Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6819
Gene name
Locationscaffold_615:3720..4788
Strand+
Gene length (bp)1068
Transcript length (bp)1068
Coding sequence length (bp)1065
Protein length (aa) 355

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01301 Glyco_hydro_35 Glycosyl hydrolases family 35 2.7E-17 4 73
PF13364 BetaGal_dom4_5 Beta-galactosidase jelly roll domain 1.2E-05 250 325

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q3UPY5|GLBL2_MOUSE Beta-galactosidase-1-like protein 2 OS=Mus musculus GN=Glb1l2 PE=1 SV=1 11 326 5.0E-43
sp|P48982|BGAL_XANMN Beta-galactosidase OS=Xanthomonas manihotis GN=bga PE=1 SV=1 3 308 1.0E-40
sp|P23780|BGAL_MOUSE Beta-galactosidase OS=Mus musculus GN=Glb1 PE=1 SV=1 19 328 2.0E-39
sp|Q54GE1|BGAL1_DICDI Beta-galactosidase 1 OS=Dictyostelium discoideum GN=glb1 PE=3 SV=1 11 326 3.0E-39
sp|Q8NCI6|GLBL3_HUMAN Beta-galactosidase-1-like protein 3 OS=Homo sapiens GN=GLB1L3 PE=2 SV=3 15 326 6.0E-39
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Swissprot ID Swissprot Description Start End E-value
sp|Q3UPY5|GLBL2_MOUSE Beta-galactosidase-1-like protein 2 OS=Mus musculus GN=Glb1l2 PE=1 SV=1 11 326 5.0E-43
sp|P48982|BGAL_XANMN Beta-galactosidase OS=Xanthomonas manihotis GN=bga PE=1 SV=1 3 308 1.0E-40
sp|P23780|BGAL_MOUSE Beta-galactosidase OS=Mus musculus GN=Glb1 PE=1 SV=1 19 328 2.0E-39
sp|Q54GE1|BGAL1_DICDI Beta-galactosidase 1 OS=Dictyostelium discoideum GN=glb1 PE=3 SV=1 11 326 3.0E-39
sp|Q8NCI6|GLBL3_HUMAN Beta-galactosidase-1-like protein 3 OS=Homo sapiens GN=GLB1L3 PE=2 SV=3 15 326 6.0E-39
sp|O19015|BGAL_FELCA Beta-galactosidase OS=Felis catus GN=GLB1 PE=2 SV=1 4 349 1.0E-38
sp|Q9TRY9|BGAL_CANLF Beta-galactosidase OS=Canis lupus familiaris GN=GLB1 PE=2 SV=3 5 328 2.0E-38
sp|Q8VC60|GLB1L_MOUSE Beta-galactosidase-1-like protein OS=Mus musculus GN=Glb1l PE=1 SV=1 17 336 1.0E-37
sp|Q8IW92|GLBL2_HUMAN Beta-galactosidase-1-like protein 2 OS=Homo sapiens GN=GLB1L2 PE=2 SV=1 11 326 1.0E-37
sp|Q6UWU2|GLB1L_HUMAN Beta-galactosidase-1-like protein OS=Homo sapiens GN=GLB1L PE=2 SV=1 17 336 1.0E-37
sp|Q60HF6|BGAL_MACFA Beta-galactosidase OS=Macaca fascicularis GN=GLB1 PE=2 SV=1 5 349 1.0E-37
sp|P16278|BGAL_HUMAN Beta-galactosidase OS=Homo sapiens GN=GLB1 PE=1 SV=2 2 328 2.0E-37
sp|Q58D55|BGAL_BOVIN Beta-galactosidase OS=Bos taurus GN=GLB1 PE=2 SV=1 19 328 3.0E-37
