© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|675 |
| Gene name | |
| Location | scaffold_1181:359..929 |
| Strand | + |
| Gene length (bp) | 570 |
| Transcript length (bp) | 300 |
| Coding sequence length (bp) | 297 |
| Protein length (aa) | 99 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05347 | Complex1_LYR | Complex 1 protein (LYR family) | 2.3E-11 | 5 | 63 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q945M1|NDUB9_ARATH | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=1 SV=1 | 10 | 89 | 2.0E-19 |
| sp|Q0MQE8|NDUB9_PONAB | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=NDUFB9 PE=2 SV=3 | 1 | 84 | 1.0E-12 |
| sp|Q9Y6M9|NDUB9_HUMAN | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Homo sapiens GN=NDUFB9 PE=1 SV=3 | 1 | 84 | 3.0E-12 |
| sp|Q0MQF0|NDUB9_PANTR | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pan troglodytes GN=NDUFB9 PE=2 SV=3 | 1 | 84 | 3.0E-12 |
| sp|Q0MQE9|NDUB9_GORGO | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3 | 1 | 84 | 4.0E-12 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q945M1|NDUB9_ARATH | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=1 SV=1 | 10 | 89 | 2.0E-19 |
| sp|Q0MQE8|NDUB9_PONAB | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=NDUFB9 PE=2 SV=3 | 1 | 84 | 1.0E-12 |
| sp|Q9Y6M9|NDUB9_HUMAN | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Homo sapiens GN=NDUFB9 PE=1 SV=3 | 1 | 84 | 3.0E-12 |
| sp|Q0MQF0|NDUB9_PANTR | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pan troglodytes GN=NDUFB9 PE=2 SV=3 | 1 | 84 | 3.0E-12 |
| sp|Q0MQE9|NDUB9_GORGO | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3 | 1 | 84 | 4.0E-12 |
| sp|Q9CQJ8|NDUB9_MOUSE | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3 | 1 | 84 | 6.0E-12 |
| sp|Q02369|NDUB9_BOVIN | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDUFB9 PE=1 SV=2 | 1 | 84 | 3.0E-11 |
| sp|Q54NR3|NDUB9_DICDI | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Dictyostelium discoideum GN=ndufb9 PE=3 SV=1 | 1 | 93 | 2.0E-09 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 499.00 | 271.71 | 726.28 |
| CcL | In ants, during behavior modification | 403.30 | 196.29 | 610.30 |
| CcD | In ants, recently dead | 486.16 | 256.97 | 715.35 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.398563 | no |
| SC16a | CcD | 0.927568 | no |
| CcL | CcD | 0.474222 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|675 MSTRRAALSLYRRALKLTLDWAVQRQLWRGQALYIRSLFEANRNVSDPRQQKALLSETEKLLDSWKHPDPYIPPT APGGSKFERNLTSPVLDPPAASNK |
| Coding | >Ophio5|675 ATGTCGACGCGCCGTGCGGCACTATCGCTCTACCGCCGCGCTCTCAAACTGACCTTGGACTGGGCTGTCCAGCGT CAGTTGTGGCGCGGACAAGCTCTGTACATACGATCACTCTTTGAAGCCAACCGCAATGTGTCGGACCCAAGACAG CAAAAGGCGCTTTTATCAGAGACAGAGAAATTACTTGACAGCTGGAAGCACCCAGATCCCTATATTCCCCCTACG GCTCCTGGAGGTTCTAAATTCGAGCGCAACCTGACATCACCAGTTCTCGATCCACCCGCCGCATCGAATAAA |
| Transcript | >Ophio5|675 ATGTCGACGCGCCGTGCGGCACTATCGCTCTACCGCCGCGCTCTCAAACTGACCTTGGACTGGGCTGTCCAGCGT CAGTTGTGGCGCGGACAAGCTCTGTACATACGATCACTCTTTGAAGCCAACCGCAATGTGTCGGACCCAAGACAG CAAAAGGCGCTTTTATCAGAGACAGAGAAATTACTTGACAGCTGGAAGCACCCAGATCCCTATATTCCCCCTACG GCTCCTGGAGGTTCTAAATTCGAGCGCAACCTGACATCACCAGTTCTCGATCCACCCGCCGCATCGAATAAATAG |
| Gene | >Ophio5|675 ATGTCGACGCGCCGTGCGGCACTGTCAGTCTCGCCCATGACTGTGGGCTGGCCCGCTTGCCTATCCTTTCACTAA TACGACGAAGATCGCTCTACCGCCGCGCTCTCAAACTGACCTTGGACTGGGCTGTCCAGCGTCAGTTGTGGCGCG GACAAGCTCTGTACATACGATCACTCTTTGAAGCCAACCGCAATGTGTCGGACCCAAGACAGCAAAAGGTGCTTA ACTTCTGAATGCAATAACGTTAGCTCGGTGCATGGACAGCCACATTTTTAACTTAACATGGGAGCAAACTTTAGG CGCTTTTATCAGAGACAGAGAAATTACTTGACAGCTGGAAGCACCCAGATCCCTATATTCCCCCTACGGCTCCTG GAGGTAAGGATTCCAGGACCGCATCTCAACTTGGCTGCTAGACGTGGCTGATATTGTTACCATTACAGGTTCTAA ATTCGAGCGCAACCTGACATCACCAGTTCTCGATCGTAAGACCTGTCCTTCCAGGCGATTGATGACATGGATTTG ACAATGGCATGTTGCCTCTTAGCACCCGCCGCATCGAATAAATAG |