Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6704
Gene name
Locationscaffold_6:92553..93169
Strand-
Gene length (bp)616
Transcript length (bp)555
Coding sequence length (bp)552
Protein length (aa) 184

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03067 LPMO_10 Lytic polysaccharide mono-oxygenase, cellulose-degrading 1.8E-06 18 180

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6704
MKYTLITIAAYAAAVAGHGIVTSPPPRGTGPEMEKTCGKAAIDAVGKDPTIPLENFQSPPAECNVFLCRGAKFED
NQANVQNFKPNQTVNFKVDLPIPHEGPANVSIVDTARNKVIGDPLIFFDSYADEKLPQLPANNTDFNVTMPQLKQ
GQCSKPGACVLQWFWFGTEAKQTYESCVDFVMDE
Coding >Ophio5|6704
ATGAAGTATACTTTAATCACCATTGCGGCCTACGCAGCCGCCGTGGCTGGCCACGGAATCGTCACCTCTCCTCCG
CCTCGAGGGACGGGACCCGAGATGGAAAAGACATGTGGGAAGGCCGCCATCGACGCCGTCGGAAAAGACCCTACG
ATTCCCCTGGAGAACTTCCAGAGTCCCCCTGCAGAGTGCAACGTTTTTCTCTGCCGCGGCGCAAAGTTCGAAGAC
AACCAAGCCAACGTGCAGAACTTCAAGCCGAACCAGACAGTCAACTTCAAAGTCGACCTCCCGATTCCTCACGAG
GGACCAGCCAACGTTTCCATAGTAGATACGGCGAGGAACAAGGTGATTGGCGATCCGCTCATCTTCTTCGACTCG
TACGCAGATGAGAAGCTGCCGCAGCTGCCGGCGAATAACACTGACTTCAACGTCACCATGCCTCAGCTGAAGCAG
GGACAGTGCTCCAAGCCTGGTGCTTGCGTGCTGCAGTGGTTCTGGTTCGGGACCGAGGCGAAGCAGACGTATGAG
AGCTGCGTCGACTTTGTTATGGATGAG
Transcript >Ophio5|6704
ATGAAGTATACTTTAATCACCATTGCGGCCTACGCAGCCGCCGTGGCTGGCCACGGAATCGTCACCTCTCCTCCG
CCTCGAGGGACGGGACCCGAGATGGAAAAGACATGTGGGAAGGCCGCCATCGACGCCGTCGGAAAAGACCCTACG
ATTCCCCTGGAGAACTTCCAGAGTCCCCCTGCAGAGTGCAACGTTTTTCTCTGCCGCGGCGCAAAGTTCGAAGAC
AACCAAGCCAACGTGCAGAACTTCAAGCCGAACCAGACAGTCAACTTCAAAGTCGACCTCCCGATTCCTCACGAG
GGACCAGCCAACGTTTCCATAGTAGATACGGCGAGGAACAAGGTGATTGGCGATCCGCTCATCTTCTTCGACTCG
TACGCAGATGAGAAGCTGCCGCAGCTGCCGGCGAATAACACTGACTTCAACGTCACCATGCCTCAGCTGAAGCAG
GGACAGTGCTCCAAGCCTGGTGCTTGCGTGCTGCAGTGGTTCTGGTTCGGGACCGAGGCGAAGCAGACGTATGAG
AGCTGCGTCGACTTTGTTATGGATGAGTAG
Gene >Ophio5|6704
ATGAAGTATACTTTAATCACCATTGCGGCCTACGCAGCCGCCGTGGCTGGCCACGGAATCGTCACCTCTCCTCCG
CCTCGAGGGACGGGACCCGAGATGGAAAAGACATGTGGGAAGGCCGCCATCGACGCCGTCGGAAAAGACCCTACG
ATTCCCCTGGAGAACTTCCAGAGTCCCCCTGCAGAGTGTTAGTAGCCGAGTGCAGCAGGATCATGTCACCTTTCC
CCTCTTCTGACAGAAACATGCAGGCAACGTTTTTCTCTGCCGCGGCGCAAAGTTCGAAGACAACCAAGCCAACGT
GCAGAACTTCAAGCCGAACCAGACAGTCAACTTCAAAGTCGACCTCCCGATTCCTCACGAGGGACCAGCCAACGT
TTCCATAGTAGATACGGCGAGGAACAAGGTGATTGGCGATCCGCTCATCTTCTTCGACTCGTACGCAGATGAGAA
GCTGCCGCAGCTGCCGGCGAATAACACTGACTTCAACGTCACCATGCCTCAGCTGAAGCAGGGACAGTGCTCCAA
GCCTGGTGCTTGCGTGCTGCAGTGGTTCTGGTTCGGGACCGAGGCGAAGCAGACGTATGAGAGCTGCGTCGACTT
TGTTATGGATGAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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