Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6595
Gene name
Locationscaffold_588:5645..6612
Strand+
Gene length (bp)967
Transcript length (bp)708
Coding sequence length (bp)705
Protein length (aa) 235

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13426 PAS_9 PAS domain 2.6E-09 128 190

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q01371|WC1_NEUCR White collar 1 protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=wc-1 PE=1 SV=2 88 161 1.0E-22
sp|P93025|PHOT2_ARATH Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2 93 161 6.0E-10
sp|Q2RBR1|PHT1B_ORYSJ Phototropin-1B OS=Oryza sativa subsp. japonica GN=PHOT1B PE=1 SV=2 122 189 7.0E-10
sp|Q2QYY8|PHT1A_ORYSJ Phototropin-1A OS=Oryza sativa subsp. japonica GN=PHOT1A PE=1 SV=2 122 189 7.0E-10
sp|Q2RBR1|PHT1B_ORYSJ Phototropin-1B OS=Oryza sativa subsp. japonica GN=PHOT1B PE=1 SV=2 122 167 1.0E-09
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|Q01371|WC1_NEUCR White collar 1 protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=wc-1 PE=1 SV=2 88 161 1.0E-22
sp|P93025|PHOT2_ARATH Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2 93 161 6.0E-10
sp|Q2RBR1|PHT1B_ORYSJ Phototropin-1B OS=Oryza sativa subsp. japonica GN=PHOT1B PE=1 SV=2 122 189 7.0E-10
sp|Q2QYY8|PHT1A_ORYSJ Phototropin-1A OS=Oryza sativa subsp. japonica GN=PHOT1A PE=1 SV=2 122 189 7.0E-10
sp|Q2RBR1|PHT1B_ORYSJ Phototropin-1B OS=Oryza sativa subsp. japonica GN=PHOT1B PE=1 SV=2 122 167 1.0E-09
sp|Q2QYY8|PHT1A_ORYSJ Phototropin-1A OS=Oryza sativa subsp. japonica GN=PHOT1A PE=1 SV=2 122 167 1.0E-09
sp|Q67UX0|ADO2_ORYSJ Putative adagio-like protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0150800 PE=3 SV=1 119 196 1.0E-09
sp|Q9ST27|PHOT2_ORYSJ Phototropin-2 OS=Oryza sativa subsp. japonica GN=PHOT2 PE=1 SV=1 122 213 2.0E-09
sp|Q4ZSY3|LOVHK_PSEU2 Blue-light-activated protein OS=Pseudomonas syringae pv. syringae (strain B728a) GN=Psyr_2700 PE=3 SV=1 104 187 2.0E-09
sp|Q9ST27|PHOT2_ORYSJ Phototropin-2 OS=Oryza sativa subsp. japonica GN=PHOT2 PE=1 SV=1 122 190 3.0E-09
sp|O34627|PHOT_BACSU Blue-light photoreceptor OS=Bacillus subtilis (strain 168) GN=pfyP PE=1 SV=1 120 213 5.0E-09
sp|Q2NCA3|LVHK1_ERYLH Blue-light-activated histidine kinase 1 OS=Erythrobacter litoralis (strain HTCC2594) GN=ELI_02980 PE=1 SV=1 120 166 6.0E-09
sp|O48963|PHOT1_ARATH Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=1 SV=1 122 180 6.0E-09
sp|O48963|PHOT1_ARATH Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=1 SV=1 122 166 6.0E-09
