© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6674 |
| Gene name | |
| Location | scaffold_6:25218..26944 |
| Strand | + |
| Gene length (bp) | 1726 |
| Transcript length (bp) | 1314 |
| Coding sequence length (bp) | 1311 |
| Protein length (aa) | 437 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03824 | NicO | High-affinity nickel-transport protein | 1.1E-08 | 156 | 193 |
| PF03824 | NicO | High-affinity nickel-transport protein | 6.6E-35 | 210 | 388 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74869|NIC1_SCHPO | High-affinity nickel transport protein nic1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nic1 PE=3 SV=3 | 118 | 434 | 9.0E-58 |
| sp|P23516|HOXN_CUPNH | High-affinity nickel transport protein OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hoxN PE=1 SV=3 | 216 | 404 | 9.0E-34 |
| sp|Q45247|HUPN_BRADU | Hydrogenase nickel incorporation protein HupN OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN=hupN PE=3 SV=1 | 229 | 393 | 3.0E-30 |
| sp|Q9ZM74|NIXA_HELPJ | High-affinity nickel-transport protein NixA OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=nixA PE=3 SV=1 | 203 | 393 | 2.0E-21 |
| sp|Q48262|NIXA_HELPY | High-affinity nickel-transport protein NixA OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=nixA PE=1 SV=2 | 203 | 393 | 7.0E-21 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74869|NIC1_SCHPO | High-affinity nickel transport protein nic1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nic1 PE=3 SV=3 | 118 | 434 | 9.0E-58 |
| sp|P23516|HOXN_CUPNH | High-affinity nickel transport protein OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hoxN PE=1 SV=3 | 216 | 404 | 9.0E-34 |
| sp|Q45247|HUPN_BRADU | Hydrogenase nickel incorporation protein HupN OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN=hupN PE=3 SV=1 | 229 | 393 | 3.0E-30 |
| sp|Q9ZM74|NIXA_HELPJ | High-affinity nickel-transport protein NixA OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=nixA PE=3 SV=1 | 203 | 393 | 2.0E-21 |
| sp|Q48262|NIXA_HELPY | High-affinity nickel-transport protein NixA OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=nixA PE=1 SV=2 | 203 | 393 | 7.0E-21 |
| sp|P96454|NHLF_RHORH | Cobalt transport protein NhlF OS=Rhodococcus rhodochrous GN=nhlF PE=1 SV=1 | 193 | 383 | 7.0E-12 |
| sp|P23516|HOXN_CUPNH | High-affinity nickel transport protein OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hoxN PE=1 SV=3 | 140 | 193 | 3.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005887 | integral component of plasma membrane | Yes |
| GO:0035444 | nickel cation transmembrane transport | Yes |
| GO:0015099 | nickel cation transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | No |
| GO:0008150 | biological_process | No |
