Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|6868
Gene name
Location	scaffold_621:3241..4684
Strand	+
Gene length (bp)	1443
Transcript length (bp)	1326
Coding sequence length (bp)	1323
Protein length (aa)	441

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04666	Glyco_transf_54	N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region	2.3E-09	81	232

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q812F8\|MGT4B_MOUSE	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B OS=Mus musculus GN=Mgat4b PE=2 SV=1	84	233	1.0E-07
sp\|Q9UQ53\|MGT4B_HUMAN	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B OS=Homo sapiens GN=MGAT4B PE=1 SV=1	84	233	1.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 21	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	7	24	17
2	247	266	19
3	279	301	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	43.27	22.72	63.82
CcL	In ants, during behavior modification	13.64	5.19	22.09
CcD	In ants, recently dead	9.76	3.53	16.00

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.000286	yes
CcL	CcD	0.309064	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|6868 MRLWRLNAVFWLLWLSLVTWFFFNGYDDPSSVFYDARRAYRAPFSNLRVREVEAFLRRAAKRPMPNRTTTTTTMT KTTGRPPLLCVGIPSISRQSEAFVGHAVGSLLDTLSPLERDLIFLVVLLADGDPSMHSAYRQDWLRRLPDEVLVY GDDGVAANSSANFRRLPARGPAERVEKMRLDHAALVETCRARNAPYFALVEDDVVASRDWFVRLRRALSHLESSG RDWIYLRLFYSEFLMGWNAEEWLGYSQVIAAAYGLLILLLLELRRRHRLGSSPGCVFVLALCLWMPAMIGLVFMV GRVSLRRLGPSPPEGVREMPNYGCCAQGLVFPRRHLQGLHDLLASPPFAFAGDQILEDYARDRGLARFALRDSVS HPGASSAEETTNQLPERTTQRFSAGQAVEQLQSIKRCIAPPAHDNRREAYMFHLRFRQFYGLETGG
Coding	>Ophio5\|6868 ATGCGTCTCTGGCGCCTCAACGCCGTCTTCTGGCTCCTCTGGCTGTCTCTCGTCACCTGGTTCTTCTTCAACGGC TACGATGATCCTTCCTCCGTCTTCTACGATGCCCGCCGCGCCTACCGCGCGCCCTTCTCGAACCTACGTGTCCGA GAAGTCGAGGCCTTTCTGAGGCGCGCTGCCAAGAGGCCGATGCCGAACAGGACGACGACGACGACGACGATGACA AAGACGACGGGGCGGCCGCCGCTGCTGTGCGTCGGCATCCCCAGCATCAGTCGTCAGTCTGAGGCTTTTGTCGGT CATGCGGTGGGCAGTTTACTCGATACACTTTCTCCCCTTGAGCGGGACCTCATCTTTCTTGTCGTTCTGCTTGCC GATGGCGATCCGTCTATGCACTCTGCCTATCGACAGGATTGGCTTCGTCGTCTGCCGGATGAGGTTCTCGTCTAT GGTGACGATGGTGTGGCTGCTAACTCGTCGGCTAACTTTCGTCGTCTTCCTGCTCGTGGTCCGGCTGAGCGGGTC GAGAAGATGAGGCTTGATCATGCTGCGCTCGTGGAGACGTGTCGTGCTCGCAACGCACCGTACTTTGCTCTCGTC GAAGATGACGTTGTCGCTTCCCGAGACTGGTTCGTCCGTCTGCGTCGCGCGTTGAGCCACCTTGAGAGCTCAGGC CGAGACTGGATCTACCTTCGTCTCTTCTACTCGGAGTTCCTGATGGGTTGGAATGCCGAGGAGTGGCTCGGCTAC AGTCAGGTCATTGCCGCCGCCTATGGGCTGCTCATCCTGCTGCTTCTCGAGCTACGACGTCGGCACAGGCTCGGT TCCAGCCCGGGCTGCGTCTTCGTCCTGGCCCTCTGCCTCTGGATGCCGGCCATGATCGGGCTCGTCTTCATGGTC GGACGCGTCTCCCTGCGTCGGTTGGGGCCCTCGCCGCCCGAGGGGGTGCGCGAGATGCCGAATTACGGATGCTGC GCTCAGGGGCTCGTCTTCCCCCGTCGTCATCTGCAAGGCCTGCACGACCTGTTGGCCAGCCCGCCTTTTGCCTTT GCCGGGGACCAGATTCTCGAGGATTATGCTCGTGATAGGGGCTTGGCTAGGTTTGCGCTCCGAGACAGTGTCTCA CACCCGGGCGCTTCTTCTGCTGAGGAGACAACCAACCAACTGCCCGAGAGAACAACCCAGCGCTTTTCAGCAGGA CAGGCCGTCGAGCAGTTGCAGAGCATCAAACGTTGCATTGCGCCGCCCGCTCACGACAACAGACGAGAGGCTTAC ATGTTTCATCTACGCTTCCGCCAGTTTTATGGCCTCGAAACCGGCGGA
