Protein ID | Ophio5|679 |
Gene name | |
Location | scaffold_1184:108..2465 |
Strand | + |
Gene length (bp) | 2357 |
Transcript length (bp) | 2175 |
Coding sequence length (bp) | 2172 |
Protein length (aa) | 724 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF19031 | Intu_longin_1 | First Longin domain of INTU, CCZ1 and HPS4 | 2.1E-05 | 19 | 129 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016192 | vesicle-mediated transport | Yes |
GO:0051234 | establishment of localization | No |
GO:0006810 | transport | No |
GO:0051179 | localization | No |
GO:0008150 | biological_process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 29 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|679 MASGAASSSGAVVPARLGFLAIYNPSLGRTDETMDEQIVYYASVTTQAASSHRRRRRRVRARARPTDGLTPQERH ERLRQIGLAQGMVSFGRGFADGAAVDAIDTDGARVVVHELEPGWWILASIDLTKMPLPPRLVNSAAEDSRFEYSS REMKPASLLVGDLLRAHNIFLMHHGSSLSGLFVHCRRSKFVALLGRYWDLFLSTWNVLLHGNPARDMFGAINVAA SGELGVGVGEEDRGSGEREVLEGLVGRIEGLVDLVVSKFGTDEDESEQDVSWLGTGREPAADDGAVFLGVGALSR KSLRDVTHWMEDLYTWGEHAYGVIESPTSVRRAGARCGSAAAHEDGAATEEPSAGAEDKAPPAESKTAASKPAGQ ADGRQWTKNAVAAADDGRLDKMLSYMKLGYGSYWTLPGATSQGTASRQPSSSRRPAPPKRTSSAGRFLIGLTGQM EETDDDGDAASSGCSEAEHNSRTVLRTVHVELESDGTRPEMTMVKDFVNPVSERQVAYSSYDVNKTDKLRVVIYV NRPFVFAFFFRLRTDSLAWDTLYRSLHYQLAPLRRPLLASTRYRPPSSQPPGGLYSLVWDPASLTVRAAVPNIPD QQQLRLGGGHSSLLDAFWSRADAVSTHLQLLLLQAATRSVTGTVERTLKTSRGWWIVWTRLGHGDDDDDDDCSAS GPGLPAKEIFLIRRASDHAGAADAVAAAGLVQGIGVDTRRYVEELLSLL |
Coding | >Ophio5|679 ATGGCCTCGGGCGCTGCCTCGTCTTCGGGGGCCGTCGTCCCCGCCCGCCTCGGCTTCCTAGCTATCTACAACCCA TCGCTGGGCAGGACGGACGAGACGATGGACGAGCAGATCGTCTACTATGCCTCGGTCACGACGCAAGCCGCCTCG TCTCATCGTCGACGCCGGCGTCGTGTCCGAGCTCGAGCTCGTCCGACGGACGGACTCACGCCCCAAGAGCGCCAT GAGCGTCTGCGTCAGATCGGCTTGGCTCAGGGCATGGTCAGCTTTGGTCGTGGCTTTGCTGATGGTGCTGCTGTC GATGCTATTGATACCGATGGCGCCCGCGTTGTCGTTCACGAGCTCGAGCCCGGTTGGTGGATCTTGGCCAGCATC GACTTGACCAAGATGCCGCTTCCCCCGCGTCTTGTCAACTCGGCCGCCGAAGACAGTAGGTTCGAGTATTCGTCG CGCGAGATGAAGCCGGCGTCGCTGCTCGTCGGAGATCTGCTACGGGCCCATAACATCTTTCTCATGCACCACGGC TCCTCTCTCAGCGGCCTCTTCGTCCACTGCCGTCGGTCCAAGTTCGTCGCGCTGCTGGGACGGTATTGGGATCTG