© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6686 |
| Gene name | |
| Location | scaffold_6:54199..55607 |
| Strand | - |
| Gene length (bp) | 1408 |
| Transcript length (bp) | 1284 |
| Coding sequence length (bp) | 1281 |
| Protein length (aa) | 427 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12697 | Abhydrolase_6 | Alpha/beta hydrolase family | 1.2E-06 | 131 | 402 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 58 | 0.5 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 0.54 | 0.00 | 1.20 |
| CcL | In ants, during behavior modification | 5.48 | 0.27 | 10.68 |
| CcD | In ants, recently dead | 2.58 | 0.45 | 4.70 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.001437 | yes |
| SC16a | CcD | 0.011654 | yes |
| CcL | CcD | 0.113857 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6686 MSSRESVVTSSTRVVPINRLLHAPCTHVVHTRSRLSSISAHMFAPAILLALAVTAAARNCIDITVPVKLRARNVY YDVEPPKNEIDLVNFILDFSRRQPVLPRTLAKEPKVYRLATTYCWPDSGPGQRLQILTHGIGFDRNYWDWHNGRP DNGYRYSYVNHALARGYSTLSWDRLGIGASSHGDPINEMQLFLEMDALLALTGWVRRGGLPDRQHQRSKFVHVGH SYGSALTTVVTTENPAMTDCVVLTGFSQVYKFLPTFILASNLVSVKELPGLAKHYENGYVAPNSGIGIQTNFFAP HNFDPAVLQAATEKRQPASLGELMTLNYVNNKSKFPGPVLLITGDRDIPFCGGNCSNTPYFNVKARNLLESSRPN FASSSVFETVALHKAGHALNLEYTAPVAYKIILDFTDKHLSSQGYTPMSPYA |
| Coding | >Ophio5|6686 ATGTCCTCACGCGAGTCTGTTGTGACGTCCAGCACGCGCGTCGTCCCCATCAATCGTCTACTTCATGCTCCCTGC ACCCATGTCGTCCACACACGTTCGCGACTTTCCTCCATCTCTGCTCACATGTTCGCGCCGGCTATCCTCCTTGCC CTTGCTGTGACGGCCGCAGCAAGGAACTGCATCGACATTACGGTTCCTGTTAAGCTACGGGCGCGAAATGTCTAC TACGATGTCGAGCCGCCTAAGAACGAGATCGACTTGGTTAACTTCATCCTTGACTTCAGCAGAAGACAACCCGTT TTGCCTCGCACACTGGCCAAGGAGCCCAAGGTGTATCGACTCGCCACCACTTACTGCTGGCCTGACTCCGGTCCT GGCCAACGGCTCCAGATCCTCACACATGGAATCGGCTTCGACCGAAATTATTGGGATTGGCACAACGGACGGCCA GATAATGGCTACAGGTACAGCTACGTGAATCACGCGCTGGCCCGGGGCTACTCGACTCTCTCTTGGGATCGTCTG GGCATCGGCGCTTCTTCACACGGCGATCCCATCAACGAGATGCAGCTCTTCCTCGAGATGGACGCCCTGCTGGCC CTGACAGGCTGGGTCCGCCGGGGCGGCTTGCCCGACCGGCAGCATCAACGGAGCAAATTCGTTCACGTGGGACAT AGTTACGGCTCGGCTTTGACAACTGTCGTGACAACTGAGAACCCCGCAATGACGGATTGCGTCGTTTTGACGGGC TTCAGCCAGGTTTACAAGTTTCTCCCCACCTTCATCCTCGCCTCGAACCTGGTTTCCGTCAAAGAGCTGCCCGGC CTGGCTAAACACTACGAAAATGGCTACGTGGCCCCAAATTCCGGCATCGGCATCCAGACCAATTTCTTTGCTCCT CACAACTTCGACCCGGCCGTACTGCAGGCCGCTACCGAGAAGCGCCAGCCGGCGTCCCTGGGGGAGCTCATGACG TTAAATTACGTCAACAATAAGAGCAAGTTCCCAGGTCCTGTCCTTTTGATCACCGGAGATCGAGATATCCCCTTT TGCGGAGGAAACTGTTCCAACACGCCGTACTTTAATGTCAAGGCCCGCAACCTTCTCGAATCATCGCGGCCTAAC TTTGCCTCGTCGAGCGTCTTCGAAACCGTGGCTTTGCACAAAGCTGGTCATGCCCTTAACCTGGAATACACGGCG CCAGTCGCCTACAAGATCATCCTGGATTTCACAGACAAACACCTGTCGTCTCAAGGGTATACGCCCATGAGTCCT TACGCC |
