© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|6837 |
| Gene name | |
| Location | scaffold_62:7930..8979 |
| Strand | - |
| Gene length (bp) | 1049 |
| Transcript length (bp) | 993 |
| Coding sequence length (bp) | 993 |
| Protein length (aa) | 331 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 44 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 184 | 206 | 22 |
| 2 | 251 | 273 | 22 |
| 3 | 285 | 307 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 23.00 | 9.79 | 36.21 |
| CcL | In ants, during behavior modification | 7.58 | 1.89 | 13.28 |
| CcD | In ants, recently dead | 4.81 | 1.04 | 8.57 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.001851 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.258560 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6837 METAKDNTAAEDIMADAGQTEETSSTLRRRQESKTTPRNQRGLAIPVTQSLTPSPAFSAVSRRSAAAAPMSPTSA PEDFWRLLPVGQNSRRNSSVATTDRQRVRRAPSWMASTPSESAAQAARESPLTPFPPLRTASGAELGEATVEEPG ASTHEALPTSSQQDLVADRPNRHQWSLNTAMHGVVLFGQCLVTLAVLSGFLYCAVVDIGSEKLKNSGMPWKYAEP SLGLILATCGGVLALHETRVLSTVAVLYLQALILVMTMGTSLALWIWILTHTTSQIVKGAVVSGVTMLMGTAMIA FFRAALIWWIIEDHGELGGSGFSDEEIGEN* |
| Coding | >Ophio5|6837 ATGGAGACGGCCAAGGACAACACTGCGGCTGAAGATATCATGGCCGACGCGGGTCAGACCGAGGAGACGAGCTCG ACGCTTCGCCGTCGACAGGAGAGTAAGACCACGCCACGCAATCAGCGTGGATTAGCTATCCCCGTGACGCAGTCG TTGACGCCCTCACCTGCTTTTTCAGCCGTCTCAAGGCGATCGGCTGCTGCGGCGCCCATGTCGCCCACGTCCGCT CCTGAAGACTTCTGGCGTCTGCTCCCTGTCGGCCAGAACTCGCGGCGGAACTCGAGTGTGGCGACGACGGATAGG CAGCGCGTCAGACGGGCTCCGAGCTGGATGGCGTCAACGCCGTCCGAGTCGGCTGCTCAGGCGGCTAGAGAGTCG CCGCTGACTCCATTTCCACCCTTGCGGACTGCGTCTGGTGCAGAGCTGGGGGAAGCAACTGTTGAAGAGCCGGGG GCATCGACGCATGAAGCATTGCCGACTTCGTCTCAGCAGGATCTGGTCGCGGACCGACCCAATCGTCACCAATGG AGCCTCAATACTGCCATGCACGGCGTCGTCCTGTTTGGGCAGTGCCTTGTCACGCTTGCCGTCTTGAGCGGCTTT CTCTACTGCGCTGTCGTGGACATTGGCAGCGAGAAGCTCAAGAATTCGGGCATGCCATGGAAATACGCAGAGCCG TCTCTGGGCCTCATCCTCGCCACTTGTGGCGGCGTGCTCGCCCTGCACGAGACGCGCGTGCTGTCGACCGTCGCG GTGCTGTACCTGCAGGCGCTGATCCTCGTCATGACCATGGGCACCTCGCTCGCCCTGTGGATCTGGATTTTGACC CACACCACCAGCCAGATTGTCAAGGGAGCCGTCGTCAGCGGCGTGACTATGCTCATGGGAACGGCCATGATTGCC TTCTTCAGAGCGGCCTTGATCTGGTGGATTATCGAGGATCACGGCGAGCTGGGCGGCAGTGGCTTTTCGGATGAG GAAATTGGTGAGAATTAA |
