© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6979 |
| Gene name | |
| Location | scaffold_64:23090..24144 |
| Strand | + |
| Gene length (bp) | 1054 |
| Transcript length (bp) | 798 |
| Coding sequence length (bp) | 795 |
| Protein length (aa) | 265 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05875 | Ceramidase | Ceramidase | 6.0E-69 | 10 | 247 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38298|YPC1_YEAST | Alkaline ceramidase YPC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPC1 PE=1 SV=1 | 10 | 224 | 6.0E-22 |
| sp|Q9NUN7|ACER3_HUMAN | Alkaline ceramidase 3 OS=Homo sapiens GN=ACER3 PE=1 SV=3 | 2 | 224 | 3.0E-21 |
| sp|Q9D099|ACER3_MOUSE | Alkaline ceramidase 3 OS=Mus musculus GN=Acer3 PE=2 SV=1 | 2 | 224 | 5.0E-19 |
| sp|Q6TMJ1|DCD3A_DICDI | Putative alkaline ceramidase dcd3A OS=Dictyostelium discoideum GN=dcd3A PE=2 SV=1 | 11 | 222 | 3.0E-14 |
| sp|Q02896|YDC1_YEAST | Alkaline ceramidase YDC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDC1 PE=1 SV=1 | 10 | 224 | 3.0E-13 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38298|YPC1_YEAST | Alkaline ceramidase YPC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPC1 PE=1 SV=1 | 10 | 224 | 6.0E-22 |
| sp|Q9NUN7|ACER3_HUMAN | Alkaline ceramidase 3 OS=Homo sapiens GN=ACER3 PE=1 SV=3 | 2 | 224 | 3.0E-21 |
| sp|Q9D099|ACER3_MOUSE | Alkaline ceramidase 3 OS=Mus musculus GN=Acer3 PE=2 SV=1 | 2 | 224 | 5.0E-19 |
| sp|Q6TMJ1|DCD3A_DICDI | Putative alkaline ceramidase dcd3A OS=Dictyostelium discoideum GN=dcd3A PE=2 SV=1 | 11 | 222 | 3.0E-14 |
| sp|Q02896|YDC1_YEAST | Alkaline ceramidase YDC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDC1 PE=1 SV=1 | 10 | 224 | 3.0E-13 |
| sp|Q55DQ0|DCD3B_DICDI | Putative alkaline ceramidase dcd3B OS=Dictyostelium discoideum GN=dcd3B PE=3 SV=1 | 10 | 221 | 4.0E-12 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | Yes |
| GO:0006672 | ceramide metabolic process | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006665 | sphingolipid metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0005575 | cellular_component | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0006643 | membrane lipid metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 50 | 67 | 17 |
| 3 | 102 | 124 | 22 |
| 4 | 128 | 150 | 22 |
| 5 | 171 | 193 | 22 |
| 6 | 208 | 230 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 4.79 | 0.64 | 8.93 |
| CcL | In ants, during behavior modification | 3.61 | 0.00 | 7.63 |
| CcD | In ants, recently dead | 3.74 | 0.51 | 6.97 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.617045 | no |
| SC16a | CcD | 0.613472 | no |
| CcL | CcD | 0.952936 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6979 MANELSVVAQDYALTRYIAEFINTLSSLSYVAYGVYGLSSGSQKPQAGPRLASYCGLIGVGICSAGYHMTLKYHT QMLDELSMHLLATPILYRLLTLGASPYYTKVVGVTLLVLFTIVMTTHILLDEFLLHATTFGLAVYLIATRIWHII PQKVSDPLIRKKLQRMTSFGCANFLCGYFFWLVDEWACGLLTGLRHSLGFPMAFFLELHGWWHILTAIGGYMAVG IVDVLTSGEVDKDPIDDFAWPVPQAMQFLSGTAKVKSHSE |