| Transcript | >Ophio5|6686 ATGTCCTCACGCGAGTCTGTTGTGACGTCCAGCACGCGCGTCGTCCCCATCAATCGTCTACTTCATGCTCCCTGC ACCCATGTCGTCCACACACGTTCGCGACTTTCCTCCATCTCTGCTCACATGTTCGCGCCGGCTATCCTCCTTGCC CTTGCTGTGACGGCCGCAGCAAGGAACTGCATCGACATTACGGTTCCTGTTAAGCTACGGGCGCGAAATGTCTAC TACGATGTCGAGCCGCCTAAGAACGAGATCGACTTGGTTAACTTCATCCTTGACTTCAGCAGAAGACAACCCGTT TTGCCTCGCACACTGGCCAAGGAGCCCAAGGTGTATCGACTCGCCACCACTTACTGCTGGCCTGACTCCGGTCCT GGCCAACGGCTCCAGATCCTCACACATGGAATCGGCTTCGACCGAAATTATTGGGATTGGCACAACGGACGGCCA GATAATGGCTACAGGTACAGCTACGTGAATCACGCGCTGGCCCGGGGCTACTCGACTCTCTCTTGGGATCGTCTG GGCATCGGCGCTTCTTCACACGGCGATCCCATCAACGAGATGCAGCTCTTCCTCGAGATGGACGCCCTGCTGGCC CTGACAGGCTGGGTCCGCCGGGGCGGCTTGCCCGACCGGCAGCATCAACGGAGCAAATTCGTTCACGTGGGACAT AGTTACGGCTCGGCTTTGACAACTGTCGTGACAACTGAGAACCCCGCAATGACGGATTGCGTCGTTTTGACGGGC TTCAGCCAGGTTTACAAGTTTCTCCCCACCTTCATCCTCGCCTCGAACCTGGTTTCCGTCAAAGAGCTGCCCGGC CTGGCTAAACACTACGAAAATGGCTACGTGGCCCCAAATTCCGGCATCGGCATCCAGACCAATTTCTTTGCTCCT CACAACTTCGACCCGGCCGTACTGCAGGCCGCTACCGAGAAGCGCCAGCCGGCGTCCCTGGGGGAGCTCATGACG TTAAATTACGTCAACAATAAGAGCAAGTTCCCAGGTCCTGTCCTTTTGATCACCGGAGATCGAGATATCCCCTTT TGCGGAGGAAACTGTTCCAACACGCCGTACTTTAATGTCAAGGCCCGCAACCTTCTCGAATCATCGCGGCCTAAC TTTGCCTCGTCGAGCGTCTTCGAAACCGTGGCTTTGCACAAAGCTGGTCATGCCCTTAACCTGGAATACACGGCG CCAGTCGCCTACAAGATCATCCTGGATTTCACAGACAAACACCTGTCGTCTCAAGGGTATACGCCCATGAGTCCT TACGCCTAG |
| Gene | >Ophio5|6686 ATGTCCTCACGCGAGTCTGTTGTGACGTCCAGCACGCGCGTCGTCCCCATCAATCGTCTACTTCATGCTCCCTGC ACCCATGTCGTCCACACACGTTCGCGACTTTCCTCCATCTCTGCTCACATGTTCGCGCCGGCTATCCTCCTTGCC CTTGCTGTGACGGCCGCAGCAAGGAACTGCATCGACATTACGGTTCCTGTTAAGCTACGGGCGCGAAATGTCTAC TACGATGTCGAGCCGCCTAAGAACGAGATCGACTTGGTTAACTTCATCCTTGACTTCAGCAGAAGACAACCCGTT TTGCCTCGCACACTGGCCAAGGAGGTGAGTCCCGTACAGGAGGAAGCCATCCTACATATCCTACTTCACCAGCTA ACAGAGCCCTCGTCTTACAGCCCAAGGTGTATCGACTCGCCACCACTTACTGCTGGCCTGACTCCGGTCCTGGCC AACGGCTCCAGATCCTCACACATGGAATCGGCTTCGACCGAAATTATTGGGATTGGCACAACGGACGGCCAGATA ATGGCTACAGGTACAGCTACGTGAATCACGCGCTGGCCCGGGGCTACTCGACTCTCTCTTGGGATCGTCTGGGCA TCGGCGCTTCTTCACACGGCGATCCCATCAACGAGATGCAGCTCTTCCTCGAGATGGACGCCCTGCTGGCCCTGA CAGGCTGGGTCCGCCGGGGCGGCTTGCCCGACCGGCAGCATCAACGGAGCAAATTCGTTCACGTGGGACATAGTT ACGGCTCGGCTTTGACAACTGTCGTGACAACTGAGAACCCCGCAATGACGGATTGCGTCGTTTTGACGGGCTTCA GCCAGGTTTACAAGTTTCTCCCCACCTTCATCCTCGCCTCGAACCTGGTTTCCGTCAAAGAGCTGCCCGGCCTGG CTAAACACTACGAAAATGGCTACGTGGCCCCAAATTCCGGCATCGGCATCCAGACCAATTTCTTTGCTCCTCACA ACTTCGACCCGGCCGTACTGCAGGCCGCTACCGAGAAGCGCCAGCCGGCGTCCCTGGGGGAGCTCATGACGTTAA ATTACGTCAACAATAAGAGCAAGTTCCCAGGTCCTGTCCTTTTGATCACCGGAGGCGAGTCTTCGTCCCCTGAGC GTGTCTGTAACTAGCTGATCCTTGCCCGTCAGATCGAGATATCCCCTTTTGCGGAGGAAACTGTTCCAACACGCC GTACTTTAATGTCAAGGCCCGCAACCTTCTCGAATCATCGCGGCCTAACTTTGCCTCGTCGAGCGTCTTCGAAAC CGTGGCTTTGCACAAAGCTGGTCATGCCCTTAACCTGGAATACACGGCGCCAGTCGCCTACAAGATCATCCTGGA TTTCACAGACAAACACCTGTCGTCTCAAGGGTATACGCCCATGAGTCCTTACGCCTAG |