© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6893 |
| Gene name | |
| Location | scaffold_626:9080..10978 |
| Strand | - |
| Gene length (bp) | 1898 |
| Transcript length (bp) | 1764 |
| Coding sequence length (bp) | 1761 |
| Protein length (aa) | 587 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13639 | zf-RING_2 | Ring finger domain | 2.7E-07 | 47 | 75 |
| PF00628 | PHD | PHD-finger | 3.3E-08 | 126 | 169 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 7.2E-06 | 7 | 74 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94400|YQF7_SCHPO | PHD and RING finger domain-containing protein C126.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC126.07c PE=3 SV=1 | 5 | 169 | 2.0E-20 |
| sp|Q9P1Y6|PHRF1_HUMAN | PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV=3 | 46 | 169 | 5.0E-16 |
| sp|A6H619|PHRF1_MOUSE | PHD and RING finger domain-containing protein 1 OS=Mus musculus GN=Phrf1 PE=1 SV=2 | 46 | 168 | 3.0E-15 |
| sp|Q63625|PHRF1_RAT | PHD and RING finger domain-containing protein 1 OS=Rattus norvegicus GN=Phrf1 PE=1 SV=2 | 46 | 169 | 3.0E-14 |
| sp|C4QVX6|ATG35_PICPG | Autophagy-related protein 36 OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=ATG35 PE=1 SV=1 | 52 | 198 | 8.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94400|YQF7_SCHPO | PHD and RING finger domain-containing protein C126.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC126.07c PE=3 SV=1 | 5 | 169 | 2.0E-20 |
| sp|Q9P1Y6|PHRF1_HUMAN | PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV=3 | 46 | 169 | 5.0E-16 |
| sp|A6H619|PHRF1_MOUSE | PHD and RING finger domain-containing protein 1 OS=Mus musculus GN=Phrf1 PE=1 SV=2 | 46 | 168 | 3.0E-15 |
| sp|Q63625|PHRF1_RAT | PHD and RING finger domain-containing protein 1 OS=Rattus norvegicus GN=Phrf1 PE=1 SV=2 | 46 | 169 | 3.0E-14 |
| sp|C4QVX6|ATG35_PICPG | Autophagy-related protein 36 OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=ATG35 PE=1 SV=1 | 52 | 198 | 8.0E-10 |
| sp|Q63ZP1|PHF10_XENLA | PHD finger protein 10 OS=Xenopus laevis GN=phf10 PE=2 SV=2 | 126 | 193 | 2.0E-07 |
| sp|Q96T23|RSF1_HUMAN | Remodeling and spacing factor 1 OS=Homo sapiens GN=RSF1 PE=1 SV=2 | 117 | 170 | 2.0E-07 |
