© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6595 |
| Gene name | |
| Location | scaffold_588:5645..6612 |
| Strand | + |
| Gene length (bp) | 967 |
| Transcript length (bp) | 708 |
| Coding sequence length (bp) | 705 |
| Protein length (aa) | 235 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13426 | PAS_9 | PAS domain | 2.6E-09 | 128 | 190 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q01371|WC1_NEUCR | White collar 1 protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=wc-1 PE=1 SV=2 | 88 | 161 | 1.0E-22 |
| sp|P93025|PHOT2_ARATH | Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2 | 93 | 161 | 6.0E-10 |
| sp|Q2RBR1|PHT1B_ORYSJ | Phototropin-1B OS=Oryza sativa subsp. japonica GN=PHOT1B PE=1 SV=2 | 122 | 189 | 7.0E-10 |
| sp|Q2QYY8|PHT1A_ORYSJ | Phototropin-1A OS=Oryza sativa subsp. japonica GN=PHOT1A PE=1 SV=2 | 122 | 189 | 7.0E-10 |
| sp|Q2RBR1|PHT1B_ORYSJ | Phototropin-1B OS=Oryza sativa subsp. japonica GN=PHOT1B PE=1 SV=2 | 122 | 167 | 1.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q01371|WC1_NEUCR | White collar 1 protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=wc-1 PE=1 SV=2 | 88 | 161 | 1.0E-22 |
| sp|P93025|PHOT2_ARATH | Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2 | 93 | 161 | 6.0E-10 |
| sp|Q2RBR1|PHT1B_ORYSJ | Phototropin-1B OS=Oryza sativa subsp. japonica GN=PHOT1B PE=1 SV=2 | 122 | 189 | 7.0E-10 |
| sp|Q2QYY8|PHT1A_ORYSJ | Phototropin-1A OS=Oryza sativa subsp. japonica GN=PHOT1A PE=1 SV=2 | 122 | 189 | 7.0E-10 |
| sp|Q2RBR1|PHT1B_ORYSJ | Phototropin-1B OS=Oryza sativa subsp. japonica GN=PHOT1B PE=1 SV=2 | 122 | 167 | 1.0E-09 |
| sp|Q2QYY8|PHT1A_ORYSJ | Phototropin-1A OS=Oryza sativa subsp. japonica GN=PHOT1A PE=1 SV=2 | 122 | 167 | 1.0E-09 |
| sp|Q67UX0|ADO2_ORYSJ | Putative adagio-like protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0150800 PE=3 SV=1 | 119 | 196 | 1.0E-09 |
| sp|Q9ST27|PHOT2_ORYSJ | Phototropin-2 OS=Oryza sativa subsp. japonica GN=PHOT2 PE=1 SV=1 | 122 | 213 | 2.0E-09 |
| sp|Q4ZSY3|LOVHK_PSEU2 | Blue-light-activated protein OS=Pseudomonas syringae pv. syringae (strain B728a) GN=Psyr_2700 PE=3 SV=1 | 104 | 187 | 2.0E-09 |
| sp|Q9ST27|PHOT2_ORYSJ | Phototropin-2 OS=Oryza sativa subsp. japonica GN=PHOT2 PE=1 SV=1 | 122 | 190 | 3.0E-09 |
| sp|O34627|PHOT_BACSU | Blue-light photoreceptor OS=Bacillus subtilis (strain 168) GN=pfyP PE=1 SV=1 | 120 | 213 | 5.0E-09 |
| sp|Q2NCA3|LVHK1_ERYLH | Blue-light-activated histidine kinase 1 OS=Erythrobacter litoralis (strain HTCC2594) GN=ELI_02980 PE=1 SV=1 | 120 | 166 | 6.0E-09 |
| sp|O48963|PHOT1_ARATH | Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=1 SV=1 | 122 | 180 | 6.0E-09 |
| sp|O48963|PHOT1_ARATH | Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=1 SV=1 | 122 | 166 | 6.0E-09 |
