Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|6726
Gene name
Location	scaffold_60:41013..42665
Strand	+
Gene length (bp)	1652
Transcript length (bp)	1596
Coding sequence length (bp)	1593
Protein length (aa)	531

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04280	Tim44	Tim44-like domain	5.6E-35	372	525

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O60084\|TIM44_SCHPO	Mitochondrial import inner membrane translocase subunit tim44 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim44 PE=3 SV=1	151	526	3.0E-98
sp\|Q01852\|TIM44_YEAST	Mitochondrial import inner membrane translocase subunit TIM44 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIM44 PE=1 SV=1	151	527	3.0E-89
sp\|O35857\|TIM44_MOUSE	Mitochondrial import inner membrane translocase subunit TIM44 OS=Mus musculus GN=Timm44 PE=1 SV=2	157	526	8.0E-43
sp\|O43615\|TIM44_HUMAN	Mitochondrial import inner membrane translocase subunit TIM44 OS=Homo sapiens GN=TIMM44 PE=1 SV=2	157	526	9.0E-42
sp\|O35094\|TIM44_RAT	Mitochondrial import inner membrane translocase subunit TIM44 OS=Rattus norvegicus GN=Timm44 PE=1 SV=1	157	526	6.0E-41

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O60084\|TIM44_SCHPO	Mitochondrial import inner membrane translocase subunit tim44 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim44 PE=3 SV=1	151	526	3.0E-98
sp\|Q01852\|TIM44_YEAST	Mitochondrial import inner membrane translocase subunit TIM44 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIM44 PE=1 SV=1	151	527	3.0E-89
sp\|O35857\|TIM44_MOUSE	Mitochondrial import inner membrane translocase subunit TIM44 OS=Mus musculus GN=Timm44 PE=1 SV=2	157	526	8.0E-43
sp\|O43615\|TIM44_HUMAN	Mitochondrial import inner membrane translocase subunit TIM44 OS=Homo sapiens GN=TIMM44 PE=1 SV=2	157	526	9.0E-42
sp\|O35094\|TIM44_RAT	Mitochondrial import inner membrane translocase subunit TIM44 OS=Rattus norvegicus GN=Timm44 PE=1 SV=1	157	526	6.0E-41
sp\|O02161\|TIM44_CAEEL	Probable mitochondrial import inner membrane translocase subunit tin-44 OS=Caenorhabditis elegans GN=tin-44 PE=3 SV=1	157	524	2.0E-34
sp\|Q5XF06\|TI442_ARATH	Mitochondrial import inner membrane translocase subunit TIM44-2 OS=Arabidopsis thaliana GN=TIM44-2 PE=1 SV=1	316	527	3.0E-16
sp\|Q1PF33\|TI441_ARATH	Mitochondrial import inner membrane translocase subunit TIM44-1 OS=Arabidopsis thaliana GN=TIM44-1 PE=2 SV=1	344	527	3.0E-14

