Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6834
Gene name
Locationscaffold_619:7874..10845
Strand+
Gene length (bp)2971
Transcript length (bp)2265
Coding sequence length (bp)2262
Protein length (aa) 754

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04082 Fungal_trans Fungal specific transcription factor domain 1.2E-08 237 435
PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 1.0E-06 104 135

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0006351 transcription, DNA-templated Yes
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Yes
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0008270 zinc ion binding Yes
GO:0003677 DNA binding Yes
GO:0003676 nucleic acid binding No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0003674 molecular_function No
GO:0044237 cellular metabolic process No
GO:0043169 cation binding No
GO:0043167 ion binding No
GO:0008152 metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1901576 organic substance biosynthetic process No
GO:0010468 regulation of gene expression No
GO:0046872 metal ion binding No
GO:0046483 heterocycle metabolic process No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0065007 biological regulation No
GO:0090304 nucleic acid metabolic process No
GO:0044238 primary metabolic process No
GO:0031323 regulation of cellular metabolic process No
GO:0140110 transcription regulator activity No
GO:0050794 regulation of cellular process No
GO:0019222 regulation of metabolic process No
GO:0018130 heterocycle biosynthetic process No
GO:0060255 regulation of macromolecule metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0008150 biological_process No
GO:1901360 organic cyclic compound metabolic process No
GO:0003700 DNA-binding transcription factor activity No
GO:0009058 biosynthetic process No
GO:0044249 cellular biosynthetic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0051252 regulation of RNA metabolic process No
GO:0031326 regulation of cellular biosynthetic process No
GO:0006807 nitrogen compound metabolic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0046914 transition metal ion binding No
GO:2001141 regulation of RNA biosynthetic process No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:0097159 organic cyclic compound binding No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0019438 aromatic compound biosynthetic process No