sp|P93025|PHOT2_ARATH Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2 106 190 8.0E-09
sp|A6X554|LOVHK_OCHA4 Blue-light-activated histidine kinase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=Oant_3652 PE=3 SV=1 122 166 1.0E-08
sp|Q8W420|ADO2_ARATH Adagio protein 2 OS=Arabidopsis thaliana GN=ADO2 PE=1 SV=1 121 189 4.0E-08
sp|Q5Z8K3|ADO1_ORYSJ Adagio-like protein 1 OS=Oryza sativa subsp. japonica GN=Os06g0694000 PE=2 SV=1 121 189 5.0E-08
sp|Q8FW73|LOVHK_BRUSU Blue-light-activated histidine kinase OS=Brucella suis biovar 1 (strain 1330) GN=BRA0588 PE=3 SV=2 122 181 5.0E-08
sp|A9WYQ7|LOVHK_BRUSI Blue-light-activated histidine kinase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=BSUIS_B0585 PE=3 SV=2 122 181 5.0E-08
sp|Q8YC53|LOVHK_BRUME Blue-light-activated histidine kinase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=BMEII0679 PE=1 SV=1 122 181 5.0E-08
sp|A9MBM8|LOVHK_BRUC2 Blue-light-activated histidine kinase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=BCAN_B0589 PE=3 SV=2 122 181 5.0E-08
sp|Q577Y7|LOVHK_BRUAB Blue-light-activated histidine kinase OS=Brucella abortus biovar 1 (strain 9-941) GN=BruAb2_0636 PE=3 SV=2 122 181 5.0E-08
sp|Q2YKK7|LOVHK_BRUA2 Blue-light-activated histidine kinase OS=Brucella abortus (strain 2308) GN=BAB2_0652 PE=1 SV=2 122 181 5.0E-08
sp|B2SB67|LOVHK_BRUA1 Blue-light-activated histidine kinase OS=Brucella abortus (strain S19) GN=BAbS19_II06090 PE=3 SV=1 122 181 5.0E-08
sp|Q2NB98|LVHTH_ERYLH Light-activated DNA-binding protein EL222 OS=Erythrobacter litoralis (strain HTCC2594) GN=ELI_04755 PE=1 SV=1 102 164 6.0E-08
sp|A5VUS1|LOVHK_BRUO2 Blue-light-activated histidine kinase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=BOV_A0554 PE=3 SV=2 122 181 8.0E-08
sp|O64511|TLOV1_ARATH Protein TWIN LOV 1 OS=Arabidopsis thaliana GN=TLP1 PE=1 SV=2 129 166 1.0E-07
sp|Q881J7|LOVHK_PSESM Blue-light-activated protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_2896 PE=1 SV=1 104 161 2.0E-07
sp|Q2NB77|LVHK2_ERYLH Blue-light-activated histidine kinase 2 OS=Erythrobacter litoralis (strain HTCC2594) GN=ELI_04860 PE=1 SV=1 121 179 2.0E-07
sp|Q1M667|LOVHK_RHIL3 Blue-light-activated histidine kinase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=lov PE=1 SV=1 122 161 2.0E-07
sp|Q48IV1|LOVHK_PSE14 Blue-light-activated protein OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=PSPPH_2483 PE=3 SV=2 104 167 3.0E-07
sp|Q9C9W9|ADO3_ARATH Adagio protein 3 OS=Arabidopsis thaliana GN=ADO3 PE=1 SV=1 121 189 7.0E-07
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 22 0.45