| Coding | >Ophio5|6979 ATGGCTAATGAGCTGTCTGTCGTTGCACAGGATTATGCGCTTACGCGGTATATTGCCGAGTTCATCAACACTTTA AGCAGCCTTTCCTATGTCGCTTATGGAGTCTATGGCCTGTCAAGCGGCTCACAAAAGCCTCAAGCCGGACCACGC TTGGCCTCGTATTGTGGGCTGATAGGCGTGGGCATCTGCTCTGCTGGATATCACATGACGCTGAAATATCACACT CAGATGTTGGATGAATTATCCATGCACCTTCTGGCCACCCCCATTCTTTACCGTCTACTTACCTTGGGAGCCAGC CCTTACTACACCAAGGTGGTCGGTGTGACTCTCCTTGTACTCTTTACCATTGTCATGACCACCCACATCCTCTTG GACGAGTTTCTCCTTCACGCAACAACATTCGGCCTTGCCGTATACTTGATCGCCACCCGAATATGGCACATCATC CCGCAAAAAGTGTCTGATCCGCTCATCAGAAAGAAGCTGCAGAGGATGACGAGTTTCGGTTGCGCAAACTTTCTC TGCGGCTACTTCTTCTGGCTGGTTGACGAATGGGCCTGCGGCCTCTTGACTGGCCTGAGGCATTCACTCGGTTTT CCCATGGCCTTTTTCCTCGAACTCCATGGTTGGTGGCATATACTTACCGCCATTGGCGGCTACATGGCCGTTGGA ATCGTCGACGTGTTAACATCAGGAGAGGTTGACAAGGACCCGATTGACGACTTTGCCTGGCCGGTTCCTCAGGCC ATGCAGTTCCTGTCGGGCACAGCAAAAGTCAAGTCCCATAGTGAA |
| Transcript | >Ophio5|6979 ATGGCTAATGAGCTGTCTGTCGTTGCACAGGATTATGCGCTTACGCGGTATATTGCCGAGTTCATCAACACTTTA AGCAGCCTTTCCTATGTCGCTTATGGAGTCTATGGCCTGTCAAGCGGCTCACAAAAGCCTCAAGCCGGACCACGC TTGGCCTCGTATTGTGGGCTGATAGGCGTGGGCATCTGCTCTGCTGGATATCACATGACGCTGAAATATCACACT CAGATGTTGGATGAATTATCCATGCACCTTCTGGCCACCCCCATTCTTTACCGTCTACTTACCTTGGGAGCCAGC CCTTACTACACCAAGGTGGTCGGTGTGACTCTCCTTGTACTCTTTACCATTGTCATGACCACCCACATCCTCTTG GACGAGTTTCTCCTTCACGCAACAACATTCGGCCTTGCCGTATACTTGATCGCCACCCGAATATGGCACATCATC CCGCAAAAAGTGTCTGATCCGCTCATCAGAAAGAAGCTGCAGAGGATGACGAGTTTCGGTTGCGCAAACTTTCTC TGCGGCTACTTCTTCTGGCTGGTTGACGAATGGGCCTGCGGCCTCTTGACTGGCCTGAGGCATTCACTCGGTTTT CCCATGGCCTTTTTCCTCGAACTCCATGGTTGGTGGCATATACTTACCGCCATTGGCGGCTACATGGCCGTTGGA ATCGTCGACGTGTTAACATCAGGAGAGGTTGACAAGGACCCGATTGACGACTTTGCCTGGCCGGTTCCTCAGGCC ATGCAGTTCCTGTCGGGCACAGCAAAAGTCAAGTCCCATAGTGAATAG |
| Gene | >Ophio5|6979 ATGGCTAATGAGCTGTCTGTCGTTGCACAGGATTATGCGCTTACGCGGTATATTGCCGAGTTCATCAACACTTTA AGCAGCCTTTCCTATGGTCGGTAATCCCGTGTTTGCACAGGGTTCAACGTCTAACCTAACGCCCGGTACCAGTCG CTTATGGAGTCTATGGCCTGTCAAGCGGCTCACAAAAGCCTCAAGCCGGACCACGCTTGGCCTCGTATTGTGGGC TGATAGGCGTGGGCATCTGCTCTGCTGGATATCACATGACGCTGAAATATCACACTCAGATGTGTAGGTCCACGG CTCACTGATTTCCGACCACCTGTTGCTCTCCTGACTTATGCGATATGTAGTGGATGAATTATCCATGCACCTTCT GGCCACCCCCATTCTTTACCGTCTACTTACCTTGGGAGCCAGCCCTTACTACACCAAGGTGGTCGGTGTGACTCT CCTTGTACTCTTTACCATTGTCATGACCACCCACATCCTCTTGGACGAGTTTCTCCTTCACGCAACAACATTCGG CCTTGCCGTATACTTGATCGCCACCCGAATATGGCACATCATCCCGCAAAAAGTGTCTGATCCGCTCATCAGAAA GAAGCTGCAGAGGATGACGAGTTTCGGTTGCGGTGAGATTATTCCCTATTCCCGAATCCCCAACCACCCCTTTCC TTCCTGACCTTATCTGACCCTTGGGGGAATTTCAGCAAACTTTCTCTGCGGCTACTTCTTCTGGCTGGTTGACGA ATGGGCCTGCGGCCTCTTGACTGGCCTGAGGCATTCACTCGGTTTTCCCATGGCCTTTTTCCTCGAACTCCATGG TTGGTACGGACGAACCTTTGTGGCTGCCATCTTACCGCTCTGCACTAACAGTCTCCTCCGTAGGTGGCATATACT TACCGCCATTGGCGGCTACATGGCCGTTGGAATCGTCGACGTGTTAACATCAGGAGAGGTTGACAAGGACCCGAT TGACGACTTTGCCTGGCCGGTTCCTCAGGCCATGCAGTTCCTGTCGGGCACAGCAAAAGTCAAGTCCCATAGTGA ATAG |