GO:0050789 regulation of biological process No
GO:0016070 RNA metabolic process No
GO:0097659 nucleic acid-templated transcription No
GO:0009889 regulation of biosynthetic process No
GO:0009059 macromolecule biosynthetic process No
GO:0080090 regulation of primary metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0032774 RNA biosynthetic process No
GO:0009987 cellular process No
GO:0043170 macromolecule metabolic process No
GO:0005488 binding No
GO:0071704 organic substance metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 38 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Fungal Specific TF

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 50.02 27.14 72.89
CcL In ants, during behavior modification 80.33 35.47 125.20
CcD In ants, recently dead 74.36 39.17 109.56

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.066153 no
SC16a CcD 0.082809 no
CcL CcD 0.795916 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6834
MAERASTPQVQRWMVNLNSPPFFPNFVRLDSVPVAAGQRDGAKREQTLSERDVSREIMLDVLGQSLARHGIPVCG
RSFSRSDLLRRHAGIHGGAATMPDSRRGKACDTCHANKTRCDGGLQCSLCSKRGVACTYGRRDAVLAAAFESAPN
RAPTAPDDLPASGPDSPPDTSEPETVLPGFPPAFFFVANAAGSRGTSTTWAALRSILGTVAARSGTASTTSPPPS
AIPKAWLAACVESYLATVHQRWPLLHGPSVDEMTDNVALIASMVMMTAWLHCDRSFRQLLMEMHGLLVDQCFKQL
TSDNLDPSRPWPIETYQVALLNVIFALESGRAVCISKCRHLLSLLVAALRANGCFDGEAVERQRRTHFPGDFVPW
VYSMVERWRRLAACAFQVDTYLSLLCNEPPLLRREELALGLPSTFSIWNAYGLDVFFPRHRDEPWRRGSFTMSCL
DMAAPQQLPSAVLVEDIQACLLGAWNDIWVLQQLRRNRHGAAAARAETVARQLRLCKLQLEGLADAVERPDVHRR
YADFLLRAYLGKELPTQPAWRERVLTRLASHVFSARMLYHLLSLYLHADVQAMRDDDIGPDASTTMPRPVSPAWQ
RRALLIREWALSADGRAALLQAVLVWRTYHEAAPSAPEGSADPVVYMALSAAATVLSTCVIHAVHACVCGGGDAG
GADAGVGPLSAAESAPGVDEWLARGGGAGGGLSLHGLAVCRCNAATWLTRFAEALARGGERWELGSIAASNCLSR
LDFS
Coding >Ophio5|6834
ATGGCCGAGCGGGCGTCAACACCACAAGTCCAGCGCTGGATGGTCAACTTAAACAGCCCCCCCTTTTTCCCCAAC
TTTGTGCGGCTTGACTCGGTTCCGGTCGCGGCAGGACAGCGAGACGGTGCAAAACGCGAACAAACGTTGAGCGAG
AGAGACGTTAGCCGAGAGATCATGCTCGACGTGCTTGGACAGTCTCTAGCACGACATGGCATCCCAGTGTGCGGT
CGGTCCTTCAGCCGCAGTGATCTTCTGCGCCGCCATGCCGGCATCCACGGAGGTGCGGCCACCATGCCGGATTCG
CGCCGTGGCAAGGCCTGCGACACGTGCCACGCCAACAAGACCAGATGTGACGGCGGCCTTCAGTGTTCTCTTTGC
AGCAAGCGAGGCGTCGCCTGCACCTACGGCCGACGAGACGCCGTCCTGGCCGCCGCCTTCGAATCGGCTCCGAAC
CGGGCCCCCACCGCCCCCGACGACCTGCCGGCCTCGGGCCCCGACTCTCCTCCCGACACCTCGGAACCCGAGACG
GTGCTGCCTGGCTTCCCGCCCGCCTTCTTCTTCGTCGCCAACGCCGCCGGAAGCAGGGGCACCTCGACCACCTGG