| sp|Q8UVR5|BAZ1A_XENLA | Bromodomain adjacent to zinc finger domain protein 1A (Fragment) OS=Xenopus laevis GN=baz1a PE=2 SV=1 | 126 | 168 | 3.0E-07 |
| sp|Q9SGH2|MBD9_ARATH | Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana GN=MBD9 PE=2 SV=1 | 126 | 169 | 4.0E-07 |
| sp|Q6NWE1|PHF10_DANRE | PHD finger protein 10 OS=Danio rerio GN=phf10 PE=2 SV=2 | 126 | 169 | 6.0E-07 |
| sp|Q9UIF8|BAZ2B_HUMAN | Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens GN=BAZ2B PE=1 SV=3 | 126 | 168 | 6.0E-07 |
| sp|Q9DE13|BAZ2B_CHICK | Bromodomain adjacent to zinc finger domain protein 2B OS=Gallus gallus GN=BAZ2B PE=2 SV=1 | 126 | 168 | 9.0E-07 |
| sp|Q9D8M7|PHF10_MOUSE | PHD finger protein 10 OS=Mus musculus GN=Phf10 PE=1 SV=4 | 126 | 168 | 1.0E-06 |
| sp|Q80Y84|KDM5B_MOUSE | Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 | 126 | 168 | 1.0E-06 |
| sp|Q9UGL1|KDM5B_HUMAN | Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3 | 126 | 168 | 1.0E-06 |
| sp|O74759|NTO1_SCHPO | Mst2 complex subunit nto1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nto1 PE=1 SV=1 | 126 | 168 | 1.0E-06 |
| sp|Q4V7A6|PHF10_RAT | PHD finger protein 10 OS=Rattus norvegicus GN=Phf10 PE=1 SV=2 | 126 | 168 | 1.0E-06 |
| sp|Q5F3R2|KDM5B_CHICK | Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1 | 126 | 214 | 1.0E-06 |
| sp|P55201|BRPF1_HUMAN | Peregrin OS=Homo sapiens GN=BRPF1 PE=1 SV=2 | 126 | 168 | 1.0E-06 |
| sp|Q8WUB8|PHF10_HUMAN | PHD finger protein 10 OS=Homo sapiens GN=PHF10 PE=1 SV=3 | 126 | 168 | 1.0E-06 |
| sp|Q2T9V9|PHF10_BOVIN | PHD finger protein 10 OS=Bos taurus GN=PHF10 PE=2 SV=1 | 126 | 168 | 1.0E-06 |
| sp|Q9NRL2|BAZ1A_HUMAN | Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens GN=BAZ1A PE=1 SV=2 | 126 | 168 | 1.0E-06 |
| sp|Q9VMJ7|KDM5_DROME | Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid PE=1 SV=1 | 126 | 169 | 2.0E-06 |
| sp|Q3UXZ9|KDM5A_MOUSE | Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2 | 126 | 214 | 2.0E-06 |
| sp|O88379|BAZ1A_MOUSE | Bromodomain adjacent to zinc finger domain protein 1A OS=Mus musculus GN=Baz1a PE=1 SV=3 | 126 | 168 | 2.0E-06 |
