© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6625 |
| Gene name | |
| Location | scaffold_590:5014..6625 |
| Strand | - |
| Gene length (bp) | 1611 |
| Transcript length (bp) | 1437 |
| Coding sequence length (bp) | 1434 |
| Protein length (aa) | 478 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02582 | DUF155 | RMND1/Sif2-Sif3/Mrx10, DUF155 | 1.4E-51 | 254 | 424 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q03441|RMD1_YEAST | Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 | 60 | 477 | 1.0E-129 |
| sp|O74446|SIF2_SCHPO | Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2 | 73 | 472 | 4.0E-129 |
| sp|P43620|RMD8_YEAST | Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 | 252 | 471 | 2.0E-43 |
| sp|Q09877|SIF3_SCHPO | Sad1-interacting factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif3 PE=1 SV=2 | 77 | 438 | 7.0E-43 |
| sp|Q8CI78|RMND1_MOUSE | Required for meiotic nuclear division protein 1 homolog OS=Mus musculus GN=Rmnd1 PE=1 SV=1 | 254 | 463 | 8.0E-25 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q03441|RMD1_YEAST | Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 | 60 | 477 | 1.0E-129 |
| sp|O74446|SIF2_SCHPO | Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2 | 73 | 472 | 4.0E-129 |
| sp|P43620|RMD8_YEAST | Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 | 252 | 471 | 2.0E-43 |
| sp|Q09877|SIF3_SCHPO | Sad1-interacting factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif3 PE=1 SV=2 | 77 | 438 | 7.0E-43 |
| sp|Q8CI78|RMND1_MOUSE | Required for meiotic nuclear division protein 1 homolog OS=Mus musculus GN=Rmnd1 PE=1 SV=1 | 254 | 463 | 8.0E-25 |
| sp|Q9NWS8|RMND1_HUMAN | Required for meiotic nuclear division protein 1 homolog OS=Homo sapiens GN=RMND1 PE=1 SV=2 | 254 | 463 | 4.0E-24 |
| sp|Q5RAR5|RMND1_PONAB | Required for meiotic nuclear division protein 1 homolog OS=Pongo abelii GN=RMND1 PE=2 SV=1 | 192 | 463 | 3.0E-23 |
| sp|Q05648|MRX10_YEAST | MIOREX complex component 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRX10 PE=1 SV=1 | 259 | 462 | 6.0E-19 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 68 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 452 | 474 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6625 MERAASDENTPLVPATDSRPRSTRTVTFSVDPVTRTIEPDSSPPALTSLNNNLRRRYSHGSGVPQPLPPSVVSKI GPQRSTKKTEKLKLLPNPDLQDGEDEESGRDVYSQYTRIKDPTARRDAARLGKSDRARLPRVTAYCTANRYDMDG LMRFFKGRGKTRGANPKLIDECIYTPYAYAKPVAVALPAASPLRSPHRRHSTGGDSYDADALRQLSPPAADTYHD VVVEDDLPALDSEVAAPELDVQVHTPEAFLFDYGVVVVWGMTEAHEARLLRDIAKFEVEKLALDDVETEHFNFYY THEYQARIYNDFITLRDKHNYMTKLAISHALAQSVKTSLFEELIASTVDTCKDIPTQIALTGKINLSRKQINMQI GELFILRINIHLNGSVLDTPELFWVEPQLEPVYQAVRSYLEMDQRVELLTERLDVIADLLAVLKDQLSHGHDEKL EWIVIVLIAMEILVAAINIVVDIYAGEV |
