Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6843
Gene name
Locationscaffold_62:15443..16695
Strand-
Gene length (bp)1252
Transcript length (bp)1149
Coding sequence length (bp)1146
Protein length (aa) 382

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10501 Ribosomal_L50 Ribosomal subunit 39S 2.3E-13 241 334

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005739 mitochondrion Yes
GO:0110165 cellular anatomical entity No
GO:0043227 membrane-bounded organelle No
GO:0005575 cellular_component No
GO:0043229 intracellular organelle No
GO:0043231 intracellular membrane-bounded organelle No
GO:0043226 organelle No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 26 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6843
MPRLPGTRSLKLLSLAASSPQSATATPLTATCALTTTSSARSEATEWVRKKLWKGKPPGPKDPYAPRPALLADSV
ESAPTTTIELPPRRDRTPRPIKLSRLTVPPKRTEAATEAQAVEADPNYVPAEDGKGLEHIETLDTWWQRPGHWGE
ESQFKGFGGSTLVTDSGLIEASLRRAFVEVIALQQTGHFAEWMAKPWRMGGLKELRLILDTRLDTTGELRQVTNA
SAISQHVRNQAEPAEKQAAQTSEKEAKAAIQRWGNSWKKSQLSDEIKFAMRKRLYQLTGNLISDAKLGAASTIQH
LLTVVAKAPKPKRLATELRERGDLLKLANVKVHSRRVGLITKETAVGRWKVIRKELSKRGIPARGPIEVSSLIEK
QWLSGKV
Coding >Ophio5|6843
ATGCCTCGGCTTCCCGGGACGAGGAGCTTGAAACTCTTGAGCTTGGCAGCCTCGTCCCCTCAGTCGGCGACGGCG
ACGCCCTTGACGGCGACTTGCGCTCTGACGACGACGAGCTCGGCGCGAAGCGAAGCGACGGAGTGGGTACGAAAG
AAGCTCTGGAAAGGAAAGCCTCCCGGCCCCAAGGATCCGTATGCTCCTCGGCCAGCGTTGCTGGCCGATTCCGTC
GAGTCGGCCCCAACGACTACGATAGAGCTGCCACCACGGCGGGATCGAACGCCGCGGCCGATCAAGCTATCGCGC
CTCACTGTGCCGCCAAAGCGGACCGAAGCGGCCACCGAGGCGCAGGCCGTGGAGGCGGACCCCAACTACGTACCG
GCCGAGGACGGCAAGGGCCTGGAGCACATCGAGACGCTTGATACCTGGTGGCAACGGCCGGGCCACTGGGGCGAG
GAGAGCCAGTTCAAGGGCTTCGGTGGCAGTACCCTCGTCACTGACAGCGGCCTTATCGAGGCTTCACTGCGCAGG
GCCTTTGTCGAGGTCATTGCCCTGCAGCAGACGGGCCACTTTGCCGAGTGGATGGCCAAGCCTTGGAGGATGGGC
GGCTTGAAGGAACTCCGTCTGATACTCGATACCAGGCTTGATACCACAGGCGAATTACGGCAAGTCACTAATGCT
AGCGCCATCTCACAGCACGTCCGGAACCAGGCCGAGCCGGCCGAGAAACAAGCAGCCCAGACTTCGGAGAAGGAG
GCCAAGGCCGCCATCCAGCGATGGGGAAACTCATGGAAGAAATCTCAGCTTAGCGACGAAATCAAGTTTGCGATG
CGGAAGCGTCTCTACCAACTCACGGGCAACCTCATATCCGACGCCAAGCTAGGAGCCGCCAGCACGATCCAGCAT
CTGCTTACAGTCGTCGCCAAAGCGCCGAAACCGAAACGGCTGGCGACGGAGCTTCGCGAACGCGGAGATCTGCTG
AAGCTAGCCAATGTGAAGGTGCACAGCCGCAGGGTCGGGCTCATCACCAAGGAGACTGCCGTCGGCCGCTGGAAG
GTGATTCGCAAGGAGCTCAGCAAGCGCGGTATTCCTGCAAGAGGGCCGATTGAAGTTTCGAGCCTCATCGAGAAG
CAGTGGCTTTCGGGTAAGGTG
Transcript >Ophio5|6843
ATGCCTCGGCTTCCCGGGACGAGGAGCTTGAAACTCTTGAGCTTGGCAGCCTCGTCCCCTCAGTCGGCGACGGCG