| sp|Q6IQX0|KD5BB_DANRE | Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2 | 126 | 214 | 3.0E-06 |
| sp|P29375|KDM5A_HUMAN | Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3 | 126 | 214 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6893 MSEPEQCIICLDPLPRPSSSSLNPASEPQPSVAPDVTDDAGHLDIVAALDGCEHIIHDACIRSWAQKTNTCPICR NPFHSVRVYNGVDGTVLSTYDVQDRKQVAEFDVQQWLSQNPDDDESPSNPCPICNSAEREDVLLLCDSCDAAYHT HCIGLDYVPQGDWYCMECAHVFELTDEPHAPADPTPAEPRLRNLRRPNPREIRGYHFSGRFFEMSDLDLDNHDDD EELEQYRRFQQQDLRELHRWQQRVNIAQRLGAREEFAEVIPPQISERLQPPPQPVVETRDERRAWGAFDRAREAD PVNGSNGPRKRRTRSVTASPAEPIPEPERKLKRPRTRRLPTQGEGSTSASSPAAAGPSAVRPTSRNGLGRVENET PLVSSLLRELEPNAPSEDETPALTLSLRPPPEASSPALSPSPSNHSSPRALSLTPPPLPRTNGREASPTMSLSTH IEPRYPPANYSPSRPTSDHSDSDTRPSGSEMRPLELRQPRPRRPRPVPPRSEDKSPTRPTMTQAEKKSINDIVKS ALRPHWRAQKLTTVQYEVINRAISRKLYDELRDVTSLDEESRRSWEKRATQEVARAVAELQA |
| Coding | >Ophio5|6893 ATGTCTGAGCCCGAGCAGTGCATCATATGCCTCGATCCCCTACCGCGCCCCTCGTCATCGTCTCTCAACCCTGCC TCAGAGCCCCAACCGTCCGTCGCCCCTGATGTGACCGACGACGCCGGCCATCTCGACATCGTAGCCGCCCTGGAC GGCTGCGAACACATCATTCACGATGCCTGCATTCGCTCTTGGGCACAGAAGACGAACACGTGCCCCATCTGCCGC AATCCGTTCCACTCCGTCCGGGTCTACAATGGCGTAGACGGCACTGTCCTATCCACCTACGACGTCCAAGACCGC AAGCAGGTCGCCGAGTTCGATGTCCAGCAATGGCTGTCTCAAAACCCCGATGACGATGAGAGTCCCAGCAATCCG TGCCCTATATGCAATTCGGCCGAGCGTGAGGATGTGCTGCTGCTCTGCGACAGCTGCGATGCCGCCTACCATACC CATTGCATCGGGCTCGATTACGTCCCGCAGGGCGACTGGTACTGCATGGAATGTGCCCACGTCTTCGAGCTCACC GACGAGCCACATGCCCCGGCCGACCCTACCCCTGCCGAGCCCCGGCTGCGAAACCTCCGGCGGCCGAATCCGAGA GAGATTCGCGGTTACCACTTTTCCGGCCGCTTCTTCGAGATGAGCGATTTGGACCTCGACAACCACGATGACGAC GAGGAACTCGAGCAATACCGTCGATTTCAGCAGCAAGACTTGCGAGAGCTGCACCGCTGGCAGCAGCGCGTCAAC ATCGCCCAGCGCCTCGGTGCCCGCGAGGAGTTCGCCGAGGTCATACCGCCGCAGATCAGCGAGCGCCTCCAGCCG CCGCCTCAGCCCGTCGTGGAGACGAGAGACGAGAGGCGTGCCTGGGGCGCCTTTGACCGCGCCCGGGAAGCCGAT CCCGTCAACGGCAGCAACGGGCCTCGGAAGCGGAGAACCCGCTCCGTCACTGCTTCGCCGGCGGAGCCCATCCCG GAACCCGAGAGGAAGCTGAAGCGTCCGCGGACTCGGCGGCTCCCCACTCAGGGCGAGGGTTCCACCTCGGCCTCG TCTCCAGCCGCGGCCGGGCCGTCGGCGGTGCGACCGACGAGTCGCAACGGGCTCGGCCGGGTCGAGAACGAGACG CCGCTGGTGTCGTCGCTGCTCAGGGAACTGGAACCAAACGCCCCGTCAGAGGACGAGACGCCCGCGCTGACATTG AGCCTGCGTCCGCCGCCCGAGGCCTCCTCTCCGGCCCTCTCTCCCTCCCCTTCGAACCACAGCAGTCCGCGCGCG