TTCCTCTCTACCTGGAACGTGCTGCTGCACGGTAACCCGGCCAGGGACATGTTCGGGGCCATCAACGTGGCCGCC TCGGGCGAGCTGGGCGTCGGCGTCGGCGAGGAGGACCGTGGTAGTGGCGAGCGCGAGGTTCTCGAGGGCTTGGTC GGTAGGATAGAGGGCCTGGTCGATCTCGTCGTCTCCAAGTTCGGCACGGATGAGGACGAGTCGGAGCAGGACGTG TCTTGGCTCGGCACCGGTCGGGAGCCCGCGGCCGATGACGGCGCCGTCTTTCTCGGTGTCGGCGCCTTGTCGAGG AAATCGTTGAGGGACGTGACGCACTGGATGGAAGACTTGTACACCTGGGGTGAGCATGCCTACGGCGTCATCGAG AGTCCGACGTCGGTCCGCCGCGCCGGCGCCCGGTGCGGAAGTGCTGCTGCTCATGAGGACGGAGCGGCCACGGAG GAGCCGTCGGCCGGTGCCGAGGACAAGGCGCCGCCCGCAGAGAGCAAGACGGCGGCTTCCAAGCCCGCAGGCCAA GCCGACGGCCGGCAATGGACAAAGAATGCCGTCGCCGCCGCCGACGACGGCAGGCTGGACAAGATGCTCAGCTAC ATGAAGCTCGGCTACGGCTCGTACTGGACCCTCCCCGGGGCCACGAGCCAAGGCACGGCGTCCAGACAGCCGTCG TCCTCCCGGCGGCCGGCCCCCCCAAAGCGAACCTCATCGGCCGGACGTTTCCTCATCGGCCTCACGGGCCAGATG GAGGAGACGGATGACGATGGCGACGCAGCCTCGAGCGGCTGCTCCGAGGCCGAGCACAACTCGCGCACCGTCCTG CGCACCGTCCACGTCGAGCTCGAGAGCGACGGCACGAGGCCCGAGATGACCATGGTCAAGGACTTTGTCAACCCC GTCAGCGAGCGGCAAGTGGCCTACAGCTCGTACGACGTGAACAAGACGGACAAGCTGCGCGTCGTCATCTACGTC AACCGGCCCTTCGTCTTCGCCTTCTTCTTCCGCCTGCGCACCGATTCGCTCGCGTGGGACACGCTGTACCGCTCG CTGCACTACCAGCTGGCTCCGCTGAGGCGTCCGCTGCTGGCGTCGACGCGCTACCGTCCGCCGTCGTCGCAGCCT CCCGGCGGCCTGTACAGCCTCGTGTGGGACCCGGCTTCGCTGACGGTCCGGGCCGCCGTCCCCAACATACCGGAT CAGCAGCAGCTCCGGCTCGGCGGCGGCCACTCGTCGCTGCTCGACGCCTTTTGGTCTCGCGCCGATGCCGTCAGC ACCCATCTCCAGCTGCTGCTGTTGCAGGCCGCCACCCGCTCCGTCACCGGCACCGTCGAGCGCACTCTCAAGACG AGTCGAGGCTGGTGGATCGTGTGGACGCGTCTCGGCCATGGGGATGACGACGACGACGACGACTGCTCCGCCTCG GGCCCGGGTCTACCGGCCAAGGAGATTTTTCTCATACGCCGTGCCAGCGACCATGCCGGCGCGGCAGATGCTGTA GCCGCCGCCGGCTTGGTGCAGGGCATCGGTGTTGATACGCGCCGTTACGTCGAGGAGCTACTGAGCTTGCTG |
Transcript | >Ophio5|679 ATGGCCTCGGGCGCTGCCTCGTCTTCGGGGGCCGTCGTCCCCGCCCGCCTCGGCTTCCTAGCTATCTACAACCCA TCGCTGGGCAGGACGGACGAGACGATGGACGAGCAGATCGTCTACTATGCCTCGGTCACGACGCAAGCCGCCTCG TCTCATCGTCGACGCCGGCGTCGTGTCCGAGCTCGAGCTCGTCCGACGGACGGACTCACGCCCCAAGAGCGCCAT GAGCGTCTGCGTCAGATCGGCTTGGCTCAGGGCATGGTCAGCTTTGGTCGTGGCTTTGCTGATGGTGCTGCTGTC GATGCTATTGATACCGATGGCGCCCGCGTTGTCGTTCACGAGCTCGAGCCCGGTTGGTGGATCTTGGCCAGCATC GACTTGACCAAGATGCCGCTTCCCCCGCGTCTTGTCAACTCGGCCGCCGAAGACAGTAGGTTCGAGTATTCGTCG