sp|Q95LV1|GLB1L_MACFA Beta-galactosidase-1-like protein OS=Macaca fascicularis GN=GLB1L PE=2 SV=1 17 336 4.0E-37
sp|Q5R7P4|BGAL_PONAB Beta-galactosidase OS=Pongo abelii GN=GLB1 PE=2 SV=1 2 328 8.0E-37
sp|A2RSQ1|GLBL3_MOUSE Beta-galactosidase-1-like protein 3 OS=Mus musculus GN=Glb1l3 PE=1 SV=1 17 326 5.0E-33
sp|Q5XIL5|GLBL3_RAT Beta-galactosidase-1-like protein 3 OS=Rattus norvegicus GN=Glb1l3 PE=2 SV=1 17 326 2.0E-32
sp|Q93Z24|BGA17_ARATH Beta-galactosidase 17 OS=Arabidopsis thaliana GN=BGAL17 PE=2 SV=1 4 328 8.0E-29
sp|Q0DGD7|BGAL8_ORYSJ Beta-galactosidase 8 OS=Oryza sativa subsp. japonica GN=Os05g0539400 PE=2 SV=1 4 327 1.0E-24
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 13 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.31 0.00 0.83
CcL In ants, during behavior modification 22.02 8.88 35.16
CcD In ants, recently dead 7.16 2.13 12.20

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.014705 yes
SC16a CcD 0.014705 yes
CcL CcD 0.000535 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6819
MDRTTSDLAWVLSGEDSFNIYMFHGGTNWGFDNGAVWSGDRSLAVTTSYDYGAPLDESGRPTELYHQIRETIAKH
VPAGSIPHVPAVPRLIQTGDIVLKPVLSLFDMLPKQPMIESAAPVPMEHMDQSYGFVLYQHTVEEEAEGILFVGD
GPRDRVLVYQNGHRVGIIDGTYSSPGRVRVRLNEGDLLQLLVENLGRVDKGHKFEDQRKGIVGNVTVGTRQTLER
WKTYSLPLTKLPRGLSRGDKVVVFHRQSPMFYTGSFRLAENAQPGLGSDMFLSIDKAIKGQVWVNGVNLGRYWAM
GPQQSLYLPGCYLNAAGRSNKIVVLELEPEANRPMVAKGLSSREWFNRPDPDSVV
Coding >Ophio5|6819
ATGGACCGCACCACGAGTGACCTGGCATGGGTTCTGTCAGGGGAAGATTCTTTCAATATCTACATGTTCCACGGC
GGAACAAACTGGGGCTTTGACAACGGTGCAGTCTGGTCTGGCGATCGAAGCTTGGCAGTGACGACGAGCTACGAC
TACGGCGCGCCTCTGGATGAATCCGGGAGGCCAACCGAATTGTACCACCAGATTCGTGAGACCATCGCCAAACAT
GTTCCCGCTGGAAGCATTCCTCATGTGCCGGCCGTACCAAGGCTCATCCAGACAGGCGACATCGTCCTCAAGCCA
GTGCTGTCCCTATTCGACATGCTACCAAAACAGCCCATGATCGAATCTGCCGCTCCGGTTCCCATGGAGCATATG
GACCAATCGTATGGTTTCGTCCTGTACCAACATACAGTTGAGGAGGAGGCCGAAGGAATTCTTTTCGTCGGAGAC
GGGCCACGCGATCGTGTCCTTGTATACCAGAACGGCCACAGAGTCGGCATCATCGACGGGACGTATTCTTCCCCT
GGGCGGGTGCGAGTAAGACTCAACGAGGGCGATTTGCTGCAGCTTCTGGTCGAGAACCTGGGCCGCGTCGACAAG
GGACACAAGTTCGAGGATCAACGAAAGGGCATCGTCGGCAACGTCACCGTCGGCACCCGACAAACTCTCGAGAGA
TGGAAGACATATTCCCTCCCGCTGACCAAACTTCCCAGGGGCTTATCAAGAGGTGACAAGGTCGTAGTATTCCAT
AGGCAATCTCCCATGTTCTACACGGGATCCTTCAGACTTGCCGAGAACGCCCAGCCCGGTCTCGGAAGCGACATG
TTTCTGTCCATCGACAAAGCTATCAAAGGCCAGGTCTGGGTCAACGGCGTCAACCTTGGGCGTTACTGGGCCATG
GGTCCTCAGCAGAGCCTATACTTGCCAGGGTGTTATCTCAATGCTGCTGGACGGTCCAACAAGATTGTCGTCCTG
