© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6768 |
| Gene name | |
| Location | scaffold_609:146..693 |
| Strand | - |
| Gene length (bp) | 547 |
| Transcript length (bp) | 429 |
| Coding sequence length (bp) | 426 |
| Protein length (aa) | 142 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 5.40 | 0.04 | 10.77 |
| CcL | In ants, during behavior modification | 3.08 | 0.00 | 7.07 |
| CcD | In ants, recently dead | 2.00 | 0.00 | 4.81 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.339661 | no |
| SC16a | CcD | 0.113680 | no |
| CcL | CcD | 0.546765 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6768 MYYLPRVYNLLVGLLVVAHWSLSLAPLPLALALALSLSLSLSGLSAGAVPPPRSGTLVPACPVAPRYRNGHPPSR QSCAPPAPGSRIDFAPPPPPPSSLAPFPRLPSKFASRLPPQILPISSRLLGLDAVALLPRSTRCFIR |
| Coding | >Ophio5|6768 ATGTACTACCTACCTAGGGTATATAATCTACTAGTAGGACTGCTAGTAGTAGCCCACTGGTCTCTCTCTCTCGCT CCCCTCCCTCTCGCTCTCGCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTGGGCTCTCAGCCGGGGCGGTGCCT CCACCCAGGTCGGGTACCCTTGTACCCGCGTGTCCAGTAGCACCGCGCTACCGCAATGGGCACCCTCCAAGCCGC CAATCATGTGCCCCCCCCGCGCCCGGCTCACGTATCGATTTCGCACCTCCACCCCCTCCACCCTCCAGCCTTGCG CCTTTCCCCCGACTGCCTTCCAAATTCGCATCTCGTCTTCCGCCACAAATTTTACCCATCAGCTCTCGACTTCTT GGACTCGACGCCGTCGCCTTGTTGCCACGCTCAACGCGCTGTTTCATTCGC |
| Transcript | >Ophio5|6768 ATGTACTACCTACCTAGGGTATATAATCTACTAGTAGGACTGCTAGTAGTAGCCCACTGGTCTCTCTCTCTCGCT CCCCTCCCTCTCGCTCTCGCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTGGGCTCTCAGCCGGGGCGGTGCCT CCACCCAGGTCGGGTACCCTTGTACCCGCGTGTCCAGTAGCACCGCGCTACCGCAATGGGCACCCTCCAAGCCGC CAATCATGTGCCCCCCCCGCGCCCGGCTCACGTATCGATTTCGCACCTCCACCCCCTCCACCCTCCAGCCTTGCG CCTTTCCCCCGACTGCCTTCCAAATTCGCATCTCGTCTTCCGCCACAAATTTTACCCATCAGCTCTCGACTTCTT GGACTCGACGCCGTCGCCTTGTTGCCACGCTCAACGCGCTGTTTCATTCGCTAA |
| Gene | >Ophio5|6768 ATGGTGCGTTACCTACACCTACCTACCTACCTACCTACCTACCAACCTCTTACCTCTATTTAGTACTACCTACCT AGGGTATATAATCTACTAGTAGGACTGCTAGTAGTAGGTAAATACCTACCTAGTAGTGGGTTGGTAGTGGTAGAT GCCGTCGTGATAAATCTCAGCCCACTGGTCTCTCTCTCTCGCTCCCCTCCCTCTCGCTCTCGCTCTCGCTCTCTC TCTCTCTCTCTCTCTCTCTGGGCTCTCAGCCGGGGCGGTGCCTCCACCCAGGTCGGGTACCCTTGTACCCGCGTG TCCAGTAGCACCGCGCTACCGCAATGGGCACCCTCCAAGCCGCCAATCATGTGCCCCCCCCGCGCCCGGCTCACG TATCGATTTCGCACCTCCACCCCCTCCACCCTCCAGCCTTGCGCCTTTCCCCCGACTGCCTTCCAAATTCGCATC TCGTCTTCCGCCACAAATTTTACCCATCAGCTCTCGACTTCTTGGACTCGACGCCGTCGCCTTGTTGCCACGCTC AACGCGCTGTTTCATTCGCTAA |