Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6868
Gene name
Locationscaffold_621:3241..4684
Strand+
Gene length (bp)1443
Transcript length (bp)1326
Coding sequence length (bp)1323
Protein length (aa) 441

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04666 Glyco_transf_54 N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region 2.3E-09 81 232

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q812F8|MGT4B_MOUSE Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B OS=Mus musculus GN=Mgat4b PE=2 SV=1 84 233 1.0E-07
sp|Q9UQ53|MGT4B_HUMAN Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B OS=Homo sapiens GN=MGAT4B PE=1 SV=1 84 233 1.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

Domain # Start End Length
1 7 24 17
2 247 266 19
3 279 301 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6868
MRLWRLNAVFWLLWLSLVTWFFFNGYDDPSSVFYDARRAYRAPFSNLRVREVEAFLRRAAKRPMPNRTTTTTTMT
KTTGRPPLLCVGIPSISRQSEAFVGHAVGSLLDTLSPLERDLIFLVVLLADGDPSMHSAYRQDWLRRLPDEVLVY
GDDGVAANSSANFRRLPARGPAERVEKMRLDHAALVETCRARNAPYFALVEDDVVASRDWFVRLRRALSHLESSG
RDWIYLRLFYSEFLMGWNAEEWLGYSQVIAAAYGLLILLLLELRRRHRLGSSPGCVFVLALCLWMPAMIGLVFMV
GRVSLRRLGPSPPEGVREMPNYGCCAQGLVFPRRHLQGLHDLLASPPFAFAGDQILEDYARDRGLARFALRDSVS
HPGASSAEETTNQLPERTTQRFSAGQAVEQLQSIKRCIAPPAHDNRREAYMFHLRFRQFYGLETGG
Coding >Ophio5|6868
ATGCGTCTCTGGCGCCTCAACGCCGTCTTCTGGCTCCTCTGGCTGTCTCTCGTCACCTGGTTCTTCTTCAACGGC
TACGATGATCCTTCCTCCGTCTTCTACGATGCCCGCCGCGCCTACCGCGCGCCCTTCTCGAACCTACGTGTCCGA
GAAGTCGAGGCCTTTCTGAGGCGCGCTGCCAAGAGGCCGATGCCGAACAGGACGACGACGACGACGACGATGACA
AAGACGACGGGGCGGCCGCCGCTGCTGTGCGTCGGCATCCCCAGCATCAGTCGTCAGTCTGAGGCTTTTGTCGGT
CATGCGGTGGGCAGTTTACTCGATACACTTTCTCCCCTTGAGCGGGACCTCATCTTTCTTGTCGTTCTGCTTGCC
GATGGCGATCCGTCTATGCACTCTGCCTATCGACAGGATTGGCTTCGTCGTCTGCCGGATGAGGTTCTCGTCTAT
GGTGACGATGGTGTGGCTGCTAACTCGTCGGCTAACTTTCGTCGTCTTCCTGCTCGTGGTCCGGCTGAGCGGGTC
GAGAAGATGAGGCTTGATCATGCTGCGCTCGTGGAGACGTGTCGTGCTCGCAACGCACCGTACTTTGCTCTCGTC
GAAGATGACGTTGTCGCTTCCCGAGACTGGTTCGTCCGTCTGCGTCGCGCGTTGAGCCACCTTGAGAGCTCAGGC
CGAGACTGGATCTACCTTCGTCTCTTCTACTCGGAGTTCCTGATGGGTTGGAATGCCGAGGAGTGGCTCGGCTAC
AGTCAGGTCATTGCCGCCGCCTATGGGCTGCTCATCCTGCTGCTTCTCGAGCTACGACGTCGGCACAGGCTCGGT
TCCAGCCCGGGCTGCGTCTTCGTCCTGGCCCTCTGCCTCTGGATGCCGGCCATGATCGGGCTCGTCTTCATGGTC
GGACGCGTCTCCCTGCGTCGGTTGGGGCCCTCGCCGCCCGAGGGGGTGCGCGAGATGCCGAATTACGGATGCTGC
GCTCAGGGGCTCGTCTTCCCCCGTCGTCATCTGCAAGGCCTGCACGACCTGTTGGCCAGCCCGCCTTTTGCCTTT
GCCGGGGACCAGATTCTCGAGGATTATGCTCGTGATAGGGGCTTGGCTAGGTTTGCGCTCCGAGACAGTGTCTCA
CACCCGGGCGCTTCTTCTGCTGAGGAGACAACCAACCAACTGCCCGAGAGAACAACCCAGCGCTTTTCAGCAGGA
CAGGCCGTCGAGCAGTTGCAGAGCATCAAACGTTGCATTGCGCCGCCCGCTCACGACAACAGACGAGAGGCTTAC
ATGTTTCATCTACGCTTCCGCCAGTTTTATGGCCTCGAAACCGGCGGA
Transcript >Ophio5|6868
ATGCGTCTCTGGCGCCTCAACGCCGTCTTCTGGCTCCTCTGGCTGTCTCTCGTCACCTGGTTCTTCTTCAACGGC
TACGATGATCCTTCCTCCGTCTTCTACGATGCCCGCCGCGCCTACCGCGCGCCCTTCTCGAACCTACGTGTCCGA