| Coding | >Ophio5|6625 ATGGAGCGCGCGGCCTCGGACGAGAACACGCCCTTGGTACCGGCCACCGACAGCCGGCCTCGGAGCACGCGGACC GTCACCTTCAGCGTCGACCCCGTCACTCGCACCATCGAGCCGGACTCCTCGCCGCCGGCGCTGACGTCGCTCAAC AACAACCTGCGCAGACGGTATAGTCATGGCAGTGGTGTCCCGCAGCCGTTGCCCCCGTCTGTCGTTTCCAAAATT GGGCCTCAGCGGAGCACCAAGAAGACGGAGAAGCTGAAGCTGTTGCCCAACCCGGATCTTCAAGATGGCGAGGAC GAGGAGAGCGGACGCGACGTTTACTCGCAGTATACGCGTATCAAGGACCCGACGGCTCGGAGGGATGCCGCGCGG CTCGGCAAAAGTGATCGCGCTCGCCTCCCTCGCGTCACGGCTTACTGTACGGCCAATCGGTACGACATGGACGGC CTCATGCGCTTCTTCAAGGGCCGCGGCAAGACGCGAGGCGCCAATCCGAAGCTCATCGACGAGTGCATCTACACG CCCTACGCCTACGCAAAGCCCGTCGCCGTCGCCCTTCCCGCCGCCTCTCCCCTGCGTTCCCCTCACCGACGCCAC TCGACTGGCGGTGACTCATACGACGCCGATGCTCTTCGTCAGCTGTCGCCGCCCGCTGCCGATACCTACCATGAT GTCGTCGTCGAGGACGACCTGCCCGCGCTCGATTCAGAAGTCGCAGCGCCCGAGCTCGACGTCCAGGTTCATACG CCCGAGGCCTTTCTCTTCGACTACGGCGTCGTCGTCGTCTGGGGCATGACGGAGGCGCATGAGGCTCGCCTCCTG AGGGACATTGCCAAGTTTGAGGTCGAGAAGCTGGCGCTCGATGATGTGGAAACGGAGCACTTCAACTTTTACTAC ACGCACGAGTATCAGGCGCGCATCTACAACGACTTCATCACCCTTCGAGACAAACACAACTACATGACCAAGCTG GCCATATCACACGCTCTCGCCCAGAGCGTCAAGACGTCCCTGTTCGAGGAGCTCATCGCCTCGACCGTGGACACC TGCAAGGACATACCGACGCAAATAGCCCTGACTGGCAAGATCAACCTTAGCAGGAAACAGATCAACATGCAAATC GGCGAGCTCTTCATTCTCCGCATCAACATCCACCTCAACGGCTCCGTCCTCGACACCCCCGAGCTCTTCTGGGTC GAGCCCCAGCTCGAGCCCGTCTACCAGGCCGTTCGGAGTTACCTGGAGATGGACCAGCGCGTCGAGCTGCTGACG GAGCGGCTCGATGTCATTGCCGACTTGCTGGCTGTGCTAAAGGACCAGCTCAGCCATGGCCACGACGAAAAGCTG GAGTGGATTGTCATCGTCCTCATCGCCATGGAGATTCTCGTCGCCGCCATCAACATCGTGGTGGATATTTACGCT GGCGAGGTA |
| Transcript | >Ophio5|6625 ATGGAGCGCGCGGCCTCGGACGAGAACACGCCCTTGGTACCGGCCACCGACAGCCGGCCTCGGAGCACGCGGACC GTCACCTTCAGCGTCGACCCCGTCACTCGCACCATCGAGCCGGACTCCTCGCCGCCGGCGCTGACGTCGCTCAAC AACAACCTGCGCAGACGGTATAGTCATGGCAGTGGTGTCCCGCAGCCGTTGCCCCCGTCTGTCGTTTCCAAAATT GGGCCTCAGCGGAGCACCAAGAAGACGGAGAAGCTGAAGCTGTTGCCCAACCCGGATCTTCAAGATGGCGAGGAC GAGGAGAGCGGACGCGACGTTTACTCGCAGTATACGCGTATCAAGGACCCGACGGCTCGGAGGGATGCCGCGCGG CTCGGCAAAAGTGATCGCGCTCGCCTCCCTCGCGTCACGGCTTACTGTACGGCCAATCGGTACGACATGGACGGC CTCATGCGCTTCTTCAAGGGCCGCGGCAAGACGCGAGGCGCCAATCCGAAGCTCATCGACGAGTGCATCTACACG CCCTACGCCTACGCAAAGCCCGTCGCCGTCGCCCTTCCCGCCGCCTCTCCCCTGCGTTCCCCTCACCGACGCCAC TCGACTGGCGGTGACTCATACGACGCCGATGCTCTTCGTCAGCTGTCGCCGCCCGCTGCCGATACCTACCATGAT