GCCGCGCTGAGGTCTATCCTGGGCACTGTGGCTGCCCGGTCCGGCACCGCATCGACTACGTCGCCGCCGCCGTCG
GCCATTCCGAAAGCCTGGCTCGCGGCTTGCGTCGAATCGTATCTGGCCACGGTCCACCAGCGTTGGCCCCTCTTG
CACGGACCCAGCGTGGACGAGATGACGGACAATGTGGCCCTGATCGCCTCCATGGTCATGATGACGGCCTGGCTG
CACTGCGACCGTAGCTTTAGACAGCTGCTGATGGAGATGCACGGCCTCCTCGTCGACCAATGCTTCAAGCAGCTC
ACAAGCGACAACTTGGACCCGAGCCGGCCCTGGCCCATCGAGACATACCAGGTTGCCCTTCTCAACGTCATCTTC
GCCTTGGAGAGCGGGAGGGCTGTCTGCATCAGCAAATGTCGCCACCTGCTGAGCCTCCTCGTGGCGGCGCTACGG
GCCAACGGCTGCTTCGACGGTGAGGCGGTCGAACGCCAGCGCCGCACGCACTTCCCCGGCGACTTCGTGCCATGG
GTGTACTCGATGGTGGAGCGATGGAGGAGACTGGCGGCGTGCGCCTTTCAGGTCGACACATACCTGTCACTCCTC
TGTAACGAGCCGCCGCTGCTACGGCGCGAGGAGCTTGCGTTGGGCCTGCCGTCGACGTTTAGCATATGGAACGCC
TACGGGCTAGACGTCTTCTTCCCGCGTCACCGCGATGAGCCGTGGCGACGGGGTTCCTTTACCATGTCGTGTCTC
GACATGGCGGCCCCGCAGCAGCTGCCGTCGGCCGTGCTGGTCGAGGATATCCAAGCCTGCCTGCTGGGCGCTTGG
AACGACATCTGGGTGCTGCAGCAGCTGCGGCGCAACCGGCACGGCGCTGCGGCGGCCCGGGCCGAGACTGTCGCC
CGCCAGCTACGGCTCTGCAAGCTTCAGCTCGAAGGCCTGGCCGACGCCGTGGAGCGGCCCGATGTCCACCGCCGA
TACGCCGACTTCTTGCTACGCGCTTACTTGGGCAAAGAGCTCCCGACACAGCCGGCGTGGCGCGAGAGAGTGCTG
ACGCGGCTGGCCAGTCACGTCTTCAGCGCCCGAATGCTCTACCACCTGCTCAGCTTGTATCTGCACGCCGACGTC
CAGGCGATGCGGGACGACGATATCGGGCCCGATGCGTCGACGACGATGCCGCGGCCCGTCTCGCCGGCGTGGCAG
CGCCGAGCCCTCCTGATCCGGGAATGGGCCCTCTCGGCCGACGGACGGGCGGCACTGCTTCAGGCGGTACTCGTT
TGGCGGACCTATCACGAAGCGGCGCCGTCTGCGCCCGAGGGCTCGGCCGATCCGGTCGTGTACATGGCGCTTTCG
GCCGCGGCAACGGTTCTGTCGACCTGCGTCATCCATGCCGTTCATGCCTGCGTCTGCGGAGGAGGCGACGCGGGC
GGGGCCGATGCCGGCGTCGGCCCACTCAGCGCCGCCGAGTCGGCGCCGGGTGTGGACGAGTGGCTGGCCCGAGGC
GGTGGTGCCGGAGGCGGCCTCTCGCTGCACGGGCTCGCCGTTTGCAGGTGCAACGCGGCCACCTGGCTCACCCGC
TTCGCCGAGGCCCTGGCACGAGGAGGCGAGCGCTGGGAGCTGGGGAGCATCGCGGCCAGCAATTGCCTGTCGCGC
CTGGACTTTTCC
Transcript >Ophio5|6834
ATGGCCGAGCGGGCGTCAACACCACAAGTCCAGCGCTGGATGGTCAACTTAAACAGCCCCCCCTTTTTCCCCAAC
TTTGTGCGGCTTGACTCGGTTCCGGTCGCGGCAGGACAGCGAGACGGTGCAAAACGCGAACAAACGTTGAGCGAG
AGAGACGTTAGCCGAGAGATCATGCTCGACGTGCTTGGACAGTCTCTAGCACGACATGGCATCCCAGTGTGCGGT
CGGTCCTTCAGCCGCAGTGATCTTCTGCGCCGCCATGCCGGCATCCACGGAGGTGCGGCCACCATGCCGGATTCG
CGCCGTGGCAAGGCCTGCGACACGTGCCACGCCAACAAGACCAGATGTGACGGCGGCCTTCAGTGTTCTCTTTGC
AGCAAGCGAGGCGTCGCCTGCACCTACGGCCGACGAGACGCCGTCCTGGCCGCCGCCTTCGAATCGGCTCCGAAC
CGGGCCCCCACCGCCCCCGACGACCTGCCGGCCTCGGGCCCCGACTCTCCTCCCGACACCTCGGAACCCGAGACG
GTGCTGCCTGGCTTCCCGCCCGCCTTCTTCTTCGTCGCCAACGCCGCCGGAAGCAGGGGCACCTCGACCACCTGG
GCCGCGCTGAGGTCTATCCTGGGCACTGTGGCTGCCCGGTCCGGCACCGCATCGACTACGTCGCCGCCGCCGTCG