GAAGTCGAGGCCTTTCTGAGGCGCGCTGCCAAGAGGCCGATGCCGAACAGGACGACGACGACGACGACGATGACA
AAGACGACGGGGCGGCCGCCGCTGCTGTGCGTCGGCATCCCCAGCATCAGTCGTCAGTCTGAGGCTTTTGTCGGT
CATGCGGTGGGCAGTTTACTCGATACACTTTCTCCCCTTGAGCGGGACCTCATCTTTCTTGTCGTTCTGCTTGCC
GATGGCGATCCGTCTATGCACTCTGCCTATCGACAGGATTGGCTTCGTCGTCTGCCGGATGAGGTTCTCGTCTAT
GGTGACGATGGTGTGGCTGCTAACTCGTCGGCTAACTTTCGTCGTCTTCCTGCTCGTGGTCCGGCTGAGCGGGTC
GAGAAGATGAGGCTTGATCATGCTGCGCTCGTGGAGACGTGTCGTGCTCGCAACGCACCGTACTTTGCTCTCGTC
GAAGATGACGTTGTCGCTTCCCGAGACTGGTTCGTCCGTCTGCGTCGCGCGTTGAGCCACCTTGAGAGCTCAGGC
CGAGACTGGATCTACCTTCGTCTCTTCTACTCGGAGTTCCTGATGGGTTGGAATGCCGAGGAGTGGCTCGGCTAC
AGTCAGGTCATTGCCGCCGCCTATGGGCTGCTCATCCTGCTGCTTCTCGAGCTACGACGTCGGCACAGGCTCGGT
TCCAGCCCGGGCTGCGTCTTCGTCCTGGCCCTCTGCCTCTGGATGCCGGCCATGATCGGGCTCGTCTTCATGGTC
GGACGCGTCTCCCTGCGTCGGTTGGGGCCCTCGCCGCCCGAGGGGGTGCGCGAGATGCCGAATTACGGATGCTGC
GCTCAGGGGCTCGTCTTCCCCCGTCGTCATCTGCAAGGCCTGCACGACCTGTTGGCCAGCCCGCCTTTTGCCTTT
GCCGGGGACCAGATTCTCGAGGATTATGCTCGTGATAGGGGCTTGGCTAGGTTTGCGCTCCGAGACAGTGTCTCA
CACCCGGGCGCTTCTTCTGCTGAGGAGACAACCAACCAACTGCCCGAGAGAACAACCCAGCGCTTTTCAGCAGGA
CAGGCCGTCGAGCAGTTGCAGAGCATCAAACGTTGCATTGCGCCGCCCGCTCACGACAACAGACGAGAGGCTTAC
ATGTTTCATCTACGCTTCCGCCAGTTTTATGGCCTCGAAACCGGCGGATAA
Gene >Ophio5|6868
ATGCGTCTCTGGCGCCTCAACGCCGTCTTCTGGCTCCTCTGGCTGTCTCTCGTCACCTGGTTCTTCTTCAACGGC
TACGATGATCCTTCCTCCGTCTTCTACGATGCCCGCCGCGCCTACCGCGCGCCCTTCTCGAACCTACGTGTCCGA
GAAGTCGAGGCCTTTCTGAGGCGCGCTGCCAAGAGGCCGATGCCGAACAGGACGACGACGACGACGACGATGACA
AAGACGACGGGGCGGCCGCCGCTGCTGTGCGTCGGCATCCCCAGCATCAGTCGTCAGTCTGAGGCTTTTGTCGGT
CATGCGGTGGGCAGTTTACTCGATACACTTTCTCCCCTTGAGCGGGACCTCATCTTTCTTGTCGTTCTGCTTGCC
GATGGCGATCCGTCTATGCACTCTGCCTATCGACAGGATTGGCTTCGTCGTCTGCCGGATGAGGTTCTCGTCTAT
GGTGACGATGGTGTGGCTGCTAACTCGTCGGCTAACTTTCGTCGTCTTCCTGCTCGTGGTCCGGCTGAGCGGGTC
GAGAAGATGAGGCTTGATCATGCTGCGCTCGTGGAGACGTGTCGTGCTCGCAACGCACCGTACTTTGCTCTCGTC
GAAGATGACGTTGTCGCTTCCCGAGACTGGTTCGTCCGTCTGCGTCGCGCGTTGAGCCACCTTGAGAGCTCAGGC
CGAGACTGGATCTACCTTCGTCTCTTCTACTCGGAGTTCCTGATGGGTTGGAATGCCGAGGAGTGGCTCGGCTAC
AGTCAGGTCATTGCCGCCGCCTATGGGCTGCTCATCCTGCTGCTTCTCGAGCTACGACGTCGGCACAGGCTCGGT
TCCAGCCCGGGCTGCGTCTTCGTCCTGGCCCTCTGCCTCTGGATGCCGGCCATGATCGGGCTCGTCTTCATGGTC
GGACGCGTCTCCCTGCGTCGGTTGGGGCCCTCGCCGCCCGAGGGGGTGCGCGAGATGCCGAATTACGGATGCTGC
GCTCAGGGGCTCGTCTTCCCCCGTCGTCATCTGCAAGGCCTGCACGACCTGTTGGCCAGCCCGCCTTTTGCCTTT
GCCGGGGACCAGATTCTCGAGGATTATGCTCGTGATAGGGGCTTGGCTAGGTGGGCGCTTGAACCCAGTGTCTTG
CAGCATGCTGGTCGGAGGCAGTCGTCGGATGGGCCGCGGACTGCAAACGTGTGGAACTTTAGCTTTGAGCGGCTG
CAGCGGTCATGATCAAGGTTTGCGCTCCGAGACAGTGTCTCACACCCGGGCGCTTCTTCTGCTGAGGAGACAACC
AACCAACTGCCCGAGAGAACAACCCAGCGCTTTTCAGCAGGACAGGCCGTCGAGCAGTTGCAGAGCATCAAACGT
TGCATTGCGCCGCCCGCTCACGACAACAGACGAGAGGCTTACATGTTTCATCTACGCTTCCGCCAGTTTTATGGC
CTCGAAACCGGCGGATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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