Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6586
Gene name
Locationscaffold_586:4477..6503
Strand-
Gene length (bp)2026
Transcript length (bp)1869
Coding sequence length (bp)1866
Protein length (aa) 622

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04082 Fungal_trans Fungal specific transcription factor domain 6.3E-12 272 370

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0006351 transcription, DNA-templated Yes
GO:0008270 zinc ion binding Yes
GO:0003677 DNA binding Yes
GO:0046872 metal ion binding No
GO:0003674 molecular_function No
GO:0044237 cellular metabolic process No
GO:0043169 cation binding No
GO:0043167 ion binding No
GO:0008152 metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1901576 organic substance biosynthetic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0003676 nucleic acid binding No
GO:0090304 nucleic acid metabolic process No
GO:0044238 primary metabolic process No
GO:0018130 heterocycle biosynthetic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0008150 biological_process No
GO:0019438 aromatic compound biosynthetic process No
GO:0016070 RNA metabolic process No
GO:0009058 biosynthetic process No
GO:0044249 cellular biosynthetic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0046914 transition metal ion binding No
GO:0097159 organic cyclic compound binding No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0071704 organic substance metabolic process No
GO:0097659 nucleic acid-templated transcription No
GO:0009059 macromolecule biosynthetic process No
GO:1901363 heterocyclic compound binding No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0032774 RNA biosynthetic process No
GO:0009987 cellular process No
GO:0043170 macromolecule metabolic process No
GO:0005488 binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

Domain # Start End Length
1 539 561 22

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Fungal Specific TF

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 11.26 4.80 17.71
CcL In ants, during behavior modification 13.62 5.84 21.39
CcD In ants, recently dead 15.30 6.94 23.66