| sp|P93025|PHOT2_ARATH | Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2 | 106 | 190 | 8.0E-09 |
| sp|A6X554|LOVHK_OCHA4 | Blue-light-activated histidine kinase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=Oant_3652 PE=3 SV=1 | 122 | 166 | 1.0E-08 |
| sp|Q8W420|ADO2_ARATH | Adagio protein 2 OS=Arabidopsis thaliana GN=ADO2 PE=1 SV=1 | 121 | 189 | 4.0E-08 |
| sp|Q5Z8K3|ADO1_ORYSJ | Adagio-like protein 1 OS=Oryza sativa subsp. japonica GN=Os06g0694000 PE=2 SV=1 | 121 | 189 | 5.0E-08 |
| sp|Q8FW73|LOVHK_BRUSU | Blue-light-activated histidine kinase OS=Brucella suis biovar 1 (strain 1330) GN=BRA0588 PE=3 SV=2 | 122 | 181 | 5.0E-08 |
| sp|A9WYQ7|LOVHK_BRUSI | Blue-light-activated histidine kinase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=BSUIS_B0585 PE=3 SV=2 | 122 | 181 | 5.0E-08 |
| sp|Q8YC53|LOVHK_BRUME | Blue-light-activated histidine kinase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=BMEII0679 PE=1 SV=1 | 122 | 181 | 5.0E-08 |
| sp|A9MBM8|LOVHK_BRUC2 | Blue-light-activated histidine kinase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=BCAN_B0589 PE=3 SV=2 | 122 | 181 | 5.0E-08 |
| sp|Q577Y7|LOVHK_BRUAB | Blue-light-activated histidine kinase OS=Brucella abortus biovar 1 (strain 9-941) GN=BruAb2_0636 PE=3 SV=2 | 122 | 181 | 5.0E-08 |
| sp|Q2YKK7|LOVHK_BRUA2 | Blue-light-activated histidine kinase OS=Brucella abortus (strain 2308) GN=BAB2_0652 PE=1 SV=2 | 122 | 181 | 5.0E-08 |
| sp|B2SB67|LOVHK_BRUA1 | Blue-light-activated histidine kinase OS=Brucella abortus (strain S19) GN=BAbS19_II06090 PE=3 SV=1 | 122 | 181 | 5.0E-08 |
| sp|Q2NB98|LVHTH_ERYLH | Light-activated DNA-binding protein EL222 OS=Erythrobacter litoralis (strain HTCC2594) GN=ELI_04755 PE=1 SV=1 | 102 | 164 | 6.0E-08 |
| sp|A5VUS1|LOVHK_BRUO2 | Blue-light-activated histidine kinase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=BOV_A0554 PE=3 SV=2 | 122 | 181 | 8.0E-08 |
| sp|O64511|TLOV1_ARATH | Protein TWIN LOV 1 OS=Arabidopsis thaliana GN=TLP1 PE=1 SV=2 | 129 | 166 | 1.0E-07 |
| sp|Q881J7|LOVHK_PSESM | Blue-light-activated protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_2896 PE=1 SV=1 | 104 | 161 | 2.0E-07 |
| sp|Q2NB77|LVHK2_ERYLH | Blue-light-activated histidine kinase 2 OS=Erythrobacter litoralis (strain HTCC2594) GN=ELI_04860 PE=1 SV=1 | 121 | 179 | 2.0E-07 |
| sp|Q1M667|LOVHK_RHIL3 | Blue-light-activated histidine kinase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=lov PE=1 SV=1 | 122 | 161 | 2.0E-07 |
| sp|Q48IV1|LOVHK_PSE14 | Blue-light-activated protein OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=PSPPH_2483 PE=3 SV=2 | 104 | 167 | 3.0E-07 |