GCCATTCCGAAAGCCTGGCTCGCGGCTTGCGTCGAATCGTATCTGGCCACGGTCCACCAGCGTTGGCCCCTCTTG
CACGGACCCAGCGTGGACGAGATGACGGACAATGTGGCCCTGATCGCCTCCATGGTCATGATGACGGCCTGGCTG
CACTGCGACCGTAGCTTTAGACAGCTGCTGATGGAGATGCACGGCCTCCTCGTCGACCAATGCTTCAAGCAGCTC
ACAAGCGACAACTTGGACCCGAGCCGGCCCTGGCCCATCGAGACATACCAGGTTGCCCTTCTCAACGTCATCTTC
GCCTTGGAGAGCGGGAGGGCTGTCTGCATCAGCAAATGTCGCCACCTGCTGAGCCTCCTCGTGGCGGCGCTACGG
GCCAACGGCTGCTTCGACGGTGAGGCGGTCGAACGCCAGCGCCGCACGCACTTCCCCGGCGACTTCGTGCCATGG
GTGTACTCGATGGTGGAGCGATGGAGGAGACTGGCGGCGTGCGCCTTTCAGGTCGACACATACCTGTCACTCCTC
TGTAACGAGCCGCCGCTGCTACGGCGCGAGGAGCTTGCGTTGGGCCTGCCGTCGACGTTTAGCATATGGAACGCC
TACGGGCTAGACGTCTTCTTCCCGCGTCACCGCGATGAGCCGTGGCGACGGGGTTCCTTTACCATGTCGTGTCTC
GACATGGCGGCCCCGCAGCAGCTGCCGTCGGCCGTGCTGGTCGAGGATATCCAAGCCTGCCTGCTGGGCGCTTGG
AACGACATCTGGGTGCTGCAGCAGCTGCGGCGCAACCGGCACGGCGCTGCGGCGGCCCGGGCCGAGACTGTCGCC
CGCCAGCTACGGCTCTGCAAGCTTCAGCTCGAAGGCCTGGCCGACGCCGTGGAGCGGCCCGATGTCCACCGCCGA
TACGCCGACTTCTTGCTACGCGCTTACTTGGGCAAAGAGCTCCCGACACAGCCGGCGTGGCGCGAGAGAGTGCTG
ACGCGGCTGGCCAGTCACGTCTTCAGCGCCCGAATGCTCTACCACCTGCTCAGCTTGTATCTGCACGCCGACGTC
CAGGCGATGCGGGACGACGATATCGGGCCCGATGCGTCGACGACGATGCCGCGGCCCGTCTCGCCGGCGTGGCAG
CGCCGAGCCCTCCTGATCCGGGAATGGGCCCTCTCGGCCGACGGACGGGCGGCACTGCTTCAGGCGGTACTCGTT
TGGCGGACCTATCACGAAGCGGCGCCGTCTGCGCCCGAGGGCTCGGCCGATCCGGTCGTGTACATGGCGCTTTCG
GCCGCGGCAACGGTTCTGTCGACCTGCGTCATCCATGCCGTTCATGCCTGCGTCTGCGGAGGAGGCGACGCGGGC
GGGGCCGATGCCGGCGTCGGCCCACTCAGCGCCGCCGAGTCGGCGCCGGGTGTGGACGAGTGGCTGGCCCGAGGC
GGTGGTGCCGGAGGCGGCCTCTCGCTGCACGGGCTCGCCGTTTGCAGGTGCAACGCGGCCACCTGGCTCACCCGC
TTCGCCGAGGCCCTGGCACGAGGAGGCGAGCGCTGGGAGCTGGGGAGCATCGCGGCCAGCAATTGCCTGTCGCGC
CTGGACTTTTCCTGA
Gene >Ophio5|6834
ATGGCCGAGCGGGCGTCAACACCACAAGTCCAGCGCTGGATGGTCAACTTAAACAGCCGTATATCCCACCCGTTT
AGCAGTTCTCACGCTTGCAACTGACGCCCACGAGACGGACGCCTCTGACTGACGTGGTTCACCTGGATAAGCCCC
CTTTTTCCCCAACTTTGTGCGGCTTGACTCGGTTCCGGTCGCGGCAGGACAGCGAGACGGTGCAAAACGCGAACA
AACGTTGAGCGAGAGAGACGTGTAAGTGAGATCGATGCCGTGTTTTTTTTGTTGTTGTTTGTTTGCACTGTTCTG
TTCTGTTATTGTTCTCATCTCAGGCCTCTGTCTTTTTTTTTCTTTCCCCATCTCGACCAGCTCCATCCCCCCGTT
CCGTTCCTCTCTCTACCGTCGCCGAAGTCGTCGACCGTTGTCGGGTATTCCAGTCGCGTAACGAAAGAAAAATAC
AAAAACATGGCCATTCCCCTATTTATTTTGGCAATGTCTCGCCCCTCCCCCCTTTTTCCTCCCATAAAACAGGGG
ATTGATGTCTCGGCTCTGCTCTAACAAGGTAGCTCAACAGTAGCCGAGAGATCATGCTCGACGTGCTTGGACAGT
CTCTAGCACGACATGGCATCCCAGTCTCCGGACCGTCACGGTTGCCATTGCGGCAAGAGTTTTCTTCGCAAGGAG
CATTTGCGCCGTCACCAGGCCACCCATGGCGGACCGGCTTTTAGCTGTCAGGTGTGCGGTCGGTCCTTCAGCCGC