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.547777 no
SC16a CcD 0.291381 no
CcL CcD 0.720952 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6586
MPAISARHDEPKTPQTPSNRLTLGSLPPPPGSRPLSFVQIQCDAVETGSRCDWCRHHSLPCTFIRTTASRPRPGT
AAAAAAAAAAPMRKPDHSRTSRLRTAALGQIYMSGHNLGSFCSRSGIPYFTPQGERYIYTKTGRWPDLHRRRRRR
DEVVTDFRNATPQQQLPRPPRGPAPELPDRLAVQTLLATYLASDFSLVFPLVDGVLFERTIELAYDPAPASADGA
SARACVFAFLSIASSRFLGAHVKLVVDGHACAAEARTLLDDMLGNVNMTTVQTLLILLTHETFCGRLQAASMYHA
VACRALFNLDAHVLVNDRGWNEAQSREHRQLRVLFWFSYVFDKDVALCTGRPPVIDDEFCDLTLPAWCDHGRFAA
TTTTTTTTTMTNVLVVVDDGAGGGGGRSPWFPGDLRLSVLKSRACRLLYSASSLGQPDAELLRTIRELDEALEHW
RLSLPSAFSPSLSPASSDGLGTSRSMLHMELHLHYYYLVNVIHAAAGRCAVDGLISAPEPGVRSSLELSVQASRS
TLLYLRATSHRLISDGFWLFIFYPMSALVTLFFNVLRDPLHPQAARDVDLLSSAEEVIKTMPVGGITARELAYLN
EVDDFVAELGQLARCALVQGGW
Coding >Ophio5|6586
ATGCCTGCTATAAGCGCAAGGCATGACGAGCCAAAAACCCCCCAAACCCCAAGCAATCGGCTTACCCTCGGCTCA
CTTCCCCCCCCCCCCGGGTCCCGGCCCCTCTCCTTCGTCCAGATCCAATGCGATGCCGTAGAAACAGGGTCTCGG
TGTGACTGGTGCCGACATCACAGCCTACCCTGCACCTTCATCCGAACGACCGCCTCACGACCTCGGCCCGGCACG
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCGATGCGAAAGCCCGACCACAGCCGAACCAGTCGACTGCGGACG
GCGGCGCTAGGACAGATTTACATGTCCGGCCACAATCTAGGCTCGTTTTGTTCACGCAGTGGGATCCCGTACTTT
ACGCCTCAGGGCGAGCGCTACATCTACACCAAGACCGGACGCTGGCCTGATCTCCATCGACGACGACGACGACGA
GATGAAGTCGTGACAGACTTTCGAAACGCGACGCCACAGCAACAGCTTCCGCGTCCGCCTCGAGGTCCAGCCCCG
GAGCTACCGGATCGACTCGCCGTCCAGACTCTGCTAGCGACCTACCTGGCCTCGGATTTCTCTCTGGTTTTCCCC
CTGGTTGACGGCGTTTTGTTCGAGAGGACCATCGAGTTGGCCTATGATCCGGCGCCGGCTTCGGCTGACGGAGCC
AGTGCTAGGGCTTGCGTTTTCGCCTTCTTGTCCATTGCTAGCTCTCGCTTTCTAGGCGCTCATGTCAAGCTCGTC
GTGGATGGCCATGCTTGTGCTGCCGAGGCCCGGACCTTGTTGGACGACATGTTGGGAAACGTCAACATGACGACG
GTGCAAACGCTTCTCATTCTCCTCACGCACGAAACGTTTTGCGGACGACTTCAAGCCGCCTCCATGTATCACGCC
GTCGCCTGCCGCGCCCTCTTCAACCTCGACGCCCACGTCCTCGTCAACGACCGAGGCTGGAACGAGGCTCAGTCG
CGAGAACATCGCCAGCTACGCGTCTTGTTCTGGTTCAGCTACGTGTTCGACAAGGACGTGGCGCTCTGTACCGGA
AGACCTCCCGTCATCGACGATGAATTCTGTGACCTCACTTTACCCGCCTGGTGTGACCATGGACGTTTCGCCGCC
ACCACGACGACGACGACGACGACGACCATGACAAACGTCTTGGTCGTCGTCGATGACGGAGCCGGCGGCGGCGGC
GGCCGTTCGCCTTGGTTTCCGGGGGATTTACGGCTTAGCGTTTTGAAGTCTCGTGCTTGTCGTTTGCTCTACTCG
GCTTCCTCCCTTGGTCAACCAGATGCCGAACTGCTACGGACGATTCGTGAGCTAGACGAAGCTCTCGAACATTGG
CGTCTCTCCCTCCCCTCGGCCTTTTCCCCTTCTCTTTCTCCCGCTTCGTCCGACGGACTGGGCACGTCGCGAAGT
ATGCTTCACATGGAGTTGCATCTACACTACTACTACCTCGTCAACGTCATCCACGCCGCCGCCGGCCGCTGCGCC