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 21	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|6726 MPSLVRSAPSTACALSRAAARPVYAYGRSPAYRRLASHLPRHRASTLLPPLLSSDALRSPLSWRQFHLSVPRCQD EAKPGSTEAPKAKTNEASKAKSDEPAPAPEGEESAKKGPEDGENENQQKTEGDETKEGDGKAEKEDLPPPPPHGD KTPWQVFMETMNSEFQRSKEWNESTKQIGAAAHQFTESESVRKAREAYERSTGAVSSTASRAMKSTAGAIGKGAA WTWDTPVMKGVRKAANVTGEAVEKATKPIRDTEAYKNVKDVIDDGSSSRYGGWVEKEERRKKRALKQAERAEGVP VPEEDANAGTNLTVHKDAAWKEAWRDFRDSNRLMQGLFSMKGKYEESENPLISTARSITDRIGGFFAENETAMVI KKFRAMDPAFQVEPFLQDLREYMLPEVLDAYVKGDTETLRLWLSAAQYSVYEALTKQYLQAGMKSDGRILDIRNV DILRARMLDPGEVPVFIITCRTQEVHVYRHAKTNELAAGMEDKVQLVTYAIGITRVAEDVNNPETRGWRMIEMQK SGRDWY
Coding	>Ophio5\|6726 ATGCCATCCTTGGTCCGAAGCGCGCCCAGCACAGCATGTGCGCTTTCGAGGGCAGCAGCCCGTCCCGTTTACGCT TATGGAAGGTCTCCCGCCTATCGTAGGTTAGCCTCACACCTCCCACGTCACCGAGCGTCAACTCTTCTCCCGCCG CTGCTATCGTCAGACGCCTTGCGATCGCCTCTCTCATGGCGACAATTCCACCTCTCCGTTCCAAGATGCCAAGAC GAGGCAAAGCCCGGATCGACCGAGGCGCCCAAGGCCAAGACCAACGAGGCGTCCAAGGCCAAGTCAGACGAGCCG GCTCCCGCGCCCGAGGGAGAGGAATCTGCGAAAAAGGGCCCCGAAGATGGCGAAAATGAAAACCAGCAGAAGACC GAGGGAGACGAGACCAAGGAAGGAGACGGGAAGGCCGAAAAAGAGGATCTGCCCCCTCCGCCGCCGCACGGCGAT AAAACGCCGTGGCAGGTGTTCATGGAAACGATGAACAGCGAGTTCCAGAGGTCCAAGGAGTGGAACGAGTCCACC AAGCAGATCGGCGCCGCGGCCCATCAGTTCACGGAGAGCGAGTCTGTGCGCAAGGCGCGCGAAGCCTACGAGCGC TCCACGGGCGCCGTGTCCTCGACGGCCTCCCGGGCCATGAAGTCGACGGCGGGTGCCATCGGAAAGGGTGCCGCC TGGACCTGGGACACTCCCGTCATGAAGGGTGTGCGCAAGGCGGCCAACGTGACGGGCGAGGCTGTCGAGAAGGCC ACCAAACCGATCCGTGACACCGAAGCGTACAAGAACGTCAAGGACGTCATCGACGACGGAAGCTCCTCGAGATAC GGTGGCTGGGTCGAGAAGGAGGAGCGGAGGAAGAAGAGGGCTCTGAAGCAGGCTGAGCGCGCCGAGGGCGTCCCT GTGCCGGAAGAGGATGCCAACGCTGGGACCAACTTGACCGTACACAAGGACGCGGCTTGGAAGGAGGCGTGGCGA GACTTCCGCGACTCCAACCGGCTGATGCAGGGCCTGTTTAGCATGAAGGGCAAATACGAGGAGTCGGAGAACCCG CTGATCTCGACGGCGCGCAGCATCACGGACCGCATCGGCGGCTTCTTTGCCGAAAACGAGACGGCCATGGTGATC AAGAAGTTCCGCGCCATGGACCCGGCCTTCCAGGTGGAGCCGTTCTTGCAAGACCTCCGCGAGTACATGCTCCCC GAGGTGCTGGACGCGTACGTCAAGGGCGACACGGAGACGCTCCGGCTATGGCTCTCTGCGGCGCAGTACTCGGTG TACGAGGCGCTGACGAAGCAGTACCTACAAGCGGGCATGAAGTCGGACGGACGGATCCTGGACATACGGAACGTG GACATATTGCGGGCGCGGATGCTGGACCCGGGCGAGGTGCCCGTCTTCATCATCACGTGCCGCACGCAGGAGGTG CACGTCTACCGCCACGCCAAGACGAACGAGCTGGCGGCGGGCATGGAGGACAAGGTGCAGCTGGTGACGTACGCC ATTGGCATCACGCGCGTGGCCGAGGACGTCAACAACCCGGAGACGCGAGGATGGCGGATGATTGAGATGCAGAAG AGCGGGAGGGACTGGTAT
Transcript	>Ophio5\|6726 ATGCCATCCTTGGTCCGAAGCGCGCCCAGCACAGCATGTGCGCTTTCGAGGGCAGCAGCCCGTCCCGTTTACGCT TATGGAAGGTCTCCCGCCTATCGTAGGTTAGCCTCACACCTCCCACGTCACCGAGCGTCAACTCTTCTCCCGCCG CTGCTATCGTCAGACGCCTTGCGATCGCCTCTCTCATGGCGACAATTCCACCTCTCCGTTCCAAGATGCCAAGAC GAGGCAAAGCCCGGATCGACCGAGGCGCCCAAGGCCAAGACCAACGAGGCGTCCAAGGCCAAGTCAGACGAGCCG GCTCCCGCGCCCGAGGGAGAGGAATCTGCGAAAAAGGGCCCCGAAGATGGCGAAAATGAAAACCAGCAGAAGACC GAGGGAGACGAGACCAAGGAAGGAGACGGGAAGGCCGAAAAAGAGGATCTGCCCCCTCCGCCGCCGCACGGCGAT AAAACGCCGTGGCAGGTGTTCATGGAAACGATGAACAGCGAGTTCCAGAGGTCCAAGGAGTGGAACGAGTCCACC AAGCAGATCGGCGCCGCGGCCCATCAGTTCACGGAGAGCGAGTCTGTGCGCAAGGCGCGCGAAGCCTACGAGCGC TCCACGGGCGCCGTGTCCTCGACGGCCTCCCGGGCCATGAAGTCGACGGCGGGTGCCATCGGAAAGGGTGCCGCC