GTCGTCGTCGAGGACGACCTGCCCGCGCTCGATTCAGAAGTCGCAGCGCCCGAGCTCGACGTCCAGGTTCATACG CCCGAGGCCTTTCTCTTCGACTACGGCGTCGTCGTCGTCTGGGGCATGACGGAGGCGCATGAGGCTCGCCTCCTG AGGGACATTGCCAAGTTTGAGGTCGAGAAGCTGGCGCTCGATGATGTGGAAACGGAGCACTTCAACTTTTACTAC ACGCACGAGTATCAGGCGCGCATCTACAACGACTTCATCACCCTTCGAGACAAACACAACTACATGACCAAGCTG GCCATATCACACGCTCTCGCCCAGAGCGTCAAGACGTCCCTGTTCGAGGAGCTCATCGCCTCGACCGTGGACACC TGCAAGGACATACCGACGCAAATAGCCCTGACTGGCAAGATCAACCTTAGCAGGAAACAGATCAACATGCAAATC GGCGAGCTCTTCATTCTCCGCATCAACATCCACCTCAACGGCTCCGTCCTCGACACCCCCGAGCTCTTCTGGGTC GAGCCCCAGCTCGAGCCCGTCTACCAGGCCGTTCGGAGTTACCTGGAGATGGACCAGCGCGTCGAGCTGCTGACG GAGCGGCTCGATGTCATTGCCGACTTGCTGGCTGTGCTAAAGGACCAGCTCAGCCATGGCCACGACGAAAAGCTG GAGTGGATTGTCATCGTCCTCATCGCCATGGAGATTCTCGTCGCCGCCATCAACATCGTGGTGGATATTTACGCT GGCGAGGTATAG |
| Gene | >Ophio5|6625 ATGGAGCGCGCGGCCTCGGACGAGAACACGCCCTTGGTACCGGCCACCGACAGCCGGCCTCGGAGCACGCGGACC GTCACCTTCAGCGTCGACCCCGTCACTCGCACCATCGAGCCGGACTCCTCGCCGCCGGCGCTGACGTCGCTCAAC AACAACCTGCGCAGACGGTATAGTCATGGCAGTGGTGTCCCGCAGCCGTTGCCCCCGTCTGTCGTTTCCAAAATT GGGCCTCAGCGGAGCACCAAGAAGACGGAGAAGCTGAAGCTGTTGCCCAACCCGGATCTTCAAGATGGCGAGGAC GAGGAGAGCGGACGCGACGTTTACTCGCAGTATACGCGTATCAAGGACCCGACGGCTCGGAGGGATGCCGCGCGG CTCGGCAAAAGTGATCGCGCTCGCCTCCCTCGCGTCACGGCTTACTGTACGGCCAATCGGTACGACATGGACGGC CTCATGCGCTTCTTCAAGGGCCGCGGCAAGACGCGAGGCGCCAATCCGAAGCTCATCGACGAGTGCATCTACACG CCCTACGCCTACGCAAAGCCCGTCGCCGTCGCCCTTCCCGCCGCCTCTCCCCTGCGTTCCCCTCACCGACGCCAC TCGACTGGCGGTGACTCATACGACGCCGATGCTCTTCGTCAGCTGTCGCCGCCCGCTGCCGATACCTACCATGAT GTCGTCGTCGAGGACGACCTGCCCGCGCTCGATTCAGAAGTCGCAGCGCCCGAGCTCGACGTCCAGGTTCATACG CCCGAGGCCTTTCTCTTCGACTACGGCGTCGTCGTCGTCTGGGGCATGACGGAGGCGCATGAGGCTCGCCTCCTG AGGGACATTGCCAAGTTTGAGGTCGAGAAGCTGGCGCTCGATGATGTGGAAACGGAGCACTTCAACTTTTACTAC ACGCACGAGTATCAGGCGCGCATCTACAACGACTTCATCACCCTTCGAGACAAACACAACTACATGACCAAGCTG GCCATATCACACGCTCTCGCCCAGAGCGTCAAGGTGAAGGCTGGCCTCGATTCACTGATCCTCTCCTCGGCGCCT GCTAACGGGCTGGCAATAGACGTCCCTGTTCGAGGAGCTCATCGCCTCGACCGTGGACACCTGCAAGGACATACC GACGCAAATAGCCCTGACTGGCAAGATCAACCTTAGCAGGAAACAGATCAACATGCAAATCGGCGAGCTCTTCAT TCTCCGCATCAACATCCACCTCAACGGCTCCGTCCTCGACACCCCCGAGCTCTTCTGGGTCGAGCCCCAGCTCGA GCCCGTCTACCAGGCCGTTCGGAGTTACCTGGAGATGGACCAGCGCGTCGAGCTGCTGACGGAGCGGCTCGATGT CATTGCCGACTTGCTGGCTGTGCTAAAGGACCAGCTCAGCCATGGCCACGACGAAAAGCTGGAGTGGATTGGTGA GCCGCCCCCCTTTCTTTTTTCCCTTTTTTTTTCCCTTTTTTTTTTTTTCCTGACTTGTTTCCCACGAGCGTCACG TCATCTTCTCCGCTCCGCTGACACTATCGCATAGTCATCGTCCTCATCGCCATGGAGATTCTCGTCGCCGCCATC AACATCGTGGTGGATATTTACGCTGGCGAGGTATAG |