| GO:0005215 | transporter activity | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| GO:0016021 | integral component of membrane | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0046915 | transition metal ion transmembrane transporter activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0000041 | transition metal ion transport | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0030001 | metal ion transport | No |
| GO:0005575 | cellular_component | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0015675 | nickel cation transport | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0006812 | cation transport | No |
| GO:0006811 | ion transport | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0031226 | intrinsic component of plasma membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 125 | 147 | 22 |
| 2 | 249 | 271 | 22 |
| 3 | 281 | 300 | 19 |
| 4 | 321 | 343 | 22 |
| 5 | 370 | 392 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6674 MKSSKLLLFCTGALLVLLHASTASLQRYTKKRHEHNQHEQQQHRCLPKVASRLQVAPDETPSRPPRAVPYLSKPG ATMTRYQCALSRPMAKAEAKLDSSTYPLATMERLSRATDRLGLSALPGRSVVVIASVALVNGIVWAAAGIVLRFH PVLAPTALLCYTLGLRHGLDADHISAIDLVTRRLIAEGRRPATVVRRYFYCCVWAAADDNDNDDDEEEAQAATMP RGFGLVARFTSFLYKSIDRPWKMFPLGLVFGLGFDTSSEVALLGIASVHAAEGTSIWLILVFPVLFTAGMCLVDS ADGALMMGLYTSKAFARDDLAILYYSIVLTSLTIAVSFFIGVIQVLSLAQNVAHPQGPFWDGVTAVTDRFDAIGG GICALFVVVGLASVIAYRPWRKHIDRRQRGLSATAEESLPETDGRPSPSQEVLSQGLGERGG |
| Coding | >Ophio5|6674 ATGAAGAGCTCCAAGCTTCTACTATTTTGCACCGGCGCCTTGCTCGTCCTGCTACATGCTTCTACCGCTTCTCTG CAGCGTTACACCAAAAAGCGTCACGAGCACAATCAACACGAACAACAACAACATCGATGCCTGCCCAAAGTTGCC TCCCGCCTCCAGGTTGCCCCCGACGAGACGCCCTCGCGTCCGCCGAGAGCCGTGCCCTATCTCTCCAAACCCGGT GCTACCATGACCCGATACCAATGCGCCTTATCCAGACCAATGGCGAAAGCCGAGGCAAAGCTTGACAGCAGCACA TATCCCCTCGCCACCATGGAACGCCTCAGCCGGGCCACAGATCGCCTCGGGCTCTCCGCCCTCCCTGGGCGCAGT GTCGTCGTCATCGCCAGCGTTGCCCTGGTCAACGGTATTGTCTGGGCGGCTGCAGGCATCGTACTGCGCTTTCAC CCGGTCTTGGCGCCGACGGCCTTGCTTTGCTATACCCTGGGACTGAGACATGGCCTCGACGCAGATCACATTTCT GCCATTGACTTGGTCACGCGACGTCTCATCGCAGAGGGCCGTCGTCCAGCTACAGTTGTGCGGCGGTACTTTTAC TGCTGTGTTTGGGCCGCTGCCGACGACAACGACAATGATGACGATGAGGAGGAAGCTCAAGCCGCGACGATGCCT CGCGGCTTCGGGCTCGTTGCCCGTTTCACCAGCTTCCTGTATAAGTCCATTGATAGGCCGTGGAAGATGTTTCCG CTCGGCCTTGTCTTCGGCCTCGGCTTCGACACCTCGTCCGAGGTTGCTCTCCTTGGGATTGCCAGCGTTCATGCC GCCGAAGGCACCAGCATCTGGCTCATCCTCGTCTTTCCCGTGCTCTTCACCGCAGGCATGTGTCTCGTCGACAGC GCCGATGGAGCTTTGATGATGGGCCTATACACGTCCAAAGCATTCGCTCGCGATGACCTCGCCATCCTTTACTAC TCAATCGTCCTCACCTCCCTGACAATCGCCGTCTCCTTCTTCATCGGTGTCATCCAAGTACTTTCTCTCGCGCAA AACGTCGCTCACCCGCAAGGTCCCTTCTGGGACGGCGTTACGGCTGTGACGGACCGCTTCGATGCCATTGGTGGT GGCATCTGTGCTCTCTTCGTCGTCGTCGGGCTCGCTTCCGTCATCGCCTACCGCCCGTGGCGCAAGCACATCGAT CGGAGACAAAGGGGCCTCTCCGCTACTGCCGAGGAGAGCCTGCCAGAGACGGATGGGCGGCCATCTCCGTCACAG GAGGTGCTGTCCCAAGGATTGGGGGAAAGGGGAGGC |