Transmembrane Domains

Domain # Start End Length
1 210 232 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 347.70 179.41 515.99
CcL In ants, during behavior modification 124.14 47.95 200.33
CcD In ants, recently dead 108.37 57.91 158.83

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000286 yes
CcL CcD 0.643046 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6595
MRARPSSLNLDSPSLTSSSSSSPPTLPRRRSSSFAMASEAPQPPPLNAWEHRALDYSFSAPSVTASAGAIAQASW
CQPRRDPLIFPGLYSGTGFDLMSLLLRIISRPSPQIELGAVDCSVALVVCDLDLPDAPIIYASDSFCDMTGYSKA
EIIGRNCRFLQYSGHDRTKSPSASTKVASQQIRQSMETGRMPEGTVTPSAFKSRSIELTFYCGPASISFHIVLSA
FSIIVAFRHS
Coding >Ophio5|6595
ATGCGTGCCCGTCCCTCCTCTCTCAACCTTGATTCTCCTTCCTTGACCTCGTCCTCGTCCTCCTCTCCGCCTACT
CTACCCCGTCGACGATCGTCGTCTTTCGCCATGGCATCTGAAGCGCCGCAGCCTCCGCCTCTGAACGCGTGGGAA
CACCGTGCTCTAGACTACAGCTTCTCCGCCCCGTCAGTCACTGCTTCGGCCGGAGCCATCGCCCAGGCCTCGTGG
TGTCAACCCAGACGGGATCCCTTGATTTTCCCGGGTCTGTACTCTGGTACCGGCTTCGACCTGATGAGCCTCCTG
TTGCGAATCATCAGCCGTCCCAGTCCGCAGATCGAGCTAGGCGCCGTCGACTGCTCCGTCGCCCTCGTCGTCTGT
GACCTCGATCTCCCGGATGCGCCCATCATCTACGCGTCTGACTCCTTCTGCGACATGACGGGTTACTCCAAGGCC
GAGATTATTGGCCGGAATTGTCGCTTCCTGCAGTACTCCGGACACGATAGAACCAAGTCGCCCTCAGCTTCCACC
AAGGTCGCCTCCCAGCAGATCCGCCAATCTATGGAGACCGGTCGGATGCCGGAGGGCACCGTTACGCCGTCGGCT
TTCAAGTCCAGGTCGATTGAGCTGACGTTTTATTGTGGCCCTGCCAGCATTTCCTTTCACATTGTTTTGTCAGCC
TTCTCGATCATTGTCGCTTTCAGGCATTCA
Transcript >Ophio5|6595
ATGCGTGCCCGTCCCTCCTCTCTCAACCTTGATTCTCCTTCCTTGACCTCGTCCTCGTCCTCCTCTCCGCCTACT
CTACCCCGTCGACGATCGTCGTCTTTCGCCATGGCATCTGAAGCGCCGCAGCCTCCGCCTCTGAACGCGTGGGAA
CACCGTGCTCTAGACTACAGCTTCTCCGCCCCGTCAGTCACTGCTTCGGCCGGAGCCATCGCCCAGGCCTCGTGG
TGTCAACCCAGACGGGATCCCTTGATTTTCCCGGGTCTGTACTCTGGTACCGGCTTCGACCTGATGAGCCTCCTG
TTGCGAATCATCAGCCGTCCCAGTCCGCAGATCGAGCTAGGCGCCGTCGACTGCTCCGTCGCCCTCGTCGTCTGT
GACCTCGATCTCCCGGATGCGCCCATCATCTACGCGTCTGACTCCTTCTGCGACATGACGGGTTACTCCAAGGCC
GAGATTATTGGCCGGAATTGTCGCTTCCTGCAGTACTCCGGACACGATAGAACCAAGTCGCCCTCAGCTTCCACC
AAGGTCGCCTCCCAGCAGATCCGCCAATCTATGGAGACCGGTCGGATGCCGGAGGGCACCGTTACGCCGTCGGCT
TTCAAGTCCAGGTCGATTGAGCTGACGTTTTATTGTGGCCCTGCCAGCATTTCCTTTCACATTGTTTTGTCAGCC
TTCTCGATCATTGTCGCTTTCAGGCATTCATGA
Gene >Ophio5|6595
ATGCGTGCCCGTCCCTCCTCTCTCAACCTTGATTCTCCTTCCTTGACCTCGTCCTCGTCCTCCTCTCCGCCTACT
CTACCCCGTCGACGATCGTCGTCTTTCGCCATGGCATCTGAAGCGCCGCAGCCTCCGCCTCTGAACGCGTGGGAA
CACCGTGCTCTAGACGTGAGTGGTTTCGACTGCCAACTTTGATTTTGACGACTGACACTTCCTTGTAGTACAGCT
TCTCCGCCCCGTCAGTCACTGCTTCGGCCGGAGCCATCGCCCAGGCCTCGTGGTGTCAACCCAGACGGGATCCCT
TGATTTTCCCGGGTCTGTACTCTGGTACCGGCTTCGACCTGATGAGCCTCCTGGTACGCTCTGCTTCGTTGCTCA
CTCCCAGCCGTCTGCACAGTCTGACCCGCCTTAGTTGCGAATCATCAGCCGTCCCAGTCCGCAGATCGAGCTAGG
CGCCGTCGACTGCTCCGTCGCCCTCGTCGTCTGTGACCTCGATCTCCCGGATGCGCCCATCATCTACGCGTCTGA
CTCCTTCTGCGACATGACGGGTTACTCCAAGGCCGAGATTATTGGCCGGAATTGTCGCTTCCTGCAGTACTCCGG
ACACGATAGAACCAAGTCGCCCTCAGCTTCCACCAAGGTCGCCTCCCAGCAGATCCGCCAATCTATGGAGACCGG
TCGTGAAGTTCAAGTCACGCTTCCCAATTACAAAAAGAATGGGGAGTTGTTCAACAATCACCTGACCATTATCCC
CGTTGACAGGGATGCCGGAGGGCACCGTTACGCCGTCGGCTTTCAAGTCCAGGTCGATTGAGCTGACGTTTTATT
GTGGCCCTGCCGTAAGCCAGTGGGCTTTGATTTTCTACCACATTTCTTATGCGCAATCGCTGAAGCAGGCGTGTT
ACAGAGCATTTCCTTTCACATTGTTTTGTCAGCCTTCTCGATCATTGTCGCTTTCAGGCATTCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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