAM GLMPSVGPDRDFEGVGGWRDDRGGNDDTWTTINSRFELPDRVYARNHHRSPSGGAVTPGDTGVLMMKARARSPAP AEARITPSPNSSRARTPSASRMSVMNMGASDGYFSLTMSPTASKKPSMMM
Coding	>Ophio5\|7000 ATGGCTCTCATCAATCCCGTCCAGACGCTCTTCGTCCCCTTTCTCTTCGTTGCCATGATACCGCTCGCCGTCTTT GCCGGAATCACTACTACGCTCGCCTTCTCCGTCCTCGGCTTCCGCGTCATCGCCGTCTACCTGGACATTGCTCTG TCGCTCATGCCCCAGTGCTTCTCCAGCTCTGAATCGCCTCCCGTCGTCACCGCCTCCTCCTCTTCTCCCTCCTCG CTGGGCGCTAATCATCAGCAAAGTCGTCATCGGTCTCTCTCGCCAGCCACCAGCAGCAGCACTCACAGCGTTGAC AACAGCCCGACGACACCCACTCAACAACACCTCCTTCACCTTCACCTCCACCAAGCCCAGTCCGTGCCTCGCCGT CACCGTCGCCGGCCCAGCAGCCTCACCAGCGTCGTCTCCGCCGGTTCCATTACTCCCGGCGGGGGCATGGCCATG GGACTCATGCCCAGCGTCGGCCCGGATCGCGACTTCGAAGGCGTCGGTGGCTGGCGCGATGATCGCGGCGGCAAC GACGACACCTGGACCACCATCAACTCCCGCTTCGAGCTACCGGATCGCGTTTACGCCCGTAACCACCACCGCTCC CCGTCCGGCGGGGCCGTCACCCCGGGCGACACCGGCGTCCTCATGATGAAGGCACGCGCGCGTAGCCCGGCTCCG GCCGAGGCCAGGATCACGCCGTCTCCCAACAGCTCCCGCGCCAGGACGCCGTCGGCTTCCCGCATGAGCGTCATG AACATGGGCGCCAGCGACGGTTACTTTTCTCTTACCATGTCGCCCACGGCCAGTAAAAAGCCATCCATGATGATG
Transcript	>Ophio5\|7000 ATGGCTCTCATCAATCCCGTCCAGACGCTCTTCGTCCCCTTTCTCTTCGTTGCCATGATACCGCTCGCCGTCTTT GCCGGAATCACTACTACGCTCGCCTTCTCCGTCCTCGGCTTCCGCGTCATCGCCGTCTACCTGGACATTGCTCTG TCGCTCATGCCCCAGTGCTTCTCCAGCTCTGAATCGCCTCCCGTCGTCACCGCCTCCTCCTCTTCTCCCTCCTCG CTGGGCGCTAATCATCAGCAAAGTCGTCATCGGTCTCTCTCGCCAGCCACCAGCAGCAGCACTCACAGCGTTGAC AACAGCCCGACGACACCCACTCAACAACACCTCCTTCACCTTCACCTCCACCAAGCCCAGTCCGTGCCTCGCCGT CACCGTCGCCGGCCCAGCAGCCTCACCAGCGTCGTCTCCGCCGGTTCCATTACTCCCGGCGGGGGCATGGCCATG GGACTCATGCCCAGCGTCGGCCCGGATCGCGACTTCGAAGGCGTCGGTGGCTGGCGCGATGATCGCGGCGGCAAC GACGACACCTGGACCACCATCAACTCCCGCTTCGAGCTACCGGATCGCGTTTACGCCCGTAACCACCACCGCTCC CCGTCCGGCGGGGCCGTCACCCCGGGCGACACCGGCGTCCTCATGATGAAGGCACGCGCGCGTAGCCCGGCTCCG GCCGAGGCCAGGATCACGCCGTCTCCCAACAGCTCCCGCGCCAGGACGCCGTCGGCTTCCCGCATGAGCGTCATG AACATGGGCGCCAGCGACGGTTACTTTTCTCTTACCATGTCGCCCACGGCCAGTAAAAAGCCATCCATGATGATG TGA
Gene	>Ophio5\|7000 ATGGCTCTCATCAATCCCGTCCAGACGCTCTTCGTCCCCTTTCTCTTCGTTGCCATGATACCGCTCGCCGTCTTT GCCGGAATCACTACTACGCTCGCCTTCTCCGTCCTCGGCTTCCGCGTCATCGCCGTCTACCTGGACATTGCTCTG TCGCTCATGCCCCAGTGCTTCTCCAGCTCTGAATCGCCTCCCGTCGTCACCGCCTCCTCCTCTTCTCCCTCCTCG CTGGGCGCTAATCATCAGCAAAGTCGTCATCGGTCTCTCTCGCCAGCCACCAGCAGCAGCACTCACAGCGTTGAC AACAGCCCGACGACACCCACTCAACAACACCTCCTTCACCTTCACCTCCACCAAGCCCAGTCCGTGCCTCGCCGT CACCGTCGCCGGCCCAGCAGCCTCACCAGCGTCGTCTCCGCCGGTTCCATTACTCCCGGCGGGGGCATGGCCATG GGACTCATGCCCAGCGTCGGCCCGGATCGCGACTTCGAAGGCGTCGGTGGCTGGCGCGATGATCGCGGCGGCAAC GACGACACCTGGACCACCATCAACTCCCGCTTCGAGCTACCGGATCGCGTTTACGCCCGTAACCACCACCGCTCC CCGTCCGGCGGGGCCGTCACCCCGGGCGACACCGGCGTCCTCATGATGAAGGCACGCGCGCGTAGCCCGGCTCCG GCCGAGGCCAGGATCACGCCGTCTCCCAACAGCTCCCGCGCCAGGACGCCGTCGGCTTCCCGCATGAGCGTCATG AACATGGGCGCCAGCGACGGTTACTTTTCTCTTACCATGTCGCCCACGGCCAGTAAAAAGCCATCCATGATGATG TGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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