Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6768
Gene name
Locationscaffold_609:146..693
Strand-
Gene length (bp)547
Transcript length (bp)429
Coding sequence length (bp)426
Protein length (aa) 142

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 48 0.5

Transmembrane Domains

Domain # Start End Length
1 7 29 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 5.40 0.04 10.77
CcL In ants, during behavior modification 3.08 0.00 7.07
CcD In ants, recently dead 2.00 0.00 4.81

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.339661 no
SC16a CcD 0.113680 no
CcL CcD 0.546765 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6768
MYYLPRVYNLLVGLLVVAHWSLSLAPLPLALALALSLSLSLSGLSAGAVPPPRSGTLVPACPVAPRYRNGHPPSR
QSCAPPAPGSRIDFAPPPPPPSSLAPFPRLPSKFASRLPPQILPISSRLLGLDAVALLPRSTRCFIR
Coding >Ophio5|6768
ATGTACTACCTACCTAGGGTATATAATCTACTAGTAGGACTGCTAGTAGTAGCCCACTGGTCTCTCTCTCTCGCT
CCCCTCCCTCTCGCTCTCGCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTGGGCTCTCAGCCGGGGCGGTGCCT
CCACCCAGGTCGGGTACCCTTGTACCCGCGTGTCCAGTAGCACCGCGCTACCGCAATGGGCACCCTCCAAGCCGC
CAATCATGTGCCCCCCCCGCGCCCGGCTCACGTATCGATTTCGCACCTCCACCCCCTCCACCCTCCAGCCTTGCG
CCTTTCCCCCGACTGCCTTCCAAATTCGCATCTCGTCTTCCGCCACAAATTTTACCCATCAGCTCTCGACTTCTT
GGACTCGACGCCGTCGCCTTGTTGCCACGCTCAACGCGCTGTTTCATTCGC
Transcript >Ophio5|6768
ATGTACTACCTACCTAGGGTATATAATCTACTAGTAGGACTGCTAGTAGTAGCCCACTGGTCTCTCTCTCTCGCT
CCCCTCCCTCTCGCTCTCGCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTGGGCTCTCAGCCGGGGCGGTGCCT
CCACCCAGGTCGGGTACCCTTGTACCCGCGTGTCCAGTAGCACCGCGCTACCGCAATGGGCACCCTCCAAGCCGC
CAATCATGTGCCCCCCCCGCGCCCGGCTCACGTATCGATTTCGCACCTCCACCCCCTCCACCCTCCAGCCTTGCG
CCTTTCCCCCGACTGCCTTCCAAATTCGCATCTCGTCTTCCGCCACAAATTTTACCCATCAGCTCTCGACTTCTT
GGACTCGACGCCGTCGCCTTGTTGCCACGCTCAACGCGCTGTTTCATTCGCTAA
Gene >Ophio5|6768
ATGGTGCGTTACCTACACCTACCTACCTACCTACCTACCTACCAACCTCTTACCTCTATTTAGTACTACCTACCT
AGGGTATATAATCTACTAGTAGGACTGCTAGTAGTAGGTAAATACCTACCTAGTAGTGGGTTGGTAGTGGTAGAT
GCCGTCGTGATAAATCTCAGCCCACTGGTCTCTCTCTCTCGCTCCCCTCCCTCTCGCTCTCGCTCTCGCTCTCTC
TCTCTCTCTCTCTCTCTCTGGGCTCTCAGCCGGGGCGGTGCCTCCACCCAGGTCGGGTACCCTTGTACCCGCGTG
TCCAGTAGCACCGCGCTACCGCAATGGGCACCCTCCAAGCCGCCAATCATGTGCCCCCCCCGCGCCCGGCTCACG
TATCGATTTCGCACCTCCACCCCCTCCACCCTCCAGCCTTGCGCCTTTCCCCCGACTGCCTTCCAAATTCGCATC
TCGTCTTCCGCCACAAATTTTACCCATCAGCTCTCGACTTCTTGGACTCGACGCCGTCGCCTTGTTGCCACGCTC
AACGCGCTGTTTCATTCGCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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