Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|675
Gene name
Locationscaffold_1181:359..929
Strand+
Gene length (bp)570
Transcript length (bp)300
Coding sequence length (bp)297
Protein length (aa) 99

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05347 Complex1_LYR Complex 1 protein (LYR family) 2.3E-11 5 63

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q945M1|NDUB9_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=1 SV=1 10 89 2.0E-19
sp|Q0MQE8|NDUB9_PONAB NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=NDUFB9 PE=2 SV=3 1 84 1.0E-12
sp|Q9Y6M9|NDUB9_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Homo sapiens GN=NDUFB9 PE=1 SV=3 1 84 3.0E-12
sp|Q0MQF0|NDUB9_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pan troglodytes GN=NDUFB9 PE=2 SV=3 1 84 3.0E-12
sp|Q0MQE9|NDUB9_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3 1 84 4.0E-12
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q945M1|NDUB9_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=1 SV=1 10 89 2.0E-19
sp|Q0MQE8|NDUB9_PONAB NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=NDUFB9 PE=2 SV=3 1 84 1.0E-12
sp|Q9Y6M9|NDUB9_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Homo sapiens GN=NDUFB9 PE=1 SV=3 1 84 3.0E-12
sp|Q0MQF0|NDUB9_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pan troglodytes GN=NDUFB9 PE=2 SV=3 1 84 3.0E-12
sp|Q0MQE9|NDUB9_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3 1 84 4.0E-12
sp|Q9CQJ8|NDUB9_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3 1 84 6.0E-12
sp|Q02369|NDUB9_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDUFB9 PE=1 SV=2 1 84 3.0E-11
sp|Q54NR3|NDUB9_DICDI NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Dictyostelium discoideum GN=ndufb9 PE=3 SV=1 1 93 2.0E-09
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|675
MSTRRAALSLYRRALKLTLDWAVQRQLWRGQALYIRSLFEANRNVSDPRQQKALLSETEKLLDSWKHPDPYIPPT
APGGSKFERNLTSPVLDPPAASNK
Coding >Ophio5|675
ATGTCGACGCGCCGTGCGGCACTATCGCTCTACCGCCGCGCTCTCAAACTGACCTTGGACTGGGCTGTCCAGCGT
CAGTTGTGGCGCGGACAAGCTCTGTACATACGATCACTCTTTGAAGCCAACCGCAATGTGTCGGACCCAAGACAG
CAAAAGGCGCTTTTATCAGAGACAGAGAAATTACTTGACAGCTGGAAGCACCCAGATCCCTATATTCCCCCTACG
GCTCCTGGAGGTTCTAAATTCGAGCGCAACCTGACATCACCAGTTCTCGATCCACCCGCCGCATCGAATAAA
Transcript >Ophio5|675
ATGTCGACGCGCCGTGCGGCACTATCGCTCTACCGCCGCGCTCTCAAACTGACCTTGGACTGGGCTGTCCAGCGT
CAGTTGTGGCGCGGACAAGCTCTGTACATACGATCACTCTTTGAAGCCAACCGCAATGTGTCGGACCCAAGACAG
CAAAAGGCGCTTTTATCAGAGACAGAGAAATTACTTGACAGCTGGAAGCACCCAGATCCCTATATTCCCCCTACG
GCTCCTGGAGGTTCTAAATTCGAGCGCAACCTGACATCACCAGTTCTCGATCCACCCGCCGCATCGAATAAATAG
Gene >Ophio5|675
ATGTCGACGCGCCGTGCGGCACTGTCAGTCTCGCCCATGACTGTGGGCTGGCCCGCTTGCCTATCCTTTCACTAA
TACGACGAAGATCGCTCTACCGCCGCGCTCTCAAACTGACCTTGGACTGGGCTGTCCAGCGTCAGTTGTGGCGCG
GACAAGCTCTGTACATACGATCACTCTTTGAAGCCAACCGCAATGTGTCGGACCCAAGACAGCAAAAGGTGCTTA
ACTTCTGAATGCAATAACGTTAGCTCGGTGCATGGACAGCCACATTTTTAACTTAACATGGGAGCAAACTTTAGG
CGCTTTTATCAGAGACAGAGAAATTACTTGACAGCTGGAAGCACCCAGATCCCTATATTCCCCCTACGGCTCCTG
GAGGTAAGGATTCCAGGACCGCATCTCAACTTGGCTGCTAGACGTGGCTGATATTGTTACCATTACAGGTTCTAA
ATTCGAGCGCAACCTGACATCACCAGTTCTCGATCGTAAGACCTGTCCTTCCAGGCGATTGATGACATGGATTTG
ACAATGGCATGTTGCCTCTTAGCACCCGCCGCATCGAATAAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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