Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6659
Gene name
Locationscaffold_599:1262..1580
Strand+
Gene length (bp)318
Transcript length (bp)318
Coding sequence length (bp)315
Protein length (aa) 105

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.61 0.0 1.99
CcL In ants, during behavior modification 4.31 0.0 9.74
CcD In ants, recently dead 1.19 0.0 3.06

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.380710 no
SC16a CcD 1.000000 no
CcL CcD 0.225339 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6659
MQLKQVLVAALFSMGSVTAIPHSNPDNVEVVARDVNDFNVKARSPDNDGLNARDTAKTAATAGTAKESWHRHHRC
DDDWYDWEGRCCRWHSWRREYYGCRDYWWD
Coding >Ophio5|6659
ATGCAACTCAAGCAAGTCCTTGTCGCCGCTCTCTTCTCTATGGGCTCTGTCACGGCCATCCCCCACTCCAACCCG
GACAATGTCGAAGTGGTGGCTCGGGATGTGAACGACTTTAATGTGAAAGCGAGGAGCCCTGACAATGATGGGCTG
AATGCCAGAGATACCGCCAAAACAGCTGCCACAGCTGGCACCGCCAAGGAATCTTGGCACCGCCATCATCGCTGC
GATGATGACTGGTACGATTGGGAGGGCCGATGCTGCAGATGGCACTCTTGGCGTCGCGAGTACTACGGTTGCCGT
GACTATTGGTGGGAC
Transcript >Ophio5|6659
ATGCAACTCAAGCAAGTCCTTGTCGCCGCTCTCTTCTCTATGGGCTCTGTCACGGCCATCCCCCACTCCAACCCG
GACAATGTCGAAGTGGTGGCTCGGGATGTGAACGACTTTAATGTGAAAGCGAGGAGCCCTGACAATGATGGGCTG
AATGCCAGAGATACCGCCAAAACAGCTGCCACAGCTGGCACCGCCAAGGAATCTTGGCACCGCCATCATCGCTGC
GATGATGACTGGTACGATTGGGAGGGCCGATGCTGCAGATGGCACTCTTGGCGTCGCGAGTACTACGGTTGCCGT
GACTATTGGTGGGACTGA
Gene >Ophio5|6659
ATGCAACTCAAGCAAGTCCTTGTCGCCGCTCTCTTCTCTATGGGCTCTGTCACGGCCATCCCCCACTCCAACCCG
GACAATGTCGAAGTGGTGGCTCGGGATGTGAACGACTTTAATGTGAAAGCGAGGAGCCCTGACAATGATGGGCTG
AATGCCAGAGATACCGCCAAAACAGCTGCCACAGCTGGCACCGCCAAGGAATCTTGGCACCGCCATCATCGCTGC
GATGATGACTGGTACGATTGGGAGGGCCGATGCTGCAGATGGCACTCTTGGCGTCGCGAGTACTACGGTTGCCGT
GACTATTGGTGGGACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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