CTCTCTCTCACCCCTCCGCCTCTGCCGCGCACCAACGGTAGGGAGGCCTCTCCGACCATGTCACTGAGCACGCAC ATCGAGCCGAGGTATCCGCCCGCCAACTACTCACCCAGTCGACCCACGAGCGACCACAGCGACTCCGACACACGG CCCAGCGGGAGCGAGATGCGTCCCTTGGAGCTGCGTCAGCCGCGGCCTCGGCGGCCTCGTCCGGTACCGCCACGG TCCGAGGACAAGTCGCCCACCCGGCCGACCATGACGCAAGCGGAGAAGAAGAGTATCAACGACATCGTCAAGAGC GCCCTGAGGCCGCATTGGCGAGCCCAGAAGCTGACGACGGTGCAATACGAGGTAATTAATCGGGCCATTTCTCGA AAGCTTTACGACGAACTGCGGGACGTGACTTCGCTTGACGAAGAATCTCGGCGATCATGGGAGAAGAGGGCCACG CAGGAGGTTGCCCGAGCCGTCGCCGAGCTGCAGGCC |
| Transcript | >Ophio5|6893 ATGTCTGAGCCCGAGCAGTGCATCATATGCCTCGATCCCCTACCGCGCCCCTCGTCATCGTCTCTCAACCCTGCC TCAGAGCCCCAACCGTCCGTCGCCCCTGATGTGACCGACGACGCCGGCCATCTCGACATCGTAGCCGCCCTGGAC GGCTGCGAACACATCATTCACGATGCCTGCATTCGCTCTTGGGCACAGAAGACGAACACGTGCCCCATCTGCCGC AATCCGTTCCACTCCGTCCGGGTCTACAATGGCGTAGACGGCACTGTCCTATCCACCTACGACGTCCAAGACCGC AAGCAGGTCGCCGAGTTCGATGTCCAGCAATGGCTGTCTCAAAACCCCGATGACGATGAGAGTCCCAGCAATCCG TGCCCTATATGCAATTCGGCCGAGCGTGAGGATGTGCTGCTGCTCTGCGACAGCTGCGATGCCGCCTACCATACC CATTGCATCGGGCTCGATTACGTCCCGCAGGGCGACTGGTACTGCATGGAATGTGCCCACGTCTTCGAGCTCACC GACGAGCCACATGCCCCGGCCGACCCTACCCCTGCCGAGCCCCGGCTGCGAAACCTCCGGCGGCCGAATCCGAGA GAGATTCGCGGTTACCACTTTTCCGGCCGCTTCTTCGAGATGAGCGATTTGGACCTCGACAACCACGATGACGAC GAGGAACTCGAGCAATACCGTCGATTTCAGCAGCAAGACTTGCGAGAGCTGCACCGCTGGCAGCAGCGCGTCAAC ATCGCCCAGCGCCTCGGTGCCCGCGAGGAGTTCGCCGAGGTCATACCGCCGCAGATCAGCGAGCGCCTCCAGCCG CCGCCTCAGCCCGTCGTGGAGACGAGAGACGAGAGGCGTGCCTGGGGCGCCTTTGACCGCGCCCGGGAAGCCGAT CCCGTCAACGGCAGCAACGGGCCTCGGAAGCGGAGAACCCGCTCCGTCACTGCTTCGCCGGCGGAGCCCATCCCG GAACCCGAGAGGAAGCTGAAGCGTCCGCGGACTCGGCGGCTCCCCACTCAGGGCGAGGGTTCCACCTCGGCCTCG TCTCCAGCCGCGGCCGGGCCGTCGGCGGTGCGACCGACGAGTCGCAACGGGCTCGGCCGGGTCGAGAACGAGACG CCGCTGGTGTCGTCGCTGCTCAGGGAACTGGAACCAAACGCCCCGTCAGAGGACGAGACGCCCGCGCTGACATTG AGCCTGCGTCCGCCGCCCGAGGCCTCCTCTCCGGCCCTCTCTCCCTCCCCTTCGAACCACAGCAGTCCGCGCGCG CTCTCTCTCACCCCTCCGCCTCTGCCGCGCACCAACGGTAGGGAGGCCTCTCCGACCATGTCACTGAGCACGCAC ATCGAGCCGAGGTATCCGCCCGCCAACTACTCACCCAGTCGACCCACGAGCGACCACAGCGACTCCGACACACGG CCCAGCGGGAGCGAGATGCGTCCCTTGGAGCTGCGTCAGCCGCGGCCTCGGCGGCCTCGTCCGGTACCGCCACGG TCCGAGGACAAGTCGCCCACCCGGCCGACCATGACGCAAGCGGAGAAGAAGAGTATCAACGACATCGTCAAGAGC GCCCTGAGGCCGCATTGGCGAGCCCAGAAGCTGACGACGGTGCAATACGAGGTAATTAATCGGGCCATTTCTCGA AAGCTTTACGACGAACTGCGGGACGTGACTTCGCTTGACGAAGAATCTCGGCGATCATGGGAGAAGAGGGCCACG CAGGAGGTTGCCCGAGCCGTCGCCGAGCTGCAGGCCTGA |
