Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|6639
Gene name
Location	scaffold_594:5495..6163
Strand	+
Gene length (bp)	668
Transcript length (bp)	603
Coding sequence length (bp)	600
Protein length (aa)	200

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04892	VanZ	VanZ like family	6.1E-07	34	110

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O13689\|YDYA_SCHPO	Uncharacterized protein C11E3.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11E3.10 PE=4 SV=2	3	129	1.0E-24

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 22	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	7	26	19
2	36	53	17
3	60	79	19
4	94	111	17

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|6639 MRIRLPFAGGFLLLLLAAAYAGLSTLQLGNFVNDKVLHTVTFFLLTVVFYWIVDTNRRRTLNMTLVVCTLILGVG SEFVQSFLPNDRDFDLYDIVANVVGSLAGLGLCSWYHRRMLERRRKRKSYTAVPDEDGVELLPDQEAGVTDGPSQ PRTLEEEVDNWNENAADDWDGDIAAEASPPVAKAKELDAHDPGEAKKRTD
Coding	>Ophio5\|6639 ATGCGCATACGCTTGCCCTTTGCCGGCGGCTTCCTGCTGCTGCTGCTGGCTGCTGCCTATGCTGGTCTCTCCACC CTCCAGCTCGGCAACTTTGTCAACGACAAGGTCCTGCACACGGTCACCTTCTTCCTCCTCACCGTCGTCTTCTAT TGGATCGTCGATACGAACCGCCGGCGCACCCTCAATATGACGCTCGTCGTCTGTACCCTCATACTCGGCGTCGGA TCCGAGTTTGTTCAAAGCTTCCTGCCCAACGATCGCGACTTCGACCTCTACGACATCGTCGCCAACGTCGTGGGC AGCCTAGCCGGCCTCGGTCTTTGCTCGTGGTACCATAGGCGCATGCTCGAGCGGCGCAGGAAGCGCAAGTCATAC ACGGCCGTTCCCGACGAGGACGGGGTCGAGCTCTTGCCGGATCAAGAGGCGGGTGTGACGGATGGTCCGTCTCAG CCAAGAACGCTGGAGGAGGAAGTTGACAATTGGAACGAGAACGCGGCCGACGACTGGGATGGTGACATTGCCGCC GAGGCGTCCCCGCCCGTTGCCAAGGCCAAGGAACTAGATGCCCACGATCCGGGAGAAGCCAAGAAGCGGACGGAT
Transcript	>Ophio5\|6639 ATGCGCATACGCTTGCCCTTTGCCGGCGGCTTCCTGCTGCTGCTGCTGGCTGCTGCCTATGCTGGTCTCTCCACC CTCCAGCTCGGCAACTTTGTCAACGACAAGGTCCTGCACACGGTCACCTTCTTCCTCCTCACCGTCGTCTTCTAT TGGATCGTCGATACGAACCGCCGGCGCACCCTCAATATGACGCTCGTCGTCTGTACCCTCATACTCGGCGTCGGA TCCGAGTTTGTTCAAAGCTTCCTGCCCAACGATCGCGACTTCGACCTCTACGACATCGTCGCCAACGTCGTGGGC AGCCTAGCCGGCCTCGGTCTTTGCTCGTGGTACCATAGGCGCATGCTCGAGCGGCGCAGGAAGCGCAAGTCATAC ACGGCCGTTCCCGACGAGGACGGGGTCGAGCTCTTGCCGGATCAAGAGGCGGGTGTGACGGATGGTCCGTCTCAG CCAAGAACGCTGGAGGAGGAAGTTGACAATTGGAACGAGAACGCGGCCGACGACTGGGATGGTGACATTGCCGCC GAGGCGTCCCCGCCCGTTGCCAAGGCCAAGGAACTAGATGCCCACGATCCGGGAGAAGCCAAGAAGCGGACGGAT TGA
Gene	>Ophio5\|6639 ATGCGCATACGCTTGCCCTTTGCCGGTGAGTCTGCTCCTCACCGTGTCGGTGTCGACAGCGTCGGGCTTGCTGAT GTCGTCCACGGCCAGGCGGCTTCCTGCTGCTGCTGCTGGCTGCTGCCTATGCTGGTCTCTCCACCCTCCAGCTCG GCAACTTTGTCAACGACAAGGTCCTGCACACGGTCACCTTCTTCCTCCTCACCGTCGTCTTCTATTGGATCGTCG ATACGAACCGCCGGCGCACCCTCAATATGACGCTCGTCGTCTGTACCCTCATACTCGGCGTCGGATCCGAGTTTG TTCAAAGCTTCCTGCCCAACGATCGCGACTTCGACCTCTACGACATCGTCGCCAACGTCGTGGGCAGCCTAGCCG GCCTCGGTCTTTGCTCGTGGTACCATAGGCGCATGCTCGAGCGGCGCAGGAAGCGCAAGTCATACACGGCCGTTC CCGACGAGGACGGGGTCGAGCTCTTGCCGGATCAAGAGGCGGGTGTGACGGATGGTCCGTCTCAGCCAAGAACGC TGGAGGAGGAAGTTGACAATTGGAACGAGAACGCGGCCGACGACTGGGATGGTGACATTGCCGCCGAGGCGTCCC CGCCCGTTGCCAAGGCCAAGGAACTAGATGCCCACGATCCGGGAGAAGCCAAGAAGCGGACGGATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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