Transcript	>Ophio5\|6868 ATGCGTCTCTGGCGCCTCAACGCCGTCTTCTGGCTCCTCTGGCTGTCTCTCGTCACCTGGTTCTTCTTCAACGGC TACGATGATCCTTCCTCCGTCTTCTACGATGCCCGCCGCGCCTACCGCGCGCCCTTCTCGAACCTACGTGTCCGA GAAGTCGAGGCCTTTCTGAGGCGCGCTGCCAAGAGGCCGATGCCGAACAGGACGACGACGACGACGACGATGACA AAGACGACGGGGCGGCCGCCGCTGCTGTGCGTCGGCATCCCCAGCATCAGTCGTCAGTCTGAGGCTTTTGTCGGT CATGCGGTGGGCAGTTTACTCGATACACTTTCTCCCCTTGAGCGGGACCTCATCTTTCTTGTCGTTCTGCTTGCC GATGGCGATCCGTCTATGCACTCTGCCTATCGACAGGATTGGCTTCGTCGTCTGCCGGATGAGGTTCTCGTCTAT GGTGACGATGGTGTGGCTGCTAACTCGTCGGCTAACTTTCGTCGTCTTCCTGCTCGTGGTCCGGCTGAGCGGGTC GAGAAGATGAGGCTTGATCATGCTGCGCTCGTGGAGACGTGTCGTGCTCGCAACGCACCGTACTTTGCTCTCGTC GAAGATGACGTTGTCGCTTCCCGAGACTGGTTCGTCCGTCTGCGTCGCGCGTTGAGCCACCTTGAGAGCTCAGGC CGAGACTGGATCTACCTTCGTCTCTTCTACTCGGAGTTCCTGATGGGTTGGAATGCCGAGGAGTGGCTCGGCTAC AGTCAGGTCATTGCCGCCGCCTATGGGCTGCTCATCCTGCTGCTTCTCGAGCTACGACGTCGGCACAGGCTCGGT TCCAGCCCGGGCTGCGTCTTCGTCCTGGCCCTCTGCCTCTGGATGCCGGCCATGATCGGGCTCGTCTTCATGGTC GGACGCGTCTCCCTGCGTCGGTTGGGGCCCTCGCCGCCCGAGGGGGTGCGCGAGATGCCGAATTACGGATGCTGC GCTCAGGGGCTCGTCTTCCCCCGTCGTCATCTGCAAGGCCTGCACGACCTGTTGGCCAGCCCGCCTTTTGCCTTT GCCGGGGACCAGATTCTCGAGGATTATGCTCGTGATAGGGGCTTGGCTAGGTTTGCGCTCCGAGACAGTGTCTCA CACCCGGGCGCTTCTTCTGCTGAGGAGACAACCAACCAACTGCCCGAGAGAACAACCCAGCGCTTTTCAGCAGGA CAGGCCGTCGAGCAGTTGCAGAGCATCAAACGTTGCATTGCGCCGCCCGCTCACGACAACAGACGAGAGGCTTAC ATGTTTCATCTACGCTTCCGCCAGTTTTATGGCCTCGAAACCGGCGGATAA
Gene	>Ophio5\|6868 ATGCGTCTCTGGCGCCTCAACGCCGTCTTCTGGCTCCTCTGGCTGTCTCTCGTCACCTGGTTCTTCTTCAACGGC TACGATGATCCTTCCTCCGTCTTCTACGATGCCCGCCGCGCCTACCGCGCGCCCTTCTCGAACCTACGTGTCCGA GAAGTCGAGGCCTTTCTGAGGCGCGCTGCCAAGAGGCCGATGCCGAACAGGACGACGACGACGACGACGATGACA AAGACGACGGGGCGGCCGCCGCTGCTGTGCGTCGGCATCCCCAGCATCAGTCGTCAGTCTGAGGCTTTTGTCGGT CATGCGGTGGGCAGTTTACTCGATACACTTTCTCCCCTTGAGCGGGACCTCATCTTTCTTGTCGTTCTGCTTGCC GATGGCGATCCGTCTATGCACTCTGCCTATCGACAGGATTGGCTTCGTCGTCTGCCGGATGAGGTTCTCGTCTAT GGTGACGATGGTGTGGCTGCTAACTCGTCGGCTAACTTTCGTCGTCTTCCTGCTCGTGGTCCGGCTGAGCGGGTC GAGAAGATGAGGCTTGATCATGCTGCGCTCGTGGAGACGTGTCGTGCTCGCAACGCACCGTACTTTGCTCTCGTC GAAGATGACGTTGTCGCTTCCCGAGACTGGTTCGTCCGTCTGCGTCGCGCGTTGAGCCACCTTGAGAGCTCAGGC CGAGACTGGATCTACCTTCGTCTCTTCTACTCGGAGTTCCTGATGGGTTGGAATGCCGAGGAGTGGCTCGGCTAC AGTCAGGTCATTGCCGCCGCCTATGGGCTGCTCATCCTGCTGCTTCTCGAGCTACGACGTCGGCACAGGCTCGGT TCCAGCCCGGGCTGCGTCTTCGTCCTGGCCCTCTGCCTCTGGATGCCGGCCATGATCGGGCTCGTCTTCATGGTC GGACGCGTCTCCCTGCGTCGGTTGGGGCCCTCGCCGCCCGAGGGGGTGCGCGAGATGCCGAATTACGGATGCTGC GCTCAGGGGCTCGTCTTCCCCCGTCGTCATCTGCAAGGCCTGCACGACCTGTTGGCCAGCCCGCCTTTTGCCTTT GCCGGGGACCAGATTCTCGAGGATTATGCTCGTGATAGGGGCTTGGCTAGGTGGGCGCTTGAACCCAGTGTCTTG CAGCATGCTGGTCGGAGGCAGTCGTCGGATGGGCCGCGGACTGCAAACGTGTGGAACTTTAGCTTTGAGCGGCTG CAGCGGTCATGATCAAGGTTTGCGCTCCGAGACAGTGTCTCACACCCGGGCGCTTCTTCTGCTGAGGAGACAACC AACCAACTGCCCGAGAGAACAACCCAGCGCTTTTCAGCAGGACAGGCCGTCGAGCAGTTGCAGAGCATCAAACGT TGCATTGCGCCGCCCGCTCACGACAACAGACGAGAGGCTTACATGTTTCATCTACGCTTCCGCCAGTTTTATGGC CTCGAAACCGGCGGATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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