Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6908
Gene name
Locationscaffold_63:20074..20419
Strand+
Gene length (bp)345
Transcript length (bp)225
Coding sequence length (bp)222
Protein length (aa) 74

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 8.36 0.00 20.26
CcL In ants, during behavior modification 54.77 31.39 78.16
CcD In ants, recently dead 0.00 0.00 0.00

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.015407 yes
SC16a CcD 0.000286 yes
CcL CcD 0.000286 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6908
MKTFATTILLLCVAGAMAADCRDGLWYCGHTLRRIGDYQSRIDQAFVGMGLDGTRDGFHDLFVCLGRGANDFCL
Coding >Ophio5|6908
ATGAAAACGTTCGCAACTACCATCCTTCTCCTCTGCGTCGCTGGCGCCATGGCTGCCGATTGTAGAGATGGCCTT
TGGTACTGTGGACATACGCTCCGCCGAATCGGCGACTATCAGTCTCGCATCGACCAAGCTTTCGTGGGTATGGGT
TTGGATGGTACTAGAGATGGTTTCCATGATTTGTTTGTGTGTCTCGGACGTGGCGCCAACGACTTCTGCCTT
Transcript >Ophio5|6908
ATGAAAACGTTCGCAACTACCATCCTTCTCCTCTGCGTCGCTGGCGCCATGGCTGCCGATTGTAGAGATGGCCTT
TGGTACTGTGGACATACGCTCCGCCGAATCGGCGACTATCAGTCTCGCATCGACCAAGCTTTCGTGGGTATGGGT
TTGGATGGTACTAGAGATGGTTTCCATGATTTGTTTGTGTGTCTCGGACGTGGCGCCAACGACTTCTGCCTTTGA
Gene >Ophio5|6908
ATGAAAACGTTCGCAACTACCATCCTTCTCCTCTGCGTCGCTGGCGCCATGGCTGCCGATTGTAGAGATGGCCTT
TGGTACTGTGGACATACGCTCCGCCGAATCGGTGAGCAAGCTGGCTAGTACTAAGCGTCGAGCTCGGAAACTAAA
GGCAACCCATTCATCTACCTAGGCGACTATCAGTCTCGCATCGACCAAGCTTTCGTGGGTATGGGTTTGGATGGT
ACTAGAGATGGTTTCCATGATTTGTTTGTGTGTCTCGGACGTGGCGCCGTGAGTCACCTCATGCCTTGTCCTAAA
GGCTGCTATAATTCCGGATCCCTACAGAACGACTTCTGCCTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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