| Transcript | >Ophio5|6674 ATGAAGAGCTCCAAGCTTCTACTATTTTGCACCGGCGCCTTGCTCGTCCTGCTACATGCTTCTACCGCTTCTCTG CAGCGTTACACCAAAAAGCGTCACGAGCACAATCAACACGAACAACAACAACATCGATGCCTGCCCAAAGTTGCC TCCCGCCTCCAGGTTGCCCCCGACGAGACGCCCTCGCGTCCGCCGAGAGCCGTGCCCTATCTCTCCAAACCCGGT GCTACCATGACCCGATACCAATGCGCCTTATCCAGACCAATGGCGAAAGCCGAGGCAAAGCTTGACAGCAGCACA TATCCCCTCGCCACCATGGAACGCCTCAGCCGGGCCACAGATCGCCTCGGGCTCTCCGCCCTCCCTGGGCGCAGT GTCGTCGTCATCGCCAGCGTTGCCCTGGTCAACGGTATTGTCTGGGCGGCTGCAGGCATCGTACTGCGCTTTCAC CCGGTCTTGGCGCCGACGGCCTTGCTTTGCTATACCCTGGGACTGAGACATGGCCTCGACGCAGATCACATTTCT GCCATTGACTTGGTCACGCGACGTCTCATCGCAGAGGGCCGTCGTCCAGCTACAGTTGTGCGGCGGTACTTTTAC TGCTGTGTTTGGGCCGCTGCCGACGACAACGACAATGATGACGATGAGGAGGAAGCTCAAGCCGCGACGATGCCT CGCGGCTTCGGGCTCGTTGCCCGTTTCACCAGCTTCCTGTATAAGTCCATTGATAGGCCGTGGAAGATGTTTCCG CTCGGCCTTGTCTTCGGCCTCGGCTTCGACACCTCGTCCGAGGTTGCTCTCCTTGGGATTGCCAGCGTTCATGCC GCCGAAGGCACCAGCATCTGGCTCATCCTCGTCTTTCCCGTGCTCTTCACCGCAGGCATGTGTCTCGTCGACAGC GCCGATGGAGCTTTGATGATGGGCCTATACACGTCCAAAGCATTCGCTCGCGATGACCTCGCCATCCTTTACTAC TCAATCGTCCTCACCTCCCTGACAATCGCCGTCTCCTTCTTCATCGGTGTCATCCAAGTACTTTCTCTCGCGCAA AACGTCGCTCACCCGCAAGGTCCCTTCTGGGACGGCGTTACGGCTGTGACGGACCGCTTCGATGCCATTGGTGGT GGCATCTGTGCTCTCTTCGTCGTCGTCGGGCTCGCTTCCGTCATCGCCTACCGCCCGTGGCGCAAGCACATCGAT CGGAGACAAAGGGGCCTCTCCGCTACTGCCGAGGAGAGCCTGCCAGAGACGGATGGGCGGCCATCTCCGTCACAG GAGGTGCTGTCCCAAGGATTGGGGGAAAGGGGAGGCTAG |
| Gene | >Ophio5|6674 ATGAAGAGCTCCAAGCTTCTACTATTTTGCACCGGCGCCTTGCTCGTCCTGCTACATGCTTCTACCGCTTCTCTG CAGCGTTACACCAAAAAGCGTCACGAGCACAATCAACACGAACAACAACAACATCGATGCCTGCCCAAAGTTGCC TCCCGCCTCCAGGTTGCCCCCGACGAGACGCCCTCGCGTCCGCCGAGAGCCGTGCCCTATCTCTCCAAACCCGGT GCTACCATGACCCGATACCAATGCGCCTTATCCAGACCAATGGCGGTGTGAGGGAAAAGTGAGGGGGTAGCGGCA AGTCTCCATATAGCGGACCTGGCAGAAAGCCGAGGCAAAGCTTGACAGCAGCACATATCCCCTCGCCACCATGGA ACGCCTCAGCCGGGCCACAGATCGCCTCGGGCTCTCCGCCCTCCCTGGGCGCAGTGTCGTCGTCATCGCCAGCGT TGCCCTGGTCAACGGTATTGTCTGGGCGGCTGCAGGCATCGTACTGCGCTTTCACCCGGTCTTGGCGCCGACGGC CTTGCTTTGCTATACCCTGGGACTGAGACATGGCCTCGACGCAGATCACATTTCTGCCATTGACTTGGTCACGCG ACGTCTCATCGCAGAGGGCCGTCGTCCAGCTACAGTTGGTACATTTTTCTCGCTGGGCCATGCCACCATTGTCAT CGTCACTTGCATCGCCGTCGCGGCTACCAGCGGCGCGTTGCGCGATCGATTTGATGGCTTCGCTCGTGTTGGTGG CGTCATTGGAACGGCTGTCAGTGCGGCGGTACTTTTACTGCTGTGTTTGGGTAACGGTTGGGTTCTGTGGCGGCT TGTCGTCCGACTGCGCGCTGTGCTTGCTCGGCGCCGGCTTACGCTCCATCAGGCCGCTGCCGACGACAACGACAA TGATGACGATGAGGAGGAAGCTCAAGCCGCGACGATGCCTCGCGGCTTCGGGCTCGTTGCCCGTTTCACCAGCTT CCTGTATAAGTCCATTGATAGGCCGTGGAAGATGTTTCCGCTCGGCCTTGTCTTCGGCCTCGGCTTCGACACCTC GTCCGAGGTTGCTCTCCTTGGGATTGCCAGCGTTCATGCCGCCGAAGGCACCAGCATCTGGCTCATCCTCGTCTT TCCCGTGCTCTTCACCGGTATGGACCTGCCCGGCAATAGGTCGCTCACCTTACAGCAGTGGGACCGTAAGACAAG TGCTTTGGGGGCTAAAGACTAATCGAACCTTGCAGCAGGCATGTGTCTCGTCGACAGCGCCGATGGAGCTTTGAT GATGGGTATCACAACCACCCCCTGCTGCCACAGCGAGGACCATTCTGACATGTCCCAAGGCCTATACACGTCCAA AGCATTCGCTCGCGATGACCTCGCCATCCTTTACTACTCAATCGTCCTCACCTCCCTGACAATCGCCGTCTCCTT CTTCATCGGTGTCATCCAAGTACTTTCTCTCGCGCAAAACGTCGCTCACCCGCAAGGTCCCTTCTGGGACGGCGT TACGGCTGTGACGGACCGCTTCGATGCCATTGGTGGTGGCATCTGTGCTCTCTTCGTCGTCGTCGGGCTCGCTTC CGTCATCGCCTACCGCCCGTGGCGCAAGCACATCGATCGGAGACAAAGGGGCCTCTCCGCTACTGCCGAGGAGAG CCTGCCAGAGACGGATGGGCGGCCATCTCCGTCACAGGAGGTGCTGTCCCAAGGATTGGGGGAAAGGGGAGGCTA G |