Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6859
Gene name
Locationscaffold_62:45780..46451
Strand-
Gene length (bp)671
Transcript length (bp)462
Coding sequence length (bp)459
Protein length (aa) 153

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 16 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.0 0.0 0.0
CcL In ants, during behavior modification 0.0 0.0 0.0
CcD In ants, recently dead 0.0 0.0 0.0

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6859
MKLLAALVLASVAMAAKPSYGDGGEGGGKMMCKPEGAECAVGLGPGKSSGCCAGLTCKSTRGVLGGGRCTSNGGG
GSGGDGGAYKKDDKDDKGDAYKKDDKDDKGDAYKKDDKDDKDDNGGDKDESGPELPHRLPGEWMLPRPHLRVGWN
VSR
Coding >Ophio5|6859
ATGAAGCTTCTCGCCGCTCTCGTTCTCGCCAGTGTAGCTATGGCTGCCAAACCATCTTACGGCGACGGTGGTGAA
GGAGGCGGCAAGATGATGTGCAAGCCTGAGGGTGCAGAGTGCGCCGTCGGTCTTGGACCAGGGAAGTCGTCGGGA
TGCTGCGCCGGCTTAACCTGCAAATCTACCCGCGGGGTATTGGGCGGCGGAAGGTGCACTTCGAATGGAGGTGGT
GGTAGTGGCGGAGACGGCGGTGCTTACAAAAAGGACGACAAGGACGACAAGGGCGATGCCTACAAAAAGGACGAC
AAGGACGATAAGGGCGATGCCTACAAAAAGGACGACAAGGACGACAAGGACGACAACGGCGGCGATAAAGACGAA
AGTGGGCCAGAGCTGCCGCATCGGCTCCCCGGAGAGTGGATGCTGCCCCGGCCTCATCTGCGAGTCGGATGGAAT
GTCTCCAGG
Transcript >Ophio5|6859
ATGAAGCTTCTCGCCGCTCTCGTTCTCGCCAGTGTAGCTATGGCTGCCAAACCATCTTACGGCGACGGTGGTGAA
GGAGGCGGCAAGATGATGTGCAAGCCTGAGGGTGCAGAGTGCGCCGTCGGTCTTGGACCAGGGAAGTCGTCGGGA
TGCTGCGCCGGCTTAACCTGCAAATCTACCCGCGGGGTATTGGGCGGCGGAAGGTGCACTTCGAATGGAGGTGGT
GGTAGTGGCGGAGACGGCGGTGCTTACAAAAAGGACGACAAGGACGACAAGGGCGATGCCTACAAAAAGGACGAC
AAGGACGATAAGGGCGATGCCTACAAAAAGGACGACAAGGACGACAAGGACGACAACGGCGGCGATAAAGACGAA
AGTGGGCCAGAGCTGCCGCATCGGCTCCCCGGAGAGTGGATGCTGCCCCGGCCTCATCTGCGAGTCGGATGGAAT
GTCTCCAGGTAG
Gene >Ophio5|6859
ATGAAGCTTCTCGCCGCTCTCGTTCTCGCCAGTGTAGCTATGGCTGCCAAACCATCTTACGGCGACGGTGGTGAA
GGAGGCGGCAAGATGGTAAGGCTCAGACTTCTTTCAGGCTCCTCTTTATAAAGGGCACTGCTAATGCAAATCGGG
TTACCATAGATGTGCAAGCCTGAGGGTGCAGAGTGCGCCGTCGGTCTTGGACCAGGGAAGTCGTCGGGATGCTGC
GCCGGCTTAACCTGCAAATCTACCCGCGGGGTATTGGGCGGCGGAAGGGTGAGTCCCAGAACGTAGACGCGCCTT
TCTCAACGGCAGACGAGCTGATGGGATGGACTTCCAGTGCACTTCGAATGGAGGTGGTGGTAGTGGCGGAGACGG
CGGTGCTTACAAAAAGGACGACAAGGACGACAAGGGCGATGCCTACAAAAAGGACGACAAGGACGATAAGGGCGA
TGCCTACAAAAAGGACGACAAGGACGACAAGGACGACAACGGCGGCGATAAAGACGTACGCAACTCTCCAAAATC
TTCACTCTATCCCCGTCATGGACAGCCTATGCTAACCTTCGACCTCAGGGGTGCAGGAAAGTGGGCCAGAGCTGC
CGCATCGGCTCCCCGGAGAGTGGATGCTGCCCCGGCCTCATCTGCGAGTCGGATGGAATGTCTCCAGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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