| sp|Q9C9W9|ADO3_ARATH | Adagio protein 3 OS=Arabidopsis thaliana GN=ADO3 PE=1 SV=1 | 121 | 189 | 7.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 210 | 232 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6595 MRARPSSLNLDSPSLTSSSSSSPPTLPRRRSSSFAMASEAPQPPPLNAWEHRALDYSFSAPSVTASAGAIAQASW CQPRRDPLIFPGLYSGTGFDLMSLLLRIISRPSPQIELGAVDCSVALVVCDLDLPDAPIIYASDSFCDMTGYSKA EIIGRNCRFLQYSGHDRTKSPSASTKVASQQIRQSMETGRMPEGTVTPSAFKSRSIELTFYCGPASISFHIVLSA FSIIVAFRHS |
| Coding | >Ophio5|6595 ATGCGTGCCCGTCCCTCCTCTCTCAACCTTGATTCTCCTTCCTTGACCTCGTCCTCGTCCTCCTCTCCGCCTACT CTACCCCGTCGACGATCGTCGTCTTTCGCCATGGCATCTGAAGCGCCGCAGCCTCCGCCTCTGAACGCGTGGGAA CACCGTGCTCTAGACTACAGCTTCTCCGCCCCGTCAGTCACTGCTTCGGCCGGAGCCATCGCCCAGGCCTCGTGG TGTCAACCCAGACGGGATCCCTTGATTTTCCCGGGTCTGTACTCTGGTACCGGCTTCGACCTGATGAGCCTCCTG TTGCGAATCATCAGCCGTCCCAGTCCGCAGATCGAGCTAGGCGCCGTCGACTGCTCCGTCGCCCTCGTCGTCTGT GACCTCGATCTCCCGGATGCGCCCATCATCTACGCGTCTGACTCCTTCTGCGACATGACGGGTTACTCCAAGGCC GAGATTATTGGCCGGAATTGTCGCTTCCTGCAGTACTCCGGACACGATAGAACCAAGTCGCCCTCAGCTTCCACC AAGGTCGCCTCCCAGCAGATCCGCCAATCTATGGAGACCGGTCGGATGCCGGAGGGCACCGTTACGCCGTCGGCT TTCAAGTCCAGGTCGATTGAGCTGACGTTTTATTGTGGCCCTGCCAGCATTTCCTTTCACATTGTTTTGTCAGCC TTCTCGATCATTGTCGCTTTCAGGCATTCA |
| Transcript | >Ophio5|6595 ATGCGTGCCCGTCCCTCCTCTCTCAACCTTGATTCTCCTTCCTTGACCTCGTCCTCGTCCTCCTCTCCGCCTACT CTACCCCGTCGACGATCGTCGTCTTTCGCCATGGCATCTGAAGCGCCGCAGCCTCCGCCTCTGAACGCGTGGGAA CACCGTGCTCTAGACTACAGCTTCTCCGCCCCGTCAGTCACTGCTTCGGCCGGAGCCATCGCCCAGGCCTCGTGG TGTCAACCCAGACGGGATCCCTTGATTTTCCCGGGTCTGTACTCTGGTACCGGCTTCGACCTGATGAGCCTCCTG TTGCGAATCATCAGCCGTCCCAGTCCGCAGATCGAGCTAGGCGCCGTCGACTGCTCCGTCGCCCTCGTCGTCTGT GACCTCGATCTCCCGGATGCGCCCATCATCTACGCGTCTGACTCCTTCTGCGACATGACGGGTTACTCCAAGGCC GAGATTATTGGCCGGAATTGTCGCTTCCTGCAGTACTCCGGACACGATAGAACCAAGTCGCCCTCAGCTTCCACC AAGGTCGCCTCCCAGCAGATCCGCCAATCTATGGAGACCGGTCGGATGCCGGAGGGCACCGTTACGCCGTCGGCT TTCAAGTCCAGGTCGATTGAGCTGACGTTTTATTGTGGCCCTGCCAGCATTTCCTTTCACATTGTTTTGTCAGCC TTCTCGATCATTGTCGCTTTCAGGCATTCATGA |
| Gene | >Ophio5|6595 ATGCGTGCCCGTCCCTCCTCTCTCAACCTTGATTCTCCTTCCTTGACCTCGTCCTCGTCCTCCTCTCCGCCTACT CTACCCCGTCGACGATCGTCGTCTTTCGCCATGGCATCTGAAGCGCCGCAGCCTCCGCCTCTGAACGCGTGGGAA CACCGTGCTCTAGACGTGAGTGGTTTCGACTGCCAACTTTGATTTTGACGACTGACACTTCCTTGTAGTACAGCT TCTCCGCCCCGTCAGTCACTGCTTCGGCCGGAGCCATCGCCCAGGCCTCGTGGTGTCAACCCAGACGGGATCCCT TGATTTTCCCGGGTCTGTACTCTGGTACCGGCTTCGACCTGATGAGCCTCCTGGTACGCTCTGCTTCGTTGCTCA CTCCCAGCCGTCTGCACAGTCTGACCCGCCTTAGTTGCGAATCATCAGCCGTCCCAGTCCGCAGATCGAGCTAGG CGCCGTCGACTGCTCCGTCGCCCTCGTCGTCTGTGACCTCGATCTCCCGGATGCGCCCATCATCTACGCGTCTGA CTCCTTCTGCGACATGACGGGTTACTCCAAGGCCGAGATTATTGGCCGGAATTGTCGCTTCCTGCAGTACTCCGG ACACGATAGAACCAAGTCGCCCTCAGCTTCCACCAAGGTCGCCTCCCAGCAGATCCGCCAATCTATGGAGACCGG TCGTGAAGTTCAAGTCACGCTTCCCAATTACAAAAAGAATGGGGAGTTGTTCAACAATCACCTGACCATTATCCC CGTTGACAGGGATGCCGGAGGGCACCGTTACGCCGTCGGCTTTCAAGTCCAGGTCGATTGAGCTGACGTTTTATT GTGGCCCTGCCGTAAGCCAGTGGGCTTTGATTTTCTACCACATTTCTTATGCGCAATCGCTGAAGCAGGCGTGTT ACAGAGCATTTCCTTTCACATTGTTTTGTCAGCCTTCTCGATCATTGTCGCTTTCAGGCATTCATGA |