AGGTGAGTCCGGGCTCCGAGGACTGCATCGTCGTGTGTGTCTCACCCGGACCCAGTGATCTTCTGCGCCGCCATG
CCGGCATCCACGGAGGTGCGGCCACCATGCCGGATTCGCGCCGTGGCAAGGCCTGCGACACGTGCCACGCCAACA
AGACCAGATGTGACGGCGGCCTTCAGTGTTCTCTTTGCAGCAAGCGAGGCGTCGCCTGCACCTACGGCCGACGAG
ACGCCGTCCTGGCCGCCGCCTTCGAATCGGCTCCGAACCGGGCCCCCACCGCCCCCGACGACCTGCCGGCCTCGG
GCCCCGACTCTCCTCCCGACACCTCGGAACCCGAGACGGTGCTGCCTGGCTTCCCGCCCGCCTTCTTCTTCGTCG
CCAACGCCGCCGGAAGCAGGGGCACCTCGACCACCTGGGCCGCGCTGAGGTCTATCCTGGGCACTGTGGCTGCCC
GGTCCGGCACCGCATCGACTACGTCGCCGCCGCCGTCGGCCATTCCGAAAGCCTGGCTCGCGGCTTGCGTCGAAT
CGTATCTGGCCACGGTCCACCAGCGTTGGCCCCTCTTGCACGGACCCAGCGTGGACGAGATGACGGACAATGTGG
CCCTGATCGCCTCCATGGTCATGATGACGGCCTGGCTGCACTGCGACCGTAGCTTTAGACAGCTGCTGATGGAGA
TGCACGGCCTCCTCGTCGACCAATGCTTCAAGCAGCTCGTACGTCGACTGCTTCCTCACGCCCAGAGTGCACGCG
AACTGACCCCTAGCGAGCCAGACAAGCGACAACTTGGACCCGAGCCGGCCCTGGCCCATCGAGACATACCAGGTT
GCCCTTCTCAACGTCATCTTCGCCTTGGAGAGCGGGGTGCGTATCCTTCCCCCCTCCCCTTTTGAACCCCCTCCC
TCCCGACCGAAGCTTTTGGACTGACAAGCCGATGTGCGTTTGATAGAGGGCTGTCTGCATCAGCAAATGTCGCCA
CCTGCTGAGCCTCCTCGTGGCGGCGCTACGGGCCAACGGCTGCTTCGACGGTGAGGCGGTCGAACGCCAGCGCCG
CACGCACTTCCCCGGCGACTTCGTGCCATGGGTGTACTCGATGGTGGAGCGATGGAGGAGACTGGCGGCGTGCGC
CTTTCAGGTCGACACATACCTGTCACTCCTCTGTAACGAGCCGCCGCTGCTACGGCGCGAGGAGCTTGCGTTGGG
CCTGCCGTCGACGTTTAGCATATGGAACGCCTACGGGCTAGACGTCTTCTTCCCGCGTCACCGCGATGAGCCGTG
GCGACGGGGTTCCTTTACCATGTCGTGTCTCGACATGGCGGCCCCGCAGCAGCTGCCGTCGGCCGTGCTGGTCGA
GGATATCCAAGCCTGCCTGCTGGGCGCTTGGAACGACATCTGGGTGCTGCAGCAGCTGCGGCGCAACCGGCACGG
CGCTGCGGCGGCCCGGGCCGAGACTGTCGCCCGCCAGCTACGGCTCTGCAAGCTTCAGCTCGAAGGCCTGGCCGA
CGCCGTGGAGCGGCCCGATGTCCACCGCCGATACGCCGACTTCTTGCTACGCGCTTACTTGGGCAAAGAGCTCCC
GACACAGCCGGCGTGGCGCGAGAGAGTGCTGACGCGGCTGGCCAGTCACGTCTTCAGCGCCCGAATGCTCTACCA
CCTGCTCAGCTTGTATCTGCACGCCGACGTCCAGGCGATGCGGGACGACGATATCGGGCCCGATGCGTCGACGAC
GATGCCGCGGCCCGTCTCGCCGGCGTGGCAGCGCCGAGCCCTCCTGATCCGGGAATGGGCCCTCTCGGCCGACGG
ACGGGCGGCACTGCTTCAGGCGGTACTCGTTTGGCGGACCTATCACGAAGCGGCGCCGTCTGCGCCCGAGGGCTC
GGCCGATCCGGTCGTGTACATGGCGCTTTCGGCCGCGGCAACGGTTCTGTCGACCTGCGTCATCCATGCCGTTCA
TGCCTGCGTCTGCGGAGGAGGCGACGCGGGCGGGGCCGATGCCGGCGTCGGCCCACTCAGCGCCGCCGAGTCGGC
GCCGGGTGTGGACGAGTGGCTGGCCCGAGGCGGTGGTGCCGGAGGCGGCCTCTCGCTGCACGGGCTCGCCGTTTG
CAGGTGCAACGCGGCCACCTGGCTCACCCGCTTCGCCGAGGCCCTGGCACGAGGAGGCGAGCGCTGGGAGCTGGG
GAGCATCGCGGCCAGCAATTGCCTGTCGCGCCTGGACTTTTCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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