Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6837
Gene name
Locationscaffold_62:7930..8979
Strand-
Gene length (bp)1049
Transcript length (bp)993
Coding sequence length (bp)993
Protein length (aa) 331

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 44 0.45

Transmembrane Domains

Domain # Start End Length
1 184 206 22
2 251 273 22
3 285 307 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 23.00 9.79 36.21
CcL In ants, during behavior modification 7.58 1.89 13.28
CcD In ants, recently dead 4.81 1.04 8.57

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.001851 yes
SC16a CcD 0.000286 yes
CcL CcD 0.258560 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6837
METAKDNTAAEDIMADAGQTEETSSTLRRRQESKTTPRNQRGLAIPVTQSLTPSPAFSAVSRRSAAAAPMSPTSA
PEDFWRLLPVGQNSRRNSSVATTDRQRVRRAPSWMASTPSESAAQAARESPLTPFPPLRTASGAELGEATVEEPG
ASTHEALPTSSQQDLVADRPNRHQWSLNTAMHGVVLFGQCLVTLAVLSGFLYCAVVDIGSEKLKNSGMPWKYAEP
SLGLILATCGGVLALHETRVLSTVAVLYLQALILVMTMGTSLALWIWILTHTTSQIVKGAVVSGVTMLMGTAMIA
FFRAALIWWIIEDHGELGGSGFSDEEIGEN*
Coding >Ophio5|6837
ATGGAGACGGCCAAGGACAACACTGCGGCTGAAGATATCATGGCCGACGCGGGTCAGACCGAGGAGACGAGCTCG
ACGCTTCGCCGTCGACAGGAGAGTAAGACCACGCCACGCAATCAGCGTGGATTAGCTATCCCCGTGACGCAGTCG
TTGACGCCCTCACCTGCTTTTTCAGCCGTCTCAAGGCGATCGGCTGCTGCGGCGCCCATGTCGCCCACGTCCGCT
CCTGAAGACTTCTGGCGTCTGCTCCCTGTCGGCCAGAACTCGCGGCGGAACTCGAGTGTGGCGACGACGGATAGG
CAGCGCGTCAGACGGGCTCCGAGCTGGATGGCGTCAACGCCGTCCGAGTCGGCTGCTCAGGCGGCTAGAGAGTCG
CCGCTGACTCCATTTCCACCCTTGCGGACTGCGTCTGGTGCAGAGCTGGGGGAAGCAACTGTTGAAGAGCCGGGG
GCATCGACGCATGAAGCATTGCCGACTTCGTCTCAGCAGGATCTGGTCGCGGACCGACCCAATCGTCACCAATGG
AGCCTCAATACTGCCATGCACGGCGTCGTCCTGTTTGGGCAGTGCCTTGTCACGCTTGCCGTCTTGAGCGGCTTT
CTCTACTGCGCTGTCGTGGACATTGGCAGCGAGAAGCTCAAGAATTCGGGCATGCCATGGAAATACGCAGAGCCG
TCTCTGGGCCTCATCCTCGCCACTTGTGGCGGCGTGCTCGCCCTGCACGAGACGCGCGTGCTGTCGACCGTCGCG
GTGCTGTACCTGCAGGCGCTGATCCTCGTCATGACCATGGGCACCTCGCTCGCCCTGTGGATCTGGATTTTGACC
CACACCACCAGCCAGATTGTCAAGGGAGCCGTCGTCAGCGGCGTGACTATGCTCATGGGAACGGCCATGATTGCC
TTCTTCAGAGCGGCCTTGATCTGGTGGATTATCGAGGATCACGGCGAGCTGGGCGGCAGTGGCTTTTCGGATGAG
GAAATTGGTGAGAATTAA
Transcript >Ophio5|6837
ATGGAGACGGCCAAGGACAACACTGCGGCTGAAGATATCATGGCCGACGCGGGTCAGACCGAGGAGACGAGCTCG