ACGCCCTTGACGGCGACTTGCGCTCTGACGACGACGAGCTCGGCGCGAAGCGAAGCGACGGAGTGGGTACGAAAG
AAGCTCTGGAAAGGAAAGCCTCCCGGCCCCAAGGATCCGTATGCTCCTCGGCCAGCGTTGCTGGCCGATTCCGTC
GAGTCGGCCCCAACGACTACGATAGAGCTGCCACCACGGCGGGATCGAACGCCGCGGCCGATCAAGCTATCGCGC
CTCACTGTGCCGCCAAAGCGGACCGAAGCGGCCACCGAGGCGCAGGCCGTGGAGGCGGACCCCAACTACGTACCG
GCCGAGGACGGCAAGGGCCTGGAGCACATCGAGACGCTTGATACCTGGTGGCAACGGCCGGGCCACTGGGGCGAG
GAGAGCCAGTTCAAGGGCTTCGGTGGCAGTACCCTCGTCACTGACAGCGGCCTTATCGAGGCTTCACTGCGCAGG
GCCTTTGTCGAGGTCATTGCCCTGCAGCAGACGGGCCACTTTGCCGAGTGGATGGCCAAGCCTTGGAGGATGGGC
GGCTTGAAGGAACTCCGTCTGATACTCGATACCAGGCTTGATACCACAGGCGAATTACGGCAAGTCACTAATGCT
AGCGCCATCTCACAGCACGTCCGGAACCAGGCCGAGCCGGCCGAGAAACAAGCAGCCCAGACTTCGGAGAAGGAG
GCCAAGGCCGCCATCCAGCGATGGGGAAACTCATGGAAGAAATCTCAGCTTAGCGACGAAATCAAGTTTGCGATG
CGGAAGCGTCTCTACCAACTCACGGGCAACCTCATATCCGACGCCAAGCTAGGAGCCGCCAGCACGATCCAGCAT
CTGCTTACAGTCGTCGCCAAAGCGCCGAAACCGAAACGGCTGGCGACGGAGCTTCGCGAACGCGGAGATCTGCTG
AAGCTAGCCAATGTGAAGGTGCACAGCCGCAGGGTCGGGCTCATCACCAAGGAGACTGCCGTCGGCCGCTGGAAG
GTGATTCGCAAGGAGCTCAGCAAGCGCGGTATTCCTGCAAGAGGGCCGATTGAAGTTTCGAGCCTCATCGAGAAG
CAGTGGCTTTCGGGTAAGGTGTAG
Gene >Ophio5|6843
ATGCCTCGGCTTCCCGGGACGAGGAGCTTGAAACTCTTGAGCTTGGCAGCCTCGTCCCCTCAGTCGGCGACGGCG
ACGCCCTTGACGGCGACTTGCGCTCTGACGACGACGAGCTCGGCGCGAAGCGAAGCGACGGAGTGGGTACGAAAG
AAGCTCTGGAAAGGAAAGCCTCCCGGCCCCAAGGATCCGTATGCTCCTCGGCCAGCGTTGCTGGCCGATTCCGTC
GAGTCGGCCCCAACGACTACGATAGAGCTGCCACCACGGCGGGATCGAACGCCGCGGCCGATCAAGCTATCGCGC
CTCACTGTGCCGCCAAAGCGGACCGAAGCGGCCACCGAGGCGCAGGCCGTGGAGGCGGACCCCAACTACGTACCG
GCCGAGGACGGCAAGGGCCTGGAGCACATCGAGACGCTTGATACCTGGTGGCAACGGCCGGGCCACTGGGGCGAG
GAGAGCCAGTTCAAGGGCTTCGGTGGCAGTACCCTCGTCACTGACAGCGGCCTTATCGAGGCTTCACTGCGCAGG
GCCTTTGTCGAGGTCATTGCCCTGCAGCAGACGGGCCACTTTGCCGAGTGGATGGCCAAGCCTTGGAGGATGGGC
GGCTTGAAGGAACTCCGTCTGATACTCGATACCAGGCTTGATACCACAGGCGAATTACGGCAAGTCACTAATGCT
AGCGCCATCTCACAGCACGTCCGGAACCAGGCCGAGCCGGCCGAGAAACAAGCAGCCCAGACTTCGGAGAAGGAG
GCCAAGGCCGCCATCCAGCGATGGGGAAACTCATGGAAGAAATCTCAGCTTAGCGACGAAATCAAGTTTGCGGTA
CGTGCCCCTCCCCCCCCCCCCCTCCCTCTTGTTCGCCTCTGAACTCTGTTGGGGGTTGGTCCACGAAGCTGACAT
ACACCAACACACAAAAAAAAAAAAGATGCGGAAGCGTCTCTACCAACTCACGGGCAACCTCATATCCGACGCCAA
GCTAGGAGCCGCCAGCACGATCCAGCATCTGCTTACAGTCGTCGCCAAAGCGCCGAAACCGAAACGGCTGGCGAC
GGAGCTTCGCGAACGCGGAGATCTGCTGAAGCTAGCCAATGTGAAGGTGCACAGCCGCAGGGTCGGGCTCATCAC
CAAGGAGACTGCCGTCGGCCGCTGGAAGGTGATTCGCAAGGAGCTCAGCAAGCGCGGTATTCCTGCAAGAGGGCC
GATTGAAGTTTCGAGCCTCATCGAGAAGCAGTGGCTTTCGGGTAAGGTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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