CGCGAGATGAAGCCGGCGTCGCTGCTCGTCGGAGATCTGCTACGGGCCCATAACATCTTTCTCATGCACCACGGC TCCTCTCTCAGCGGCCTCTTCGTCCACTGCCGTCGGTCCAAGTTCGTCGCGCTGCTGGGACGGTATTGGGATCTG TTCCTCTCTACCTGGAACGTGCTGCTGCACGGTAACCCGGCCAGGGACATGTTCGGGGCCATCAACGTGGCCGCC TCGGGCGAGCTGGGCGTCGGCGTCGGCGAGGAGGACCGTGGTAGTGGCGAGCGCGAGGTTCTCGAGGGCTTGGTC GGTAGGATAGAGGGCCTGGTCGATCTCGTCGTCTCCAAGTTCGGCACGGATGAGGACGAGTCGGAGCAGGACGTG TCTTGGCTCGGCACCGGTCGGGAGCCCGCGGCCGATGACGGCGCCGTCTTTCTCGGTGTCGGCGCCTTGTCGAGG AAATCGTTGAGGGACGTGACGCACTGGATGGAAGACTTGTACACCTGGGGTGAGCATGCCTACGGCGTCATCGAG AGTCCGACGTCGGTCCGCCGCGCCGGCGCCCGGTGCGGAAGTGCTGCTGCTCATGAGGACGGAGCGGCCACGGAG GAGCCGTCGGCCGGTGCCGAGGACAAGGCGCCGCCCGCAGAGAGCAAGACGGCGGCTTCCAAGCCCGCAGGCCAA GCCGACGGCCGGCAATGGACAAAGAATGCCGTCGCCGCCGCCGACGACGGCAGGCTGGACAAGATGCTCAGCTAC ATGAAGCTCGGCTACGGCTCGTACTGGACCCTCCCCGGGGCCACGAGCCAAGGCACGGCGTCCAGACAGCCGTCG TCCTCCCGGCGGCCGGCCCCCCCAAAGCGAACCTCATCGGCCGGACGTTTCCTCATCGGCCTCACGGGCCAGATG GAGGAGACGGATGACGATGGCGACGCAGCCTCGAGCGGCTGCTCCGAGGCCGAGCACAACTCGCGCACCGTCCTG CGCACCGTCCACGTCGAGCTCGAGAGCGACGGCACGAGGCCCGAGATGACCATGGTCAAGGACTTTGTCAACCCC GTCAGCGAGCGGCAAGTGGCCTACAGCTCGTACGACGTGAACAAGACGGACAAGCTGCGCGTCGTCATCTACGTC AACCGGCCCTTCGTCTTCGCCTTCTTCTTCCGCCTGCGCACCGATTCGCTCGCGTGGGACACGCTGTACCGCTCG CTGCACTACCAGCTGGCTCCGCTGAGGCGTCCGCTGCTGGCGTCGACGCGCTACCGTCCGCCGTCGTCGCAGCCT CCCGGCGGCCTGTACAGCCTCGTGTGGGACCCGGCTTCGCTGACGGTCCGGGCCGCCGTCCCCAACATACCGGAT CAGCAGCAGCTCCGGCTCGGCGGCGGCCACTCGTCGCTGCTCGACGCCTTTTGGTCTCGCGCCGATGCCGTCAGC ACCCATCTCCAGCTGCTGCTGTTGCAGGCCGCCACCCGCTCCGTCACCGGCACCGTCGAGCGCACTCTCAAGACG AGTCGAGGCTGGTGGATCGTGTGGACGCGTCTCGGCCATGGGGATGACGACGACGACGACGACTGCTCCGCCTCG GGCCCGGGTCTACCGGCCAAGGAGATTTTTCTCATACGCCGTGCCAGCGACCATGCCGGCGCGGCAGATGCTGTA GCCGCCGCCGGCTTGGTGCAGGGCATCGGTGTTGATACGCGCCGTTACGTCGAGGAGCTACTGAGCTTGCTGTGA |
Gene | >Ophio5|679 ATGGCCTCGGGCGCTGCCTCGTCTTCGGGGGCCGTCGTCCCCGCCCGCCTCGGCTTCCTAGCTATCTACAACCCA TCGCTGGGCAGGACGGACGAGACGATGGACGAGCAGATCGTCTACTATGCCTCGGTCACGACGCAAGCCGCCTCG TCTCATCGTCGACGCCGGCGTCGTGTCCGAGCTCGAGCTCGTCCGACGGACGGACTCACGCCCCAAGAGCGCCAT GAGCGTCTGCGTCAGATCGGCTTGGCTCAGGGCATGGTCAGCTTTGGTCGTGGCTTTGCTGATGGTGCTGCTGTC