© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|674 |
| Gene name | |
| Location | scaffold_1180:1904..2562 |
| Strand | + |
| Gene length (bp) | 658 |
| Transcript length (bp) | 267 |
| Coding sequence length (bp) | 264 |
| Protein length (aa) | 88 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.2318 | 0.2294 | 0.2037 | 0.3658 | 0.4603 | 0.0889 | 0.625 | 0.4051 | 0.3384 | 0.004 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 36 | 58 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 8293 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps kimflemingae | Ophio5|674 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|674 MKADCCCCQAKPDFTARAPKKKDSRSTKMPFSALPWADFAIGFVLGYGVCVVMVSLVLGRQMKRLPWLWEDEVER QRHRHAAATLSEN |
| Coding | >Ophio5|674 ATGAAGGCGGACTGCTGCTGTTGTCAAGCGAAACCCGACTTCACAGCACGAGCACCCAAGAAAAAAGACAGTCGC AGTACAAAGATGCCCTTCTCAGCCCTCCCCTGGGCCGACTTCGCCATCGGCTTCGTGCTCGGATACGGCGTCTGC GTCGTCATGGTCAGCCTCGTACTCGGACGTCAGATGAAGCGACTGCCGTGGCTGTGGGAGGACGAGGTCGAGAGG CAGAGACATCGACATGCGGCGGCGACGTTGAGCGAGAAC |
| Transcript | >Ophio5|674 ATGAAGGCGGACTGCTGCTGTTGTCAAGCGAAACCCGACTTCACAGCACGAGCACCCAAGAAAAAAGACAGTCGC AGTACAAAGATGCCCTTCTCAGCCCTCCCCTGGGCCGACTTCGCCATCGGCTTCGTGCTCGGATACGGCGTCTGC GTCGTCATGGTCAGCCTCGTACTCGGACGTCAGATGAAGCGACTGCCGTGGCTGTGGGAGGACGAGGTCGAGAGG CAGAGACATCGACATGCGGCGGCGACGTTGAGCGAGAACTGA |
| Gene | >Ophio5|674 ATGAAGGCGGACTGCTGCTGTTGGTAGACAGTGAGTGAGTGAGTGAGTGACGTCGAGCCGTTTGCGTCCCAAGGC AGCCAAGAAAAAAGAGAGTGAGAGAGTGAGAGAGCGAGAGAGAGGGAAAGTACAGCTTACAAGTAGGCAGGTAGG CGACGACTGTCAGTTGGCGGCAGCCGGTGTTCCACCCGAGGCAGGTGCAAACGCCCCTTCAAAAACAGCAGAAGC GAGTTGCGCGCAAGCTTTGCAAAGACAACAGAGGCAGAGGCAGAGGCAGAAGCAGAAGCAGAAAGCAGAGGCAGA AGCAGAAGCAGAGGCAGAAGCAGAAGCGAGAGCAAGCCCTCTTGAAAAGTCCGCAGTCAAGCGAAACCCGACTTC ACAGCACGAGTGTGAAGCCCTCAAAAGCCCGACAGATGCGCGTGGAAGCGCTGACAAAAGCGAGCAGGCACCCAA GAAAAAAGACAGTCGCAGTACAAAGATGCCCTTCTCAGCCCTCCCCTGGGCCGACTTCGCCATCGGCTTCGTGCT CGGATACGGCGTCTGCGTCGTCATGGTCAGCCTCGTACTCGGACGTCAGATGAAGCGACTGCCGTGGCTGTGGGA GGACGAGGTCGAGAGGCAGAGACATCGACATGCGGCGGCGACGTTGAGCGAGAACTGA |