| Gene | >Ophio5|6893 ATGTCTGAGCCCGAGCAGTGCATCATATGCCTCGATCCCCTACCGCGCCCCTCGTCATCGTCTCTCAACCCTGCC TCAGAGCCCCAACCGTCCGTCGCCCCTGATGTGACCGACGACGCCGGCCATCTCGACATCGTAGCCGCCCTGGAC GGCTGCGAACACATCATTCACGATGCCTGCATTCGCTCTTGGGCACAGAAGACGAACACGTGCCCCATCTGCCGC AATCCGTTCCACTCCGTCCGGGTCTACAATGGCGTAGACGGTAGGCAACCTCCTGCTGTCCGCGTGCCACTGCTG CCTCGGCCGACTGACCCAATCCAGGCACTGTCCTATCCACCTACGACGTCCAAGACCGCAAGCAGGTCGCCGAGT TCGATGTCCAGCAATGGCTGTCTCAAAACCCCGATGACGATGAGAGTCCCAGCAATCCGTGCCCTATATGCAATT CGGCCGAGCGTGAGGATGTGCTGCTGCTCTGCGACAGCTGCGATGCCGCCTACCATACCCATTGCATCGGGCTCG ATTACGTCCCGCAGGGCGACTGGTACTGCATGGAATGTGCCCACGTCTTCGAGCTCACCGACGAGCCACATGCCC CGGCCGACCCTACCCCTGCCGAGCCCCGGCTGCGAAACCTCCGGCGGCCGAATCCGAGAGAGATTCGCGGTTACC ACGTTCGTACCAGGGCTCGCCTCAGAAGGGCACGTCGTCAGGCACGAAATGCTGAGTGGCAGGGCGCCTGGGGCC AGTTTTCCGGCCGCTTCTTCGAGATGAGCGATTTGGACCTCGACAACCACGATGACGACGAGGAACTCGAGCAAT ACCGTCGATTTCAGCAGCAAGACTTGCGAGAGCTGCACCGCTGGCAGCAGCGCGTCAACATCGCCCAGCGCCTCG GTGCCCGCGAGGAGTTCGCCGAGGTCATACCGCCGCAGATCAGCGAGCGCCTCCAGCCGCCGCCTCAGCCCGTCG TGGAGACGAGAGACGAGAGGCGTGCCTGGGGCGCCTTTGACCGCGCCCGGGAAGCCGATCCCGTCAACGGCAGCA ACGGGCCTCGGAAGCGGAGAACCCGCTCCGTCACTGCTTCGCCGGCGGAGCCCATCCCGGAACCCGAGAGGAAGC TGAAGCGTCCGCGGACTCGGCGGCTCCCCACTCAGGGCGAGGGTTCCACCTCGGCCTCGTCTCCAGCCGCGGCCG GGCCGTCGGCGGTGCGACCGACGAGTCGCAACGGGCTCGGCCGGGTCGAGAACGAGACGCCGCTGGTGTCGTCGC TGCTCAGGGAACTGGAACCAAACGCCCCGTCAGAGGACGAGACGCCCGCGCTGACATTGAGCCTGCGTCCGCCGC CCGAGGCCTCCTCTCCGGCCCTCTCTCCCTCCCCTTCGAACCACAGCAGTCCGCGCGCGCTCTCTCTCACCCCTC CGCCTCTGCCGCGCACCAACGGTAGGGAGGCCTCTCCGACCATGTCACTGAGCACGCACATCGAGCCGAGGTATC CGCCCGCCAACTACTCACCCAGTCGACCCACGAGCGACCACAGCGACTCCGACACACGGCCCAGCGGGAGCGAGA TGCGTCCCTTGGAGCTGCGTCAGCCGCGGCCTCGGCGGCCTCGTCCGGTACCGCCACGGTCCGAGGACAAGTCGC CCACCCGGCCGACCATGACGCAAGCGGAGAAGAAGAGTATCAACGACATCGTCAAGAGCGCCCTGAGGCCGCATT GGCGAGCCCAGAAGCTGACGACGGTGCAATACGAGGTAATTAATCGGGCCATTTCTCGAAAGCTTTACGACGAAC TGCGGGACGTGACTTCGCTTGACGAAGAATCTCGGCGATCATGGGAGAAGAGGGCCACGCAGGAGGTTGCCCGAG CCGTCGCCGAGCTGCAGGCCTGA |