GATGCTATTGATACCGATGGCGCCCGCGTTGTCGTTCACGAGCTCGAGCCCGGTTGGTGGATCTTGGCCGTACGT CTCCAGTGGAACTAAAAGACACAAAACGAGGCTGCATCTCGAGACGTGTTGTGTTGTTGACTTCAGCTTCGAACA GAGCATCGACTTGACCAAGATGCCGCTTCCCCCGCGTCTTGTCAACTCGGCCGCCGAAGACAGTAGGTTCGAGTA TTCGTCGCGCGAGATGAAGCCGGCGTCGCTGCTCGTCGGAGATCTGCTACGGGCCCATAACATCTTTCTCATGCA CCACGGCTCCTCTCTCAGCGGCCTCTTCGTCCACTGCCGTCGGTCCAAGTTCGTCGCGCTGCTGGGACGGTATTG GGATCTGTTCCTCTCTACCTGGAACGTGCTGCTGCACGGTAACCCGGCCAGGGACATGTTCGGGGCCATCAACGT GGCCGCCTCGGGCGAGCTGGGCGTCGGCGTCGGCGAGGAGGACCGTGGTAGTGGCGAGCGCGAGGTTCTCGAGGG CTTGGTCGGTAGGATAGAGGGCCTGGTCGATCTCGTCGTCTCCAAGTTCGGCACGGATGAGGACGAGTCGGAGCA GGACGTGTCTTGGCTCGGCACCGGTCGGGAGCCCGCGGCCGATGACGGCGCCGTCTTTCTCGGTGTCGGCGCCTT GTCGAGGAAATCGTTGAGGGACGTGACGCACTGGATGGAAGACTTGTACACCTGGGGTGAGCATGCCTACGGCGT CATCGAGAGTCCGACGTCGGTCCGCCGCGCCGGCGCCCGGTGCGGAAGTGCTGCTGCTCATGAGGACGGAGCGGC CACGGAGGAGCCGTCGGCCGGTGCCGAGGACAAGGCGCCGGTGGAATCTGCAGAGAGCAAGGCGGCGGCTTNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGCAGCCCGCAGAGA GCAAGACGGCGGCTTCCAAGCCCGCAGGCCAAGCCGACGGCCGGCAATGGACAAAGAATGCCGTCGCCGCCGCCG ACGACGGCAGGCTGGACAAGATGCTCAGCTACATGAAGCTCGGCTACGGCTCGTACTGGACCCTCCCCGGGGCCA CGAGCCAAGGCACGGCGTCCAGACAGCCGTCGTCCTCCCGGCGGCCGGCCCCCCCAAAGCGAACCTCATCGGCCG GACGTTTCCTCATCGGCCTCACGGGCCAGATGGAGGAGACGGATGACGATGGCGACGCAGCCTCGAGCGGCTGCT CCGAGGCCGAGCACAACTCGCGCACCGTCCTGCGCACCGTCCACGTCGAGCTCGAGAGCGACGGCACGAGGCCCG AGATGACCATGGTCAAGGACTTTGTCAACCCCGTCAGCGAGCGGCAAGTGGCCTACAGCTCGTACGACGTGAACA AGACGGACAAGCTGCGCGTCGTCATCTACGTCAACCGGCCCTTCGTCTTCGCCTTCTTCTTCCGCCTGCGCACCG ATTCGCTCGCGTGGGACACGCTGTACCGCTCGCTGCACTACCAGCTGGCTCCGCTGAGGCGTCCGCTGCTGGCGT CGACGCGCTACCGTCCGCCGTCGTCGCAGCCTCCCGGCGGCCTGTACAGCCTCGTGTGGGACCCGGCTTCGCTGA CGGTCCGGGCCGCCGTCCCCAACATACCGGATCAGCAGCAGCTCCGGCTCGGCGGCGGCCACTCGTCGCTGCTCG ACGCCTTTTGGTCTCGCGCCGATGCCGTCAGCACCCATCTCCAGCTGCTGCTGTTGCAGGCCGCCACCCGCTCCG TCACCGGCACCGTCGAGCGCACTCTCAAGACGAGTCGAGGCTGGTGGATCGTGTGGACGCGTCTCGGCCATGGGG ATGACGACGACGACGACGACTGCTCCGCCTCGGGCCCGGGTCTACCGGCCAAGGAGATTTTTCTCATACGCCGTG CCAGCGACCATGCCGGCGCGGCAGATGCTGTAGCCGCCGCCGGCTTGGTGCAGGGCATCGGTGTTGATACGCGCC GTTACGTCGAGGAGCTACTGAGCTTGCTGTGA |