ACGCTTCGCCGTCGACAGGAGAGTAAGACCACGCCACGCAATCAGCGTGGATTAGCTATCCCCGTGACGCAGTCG
TTGACGCCCTCACCTGCTTTTTCAGCCGTCTCAAGGCGATCGGCTGCTGCGGCGCCCATGTCGCCCACGTCCGCT
CCTGAAGACTTCTGGCGTCTGCTCCCTGTCGGCCAGAACTCGCGGCGGAACTCGAGTGTGGCGACGACGGATAGG
CAGCGCGTCAGACGGGCTCCGAGCTGGATGGCGTCAACGCCGTCCGAGTCGGCTGCTCAGGCGGCTAGAGAGTCG
CCGCTGACTCCATTTCCACCCTTGCGGACTGCGTCTGGTGCAGAGCTGGGGGAAGCAACTGTTGAAGAGCCGGGG
GCATCGACGCATGAAGCATTGCCGACTTCGTCTCAGCAGGATCTGGTCGCGGACCGACCCAATCGTCACCAATGG
AGCCTCAATACTGCCATGCACGGCGTCGTCCTGTTTGGGCAGTGCCTTGTCACGCTTGCCGTCTTGAGCGGCTTT
CTCTACTGCGCTGTCGTGGACATTGGCAGCGAGAAGCTCAAGAATTCGGGCATGCCATGGAAATACGCAGAGCCG
TCTCTGGGCCTCATCCTCGCCACTTGTGGCGGCGTGCTCGCCCTGCACGAGACGCGCGTGCTGTCGACCGTCGCG
GTGCTGTACCTGCAGGCGCTGATCCTCGTCATGACCATGGGCACCTCGCTCGCCCTGTGGATCTGGATTTTGACC
CACACCACCAGCCAGATTGTCAAGGGAGCCGTCGTCAGCGGCGTGACTATGCTCATGGGAACGGCCATGATTGCC
TTCTTCAGAGCGGCCTTGATCTGGTGGATTATCGAGGATCACGGCGAGCTGGGCGGCAGTGGCTTTTCGGATGAG
GAAATTGGTGAGAATTAA
Gene >Ophio5|6837
ATGGAGACGGCCAAGGACAACACTGCGGCTGAAGATATCATGGCCGACGCGGGTCAGACCGAGGAGACGAGCTCG
ACGCTTCGCCGTCGACAGGAGAGTAAGACCACGCCACGCAATCAGCGTGGATTAGCTATCCCCGTGACGCAGTCG
TTGACGCCCTCACCTGCTTTTTCAGCCGTCTCAAGGCGATCGGCTGCTGCGGCGCCCATGTCGCCCACGTCCGCT
CCTGAAGACTTCTGGCGTCTGCTCCCTGTCGGCCAGAACTCGCGGCGGAACTCGAGTGTGGCGACGACGGATAGG
CAGCGCGTCAGACGGGCTCCGAGCTGGATGGCGTCAACGCCGTCCGAGTCGGCTGCTCAGGCGGCTAGAGAGTCG
CCGCTGACTCCATTTCCACCCTTGCGGACTGCGTCTGGTGCAGAGCTGGGGGAAGCAACTGTTGAAGAGCCGGGG
GCATCGACGCATGAAGCATTGCCGACTTCGTCTCAGCAGGATCTGGTCGCGGACCGACCCAATCGTCACCAATGG
AGCCTCAATACTGCCATGCACGGCGTCGTCCTGTTTGGGCAGTGCCTTGTCACGCTTGCCGTCTTGAGCGGCTTT
CTCTACTGCGCTGTCGTGGACATTGGCAGCGAGAAGCTCAAGAATTCGGGCATGTCAGTATACCACTACTCCTCT
CGCCATACACTCTGGTTGCTAACTACTTGTACAGGCCATGGAAATACGCAGAGCCGTCTCTGGGCCTCATCCTCG
CCACTTGTGGCGGCGTGCTCGCCCTGCACGAGACGCGCGTGCTGTCGACCGTCGCGGTGCTGTACCTGCAGGCGC
TGATCCTCGTCATGACCATGGGCACCTCGCTCGCCCTGTGGATCTGGATTTTGACCCACACCACCAGCCAGATTG
TCAAGGGAGCCGTCGTCAGCGGCGTGACTATGCTCATGGGAACGGCCATGATTGCCTTCTTCAGAGCGGCCTTGA
TCTGGTGGATTATCGAGGATCACGGCGAGCTGGGCGGCAGTGGCTTTTCGGATGAGGAAATTGGTGAGAATTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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