TGGACCTGGGACACTCCCGTCATGAAGGGTGTGCGCAAGGCGGCCAACGTGACGGGCGAGGCTGTCGAGAAGGCC ACCAAACCGATCCGTGACACCGAAGCGTACAAGAACGTCAAGGACGTCATCGACGACGGAAGCTCCTCGAGATAC GGTGGCTGGGTCGAGAAGGAGGAGCGGAGGAAGAAGAGGGCTCTGAAGCAGGCTGAGCGCGCCGAGGGCGTCCCT GTGCCGGAAGAGGATGCCAACGCTGGGACCAACTTGACCGTACACAAGGACGCGGCTTGGAAGGAGGCGTGGCGA GACTTCCGCGACTCCAACCGGCTGATGCAGGGCCTGTTTAGCATGAAGGGCAAATACGAGGAGTCGGAGAACCCG CTGATCTCGACGGCGCGCAGCATCACGGACCGCATCGGCGGCTTCTTTGCCGAAAACGAGACGGCCATGGTGATC AAGAAGTTCCGCGCCATGGACCCGGCCTTCCAGGTGGAGCCGTTCTTGCAAGACCTCCGCGAGTACATGCTCCCC GAGGTGCTGGACGCGTACGTCAAGGGCGACACGGAGACGCTCCGGCTATGGCTCTCTGCGGCGCAGTACTCGGTG TACGAGGCGCTGACGAAGCAGTACCTACAAGCGGGCATGAAGTCGGACGGACGGATCCTGGACATACGGAACGTG GACATATTGCGGGCGCGGATGCTGGACCCGGGCGAGGTGCCCGTCTTCATCATCACGTGCCGCACGCAGGAGGTG CACGTCTACCGCCACGCCAAGACGAACGAGCTGGCGGCGGGCATGGAGGACAAGGTGCAGCTGGTGACGTACGCC ATTGGCATCACGCGCGTGGCCGAGGACGTCAACAACCCGGAGACGCGAGGATGGCGGATGATTGAGATGCAGAAG AGCGGGAGGGACTGGTATTGA
Gene	>Ophio5\|6726 ATGCCATCCTTGGTCCGAAGCGCGCCCAGCACAGCATGTGCGCTTTCGAGGGCAGCAGCCCGTCCCGTTTACGCT TATGGAAGGTCTCCCGCCTATCGTAGGTTAGCCTCACACCTCCCACGTCACCGAGCGTCAACTCTTCTCCCGCCG CTGCTATCGTCAGACGCCTTGCGATCGCCTCTCTCATGGCGACAATTCCACCTCTCCGTTCCAAGATGCCAAGAC GAGGCAAAGCCCGGATCGACCGAGGCGCCCAAGGCCAAGACCAACGAGGCGTCCAAGGCCAAGTCAGACGAGCCG GCTCCCGCGCCCGAGGGAGAGGAATCTGCGAAAAAGGGCCCCGAAGATGGCGAAAATGAAAACCAGCAGAAGACC GAGGGAGACGAGACCAAGGAAGGAGACGGGAAGGCCGAAAAAGAGGATCTGCCCCCTCCGCCGCCGCACGGCGAT AAAACGCCGTGGCAGGTGTTCATGGAAACGATGAACAGCGAGTTCCAGAGGTCCAAGGAGTGGAACGAGTCCACC AAGCAGATCGGCGCCGCGGCCCATCAGTTCACGGAGAGCGAGTCTGTGCGCAAGGCGCGCGAAGCCTACGAGCGC TCCACGGGCGCCGTGTCCTCGACGGCCTCCCGGGCCATGAAGTCGACGGCGGGTGCCATCGGAAAGGGTGCCGCC TGGACCTGGGACACTCCCGTCATGAAGGGTGTGCGCAAGGCGGCCAACGTGACGGGCGAGGCTGTCGAGAAGGCC ACCAAACCGATCCGTGACACCGAAGCGTACAAGAACGTCAAGGACGTCATCGACGACGGAAGCTCCTCGAGATAC GGTGGCTGGGTCGAGAAGGAGGAGCGGAGGAAGAAGAGGGCTCTGAAGCAGGCTGAGCGCGCCGAGGGCGTCCCT GTGCCGGAAGAGGATGCCAAGTCAGTCAGCGATTCCCGTTGGCCGAGTAAGACGCGCCGCTGACGAAGAATAACA GCGCTGGGACCAACTTGACCGTACACAAGGACGCGGCTTGGAAGGAGGCGTGGCGAGACTTCCGCGACTCCAACC GGCTGATGCAGGGCCTGTTTAGCATGAAGGGCAAATACGAGGAGTCGGAGAACCCGCTGATCTCGACGGCGCGCA GCATCACGGACCGCATCGGCGGCTTCTTTGCCGAAAACGAGACGGCCATGGTGATCAAGAAGTTCCGCGCCATGG ACCCGGCCTTCCAGGTGGAGCCGTTCTTGCAAGACCTCCGCGAGTACATGCTCCCCGAGGTGCTGGACGCGTACG TCAAGGGCGACACGGAGACGCTCCGGCTATGGCTCTCTGCGGCGCAGTACTCGGTGTACGAGGCGCTGACGAAGC AGTACCTACAAGCGGGCATGAAGTCGGACGGACGGATCCTGGACATACGGAACGTGGACATATTGCGGGCGCGGA TGCTGGACCCGGGCGAGGTGCCCGTCTTCATCATCACGTGCCGCACGCAGGAGGTGCACGTCTACCGCCACGCCA AGACGAACGAGCTGGCGGCGGGCATGGAGGACAAGGTGCAGCTGGTGACGTACGCCATTGGCATCACGCGCGTGG CCGAGGACGTCAACAACCCGGAGACGCGAGGATGGCGGATGATTGAGATGCAGAAGAGCGGGAGGGACTGGTATT GA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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