| Transcript | >Ophio5|6837 ATGGAGACGGCCAAGGACAACACTGCGGCTGAAGATATCATGGCCGACGCGGGTCAGACCGAGGAGACGAGCTCG ACGCTTCGCCGTCGACAGGAGAGTAAGACCACGCCACGCAATCAGCGTGGATTAGCTATCCCCGTGACGCAGTCG TTGACGCCCTCACCTGCTTTTTCAGCCGTCTCAAGGCGATCGGCTGCTGCGGCGCCCATGTCGCCCACGTCCGCT CCTGAAGACTTCTGGCGTCTGCTCCCTGTCGGCCAGAACTCGCGGCGGAACTCGAGTGTGGCGACGACGGATAGG CAGCGCGTCAGACGGGCTCCGAGCTGGATGGCGTCAACGCCGTCCGAGTCGGCTGCTCAGGCGGCTAGAGAGTCG CCGCTGACTCCATTTCCACCCTTGCGGACTGCGTCTGGTGCAGAGCTGGGGGAAGCAACTGTTGAAGAGCCGGGG GCATCGACGCATGAAGCATTGCCGACTTCGTCTCAGCAGGATCTGGTCGCGGACCGACCCAATCGTCACCAATGG AGCCTCAATACTGCCATGCACGGCGTCGTCCTGTTTGGGCAGTGCCTTGTCACGCTTGCCGTCTTGAGCGGCTTT CTCTACTGCGCTGTCGTGGACATTGGCAGCGAGAAGCTCAAGAATTCGGGCATGCCATGGAAATACGCAGAGCCG TCTCTGGGCCTCATCCTCGCCACTTGTGGCGGCGTGCTCGCCCTGCACGAGACGCGCGTGCTGTCGACCGTCGCG GTGCTGTACCTGCAGGCGCTGATCCTCGTCATGACCATGGGCACCTCGCTCGCCCTGTGGATCTGGATTTTGACC CACACCACCAGCCAGATTGTCAAGGGAGCCGTCGTCAGCGGCGTGACTATGCTCATGGGAACGGCCATGATTGCC TTCTTCAGAGCGGCCTTGATCTGGTGGATTATCGAGGATCACGGCGAGCTGGGCGGCAGTGGCTTTTCGGATGAG GAAATTGGTGAGAATTAA |
| Gene | >Ophio5|6837 ATGGAGACGGCCAAGGACAACACTGCGGCTGAAGATATCATGGCCGACGCGGGTCAGACCGAGGAGACGAGCTCG ACGCTTCGCCGTCGACAGGAGAGTAAGACCACGCCACGCAATCAGCGTGGATTAGCTATCCCCGTGACGCAGTCG TTGACGCCCTCACCTGCTTTTTCAGCCGTCTCAAGGCGATCGGCTGCTGCGGCGCCCATGTCGCCCACGTCCGCT CCTGAAGACTTCTGGCGTCTGCTCCCTGTCGGCCAGAACTCGCGGCGGAACTCGAGTGTGGCGACGACGGATAGG CAGCGCGTCAGACGGGCTCCGAGCTGGATGGCGTCAACGCCGTCCGAGTCGGCTGCTCAGGCGGCTAGAGAGTCG CCGCTGACTCCATTTCCACCCTTGCGGACTGCGTCTGGTGCAGAGCTGGGGGAAGCAACTGTTGAAGAGCCGGGG GCATCGACGCATGAAGCATTGCCGACTTCGTCTCAGCAGGATCTGGTCGCGGACCGACCCAATCGTCACCAATGG AGCCTCAATACTGCCATGCACGGCGTCGTCCTGTTTGGGCAGTGCCTTGTCACGCTTGCCGTCTTGAGCGGCTTT CTCTACTGCGCTGTCGTGGACATTGGCAGCGAGAAGCTCAAGAATTCGGGCATGTCAGTATACCACTACTCCTCT CGCCATACACTCTGGTTGCTAACTACTTGTACAGGCCATGGAAATACGCAGAGCCGTCTCTGGGCCTCATCCTCG CCACTTGTGGCGGCGTGCTCGCCCTGCACGAGACGCGCGTGCTGTCGACCGTCGCGGTGCTGTACCTGCAGGCGC TGATCCTCGTCATGACCATGGGCACCTCGCTCGCCCTGTGGATCTGGATTTTGACCCACACCACCAGCCAGATTG TCAAGGGAGCCGTCGTCAGCGGCGTGACTATGCTCATGGGAACGGCCATGATTGCCTTCTTCAGAGCGGCCTTGA TCTGGTGGATTATCGAGGATCACGGCGAGCTGGGCGGCAGTGGCTTTTCGGATGAGGAAATTGGTGAGAATTAA |