GAGCTTGAGCCGGAGGCAAACAGGCCGATGGTTGCTAAAGGCCTCTCTTCCAGAGAATGGTTCAACAGACCAGAT
CCGGATTCCGTGGTG
Transcript >Ophio5|6819
ATGGACCGCACCACGAGTGACCTGGCATGGGTTCTGTCAGGGGAAGATTCTTTCAATATCTACATGTTCCACGGC
GGAACAAACTGGGGCTTTGACAACGGTGCAGTCTGGTCTGGCGATCGAAGCTTGGCAGTGACGACGAGCTACGAC
TACGGCGCGCCTCTGGATGAATCCGGGAGGCCAACCGAATTGTACCACCAGATTCGTGAGACCATCGCCAAACAT
GTTCCCGCTGGAAGCATTCCTCATGTGCCGGCCGTACCAAGGCTCATCCAGACAGGCGACATCGTCCTCAAGCCA
GTGCTGTCCCTATTCGACATGCTACCAAAACAGCCCATGATCGAATCTGCCGCTCCGGTTCCCATGGAGCATATG
GACCAATCGTATGGTTTCGTCCTGTACCAACATACAGTTGAGGAGGAGGCCGAAGGAATTCTTTTCGTCGGAGAC
GGGCCACGCGATCGTGTCCTTGTATACCAGAACGGCCACAGAGTCGGCATCATCGACGGGACGTATTCTTCCCCT
GGGCGGGTGCGAGTAAGACTCAACGAGGGCGATTTGCTGCAGCTTCTGGTCGAGAACCTGGGCCGCGTCGACAAG
GGACACAAGTTCGAGGATCAACGAAAGGGCATCGTCGGCAACGTCACCGTCGGCACCCGACAAACTCTCGAGAGA
TGGAAGACATATTCCCTCCCGCTGACCAAACTTCCCAGGGGCTTATCAAGAGGTGACAAGGTCGTAGTATTCCAT
AGGCAATCTCCCATGTTCTACACGGGATCCTTCAGACTTGCCGAGAACGCCCAGCCCGGTCTCGGAAGCGACATG
TTTCTGTCCATCGACAAAGCTATCAAAGGCCAGGTCTGGGTCAACGGCGTCAACCTTGGGCGTTACTGGGCCATG
GGTCCTCAGCAGAGCCTATACTTGCCAGGGTGTTATCTCAATGCTGCTGGACGGTCCAACAAGATTGTCGTCCTG
GAGCTTGAGCCGGAGGCAAACAGGCCGATGGTTGCTAAAGGCCTCTCTTCCAGAGAATGGTTCAACAGACCAGAT
CCGGATTCCGTGGTGTGA
Gene >Ophio5|6819
ATGGACCGCACCACGAGTGACCTGGCATGGGTTCTGTCAGGGGAAGATTCTTTCAATATCTACATGTTCCACGGC
GGAACAAACTGGGGCTTTGACAACGGTGCAGTCTGGTCTGGCGATCGAAGCTTGGCAGTGACGACGAGCTACGAC
TACGGCGCGCCTCTGGATGAATCCGGGAGGCCAACCGAATTGTACCACCAGATTCGTGAGACCATCGCCAAACAT
GTTCCCGCTGGAAGCATTCCTCATGTGCCGGCCGTACCAAGGCTCATCCAGACAGGCGACATCGTCCTCAAGCCA
GTGCTGTCCCTATTCGACATGCTACCAAAACAGCCCATGATCGAATCTGCCGCTCCGGTTCCCATGGAGCATATG
GACCAATCGTATGGTTTCGTCCTGTACCAACATACAGTTGAGGAGGAGGCCGAAGGAATTCTTTTCGTCGGAGAC
GGGCCACGCGATCGTGTCCTTGTATACCAGAACGGCCACAGAGTCGGCATCATCGACGGGACGTATTCTTCCCCT
GGGCGGGTGCGAGTAAGACTCAACGAGGGCGATTTGCTGCAGCTTCTGGTCGAGAACCTGGGCCGCGTCGACAAG
GGACACAAGTTCGAGGATCAACGAAAGGGCATCGTCGGCAACGTCACCGTCGGCACCCGACAAACTCTCGAGAGA
TGGAAGACATATTCCCTCCCGCTGACCAAACTTCCCAGGGGCTTATCAAGAGGTGACAAGGTCGTAGTATTCCAT
AGGCAATCTCCCATGTTCTACACGGGATCCTTCAGACTTGCCGAGAACGCCCAGCCCGGTCTCGGAAGCGACATG
TTTCTGTCCATCGACAAAGCTATCAAAGGCCAGGTCTGGGTCAACGGCGTCAACCTTGGGCGTTACTGGGCCATG
GGTCCTCAGCAGAGCCTATACTTGCCAGGGTGTTATCTCAATGCTGCTGGACGGTCCAACAAGATTGTCGTCCTG
GAGCTTGAGCCGGAGGCAAACAGGCCGATGGTTGCTAAAGGCCTCTCTTCCAGAGAATGGTTCAACAGACCAGAT
CCGGATTCCGTGGTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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