Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6907
Gene name
Locationscaffold_63:13242..13982
Strand-
Gene length (bp)740
Transcript length (bp)678
Coding sequence length (bp)675
Protein length (aa) 225

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12708 Pectate_lyase_3 Pectate lyase superfamily protein 6.1E-52 56 209

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|D4B0V1|E13B_ARTBC Probable glucan endo-1,3-beta-glucosidase ARB_02077 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02077 PE=1 SV=1 34 211 1.0E-53
sp|P49426|EXG1_COCCA Glucan 1,3-beta-glucosidase OS=Cochliobolus carbonum GN=EXG1 PE=1 SV=1 33 201 5.0E-38
sp|P53626|E13B_TRIHA Glucan endo-1,3-beta-glucosidase BGN13.1 OS=Trichoderma harzianum GN=bgn13.1 PE=1 SV=1 42 217 9.0E-12

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6907
MALSILLTVFTLALGLVSPVQATVYRRQNSSCGWWMSRIEHRGSAPFAEDAEYRVFRNVLDFNATGDGKTDDTEA
INKAISFGGRCSAGCPSSTTTPALVYFPPGVYRVSDSIIQDYYTQFVGDAQAPPTIKADKGFRGTFVIDANPYQP
GGVLAWNPTDNFYRHIRNLIVDLTEVEGKTIHGIHWPVAQATSIQNVVFNMAPYKDDNTIQQVRHGRRKSAVHFA
Coding >Ophio5|6907
ATGGCGTTGTCCATCCTTCTGACGGTCTTTACCTTAGCCCTCGGGCTCGTCTCGCCCGTGCAGGCGACTGTCTAT
CGTCGACAAAATAGCTCTTGCGGCTGGTGGATGTCTAGGATCGAGCACCGGGGCTCGGCCCCCTTCGCCGAAGAC
GCAGAGTACCGGGTGTTCCGCAACGTTCTCGACTTCAACGCTACGGGCGACGGCAAGACGGACGACACAGAAGCA
ATCAACAAGGCCATCTCTTTCGGTGGCCGCTGCAGCGCTGGCTGCCCCTCGTCAACAACCACGCCGGCGCTCGTT
TACTTCCCGCCCGGCGTTTACCGCGTGTCAGACTCCATCATCCAAGACTATTACACGCAGTTTGTTGGCGATGCC
CAAGCTCCTCCAACAATCAAGGCCGATAAAGGCTTTCGAGGCACTTTTGTTATCGATGCCAACCCTTACCAGCCG
GGGGGCGTGCTGGCGTGGAATCCGACTGACAACTTCTATCGTCATATTCGAAACCTGATCGTCGACCTGACCGAG
GTTGAGGGCAAGACTATTCATGGAATTCACTGGCCCGTTGCGCAGGCGACGTCGATCCAGAACGTTGTCTTCAAC
ATGGCCCCTTACAAAGACGATAACACCATCCAGCAAGTTCGGCATGGGCGTCGGAAGTCAGCAGTTCACTTCGCG
Transcript >Ophio5|6907
ATGGCGTTGTCCATCCTTCTGACGGTCTTTACCTTAGCCCTCGGGCTCGTCTCGCCCGTGCAGGCGACTGTCTAT
CGTCGACAAAATAGCTCTTGCGGCTGGTGGATGTCTAGGATCGAGCACCGGGGCTCGGCCCCCTTCGCCGAAGAC
GCAGAGTACCGGGTGTTCCGCAACGTTCTCGACTTCAACGCTACGGGCGACGGCAAGACGGACGACACAGAAGCA
ATCAACAAGGCCATCTCTTTCGGTGGCCGCTGCAGCGCTGGCTGCCCCTCGTCAACAACCACGCCGGCGCTCGTT
TACTTCCCGCCCGGCGTTTACCGCGTGTCAGACTCCATCATCCAAGACTATTACACGCAGTTTGTTGGCGATGCC
CAAGCTCCTCCAACAATCAAGGCCGATAAAGGCTTTCGAGGCACTTTTGTTATCGATGCCAACCCTTACCAGCCG
GGGGGCGTGCTGGCGTGGAATCCGACTGACAACTTCTATCGTCATATTCGAAACCTGATCGTCGACCTGACCGAG
GTTGAGGGCAAGACTATTCATGGAATTCACTGGCCCGTTGCGCAGGCGACGTCGATCCAGAACGTTGTCTTCAAC
ATGGCCCCTTACAAAGACGATAACACCATCCAGCAAGTTCGGCATGGGCGTCGGAAGTCAGCAGTTCACTTCGCG
TAA
Gene >Ophio5|6907
ATGGCGTTGTCCATCCTTCTGACGGTCTTTACCTTAGCCCTCGGGCTCGTCTCGCCCGTGCAGGCGACTGTCTAT
CGTCGACAAAATAGCTCTTGCGGCTGGTGGATGTCTAGGATCGAGCACCGGGGCTCGGCCCCCTTCGCCGAAGAC
GCAGAGTACCGGGTGTTCCGCAACGTTCTCGACTTCAACGCTACGGGCGACGGCAAGACGGACGACACAGAAGCA
ATCAACAAGGCCATCTCTTTCGGTGGCCGCTGCAGCGCTGGCTGCCCCTCGTCAACAACCACGCCGGCGCTCGTT
TACTTCCCGCCCGGCGTTTACCGCGTGTCAGACTCCATCATCCAAGACTATTACACGCAGTTTGTTGGCGATGCC
CAAGCTCCTCCAACAATCAAGGCCGATAAAGGCTTTCGAGGCACTTTTGTTATCGATGCCAACCCTTACCAGCCG
GGGGGCGTGCTGGCGTGGAATCCGACTGACAACTTCTATCGTCATATTCGAAACCTGATCGTCGACCTGACCGAG
GTTGAGGGCAAGACTATTCATGGAATTCACTGGCCCGTTGCGCAGGCGACGTCGATCCAGAACGTTGTCTTCAAC
ATGGCCCCTTACAAAGACGATAACACCATCCAGCAAGGTCTCATAATCGAGGGAGGATCCGGAGGCTATATCTCT
GACCTTGTCTTCAACGGTGGCAAGTTCGGCATGGGCGTCGGAAGTCAGCAGTTCACTTCGCGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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