GTCGACGGACTCATCTCCGCACCCGAGCCCGGCGTCCGGTCAAGTCTCGAGCTATCCGTTCAAGCGAGCCGATCA
ACCTTGTTGTATTTACGGGCCACCTCCCACCGACTCATCAGCGACGGCTTCTGGCTCTTCATCTTTTATCCCATG
TCCGCTCTCGTCACCCTCTTTTTCAACGTTTTACGCGATCCCCTTCATCCTCAGGCCGCCCGAGATGTCGACCTG
TTATCCTCGGCCGAGGAGGTCATCAAGACGATGCCGGTGGGGGGCATCACCGCTCGTGAGTTGGCCTACCTGAAC
GAGGTGGATGATTTTGTCGCCGAGTTGGGGCAGTTGGCGAGGTGTGCTCTTGTCCAGGGGGGTTGG
Transcript >Ophio5|6586
ATGCCTGCTATAAGCGCAAGGCATGACGAGCCAAAAACCCCCCAAACCCCAAGCAATCGGCTTACCCTCGGCTCA
CTTCCCCCCCCCCCCGGGTCCCGGCCCCTCTCCTTCGTCCAGATCCAATGCGATGCCGTAGAAACAGGGTCTCGG
TGTGACTGGTGCCGACATCACAGCCTACCCTGCACCTTCATCCGAACGACCGCCTCACGACCTCGGCCCGGCACG
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCGATGCGAAAGCCCGACCACAGCCGAACCAGTCGACTGCGGACG
GCGGCGCTAGGACAGATTTACATGTCCGGCCACAATCTAGGCTCGTTTTGTTCACGCAGTGGGATCCCGTACTTT
ACGCCTCAGGGCGAGCGCTACATCTACACCAAGACCGGACGCTGGCCTGATCTCCATCGACGACGACGACGACGA
GATGAAGTCGTGACAGACTTTCGAAACGCGACGCCACAGCAACAGCTTCCGCGTCCGCCTCGAGGTCCAGCCCCG
GAGCTACCGGATCGACTCGCCGTCCAGACTCTGCTAGCGACCTACCTGGCCTCGGATTTCTCTCTGGTTTTCCCC
CTGGTTGACGGCGTTTTGTTCGAGAGGACCATCGAGTTGGCCTATGATCCGGCGCCGGCTTCGGCTGACGGAGCC
AGTGCTAGGGCTTGCGTTTTCGCCTTCTTGTCCATTGCTAGCTCTCGCTTTCTAGGCGCTCATGTCAAGCTCGTC
GTGGATGGCCATGCTTGTGCTGCCGAGGCCCGGACCTTGTTGGACGACATGTTGGGAAACGTCAACATGACGACG
GTGCAAACGCTTCTCATTCTCCTCACGCACGAAACGTTTTGCGGACGACTTCAAGCCGCCTCCATGTATCACGCC
GTCGCCTGCCGCGCCCTCTTCAACCTCGACGCCCACGTCCTCGTCAACGACCGAGGCTGGAACGAGGCTCAGTCG
CGAGAACATCGCCAGCTACGCGTCTTGTTCTGGTTCAGCTACGTGTTCGACAAGGACGTGGCGCTCTGTACCGGA
AGACCTCCCGTCATCGACGATGAATTCTGTGACCTCACTTTACCCGCCTGGTGTGACCATGGACGTTTCGCCGCC
ACCACGACGACGACGACGACGACGACCATGACAAACGTCTTGGTCGTCGTCGATGACGGAGCCGGCGGCGGCGGC
GGCCGTTCGCCTTGGTTTCCGGGGGATTTACGGCTTAGCGTTTTGAAGTCTCGTGCTTGTCGTTTGCTCTACTCG
GCTTCCTCCCTTGGTCAACCAGATGCCGAACTGCTACGGACGATTCGTGAGCTAGACGAAGCTCTCGAACATTGG
CGTCTCTCCCTCCCCTCGGCCTTTTCCCCTTCTCTTTCTCCCGCTTCGTCCGACGGACTGGGCACGTCGCGAAGT
ATGCTTCACATGGAGTTGCATCTACACTACTACTACCTCGTCAACGTCATCCACGCCGCCGCCGGCCGCTGCGCC
GTCGACGGACTCATCTCCGCACCCGAGCCCGGCGTCCGGTCAAGTCTCGAGCTATCCGTTCAAGCGAGCCGATCA
ACCTTGTTGTATTTACGGGCCACCTCCCACCGACTCATCAGCGACGGCTTCTGGCTCTTCATCTTTTATCCCATG
TCCGCTCTCGTCACCCTCTTTTTCAACGTTTTACGCGATCCCCTTCATCCTCAGGCCGCCCGAGATGTCGACCTG
TTATCCTCGGCCGAGGAGGTCATCAAGACGATGCCGGTGGGGGGCATCACCGCTCGTGAGTTGGCCTACCTGAAC
GAGGTGGATGATTTTGTCGCCGAGTTGGGGCAGTTGGCGAGGTGTGCTCTTGTCCAGGGGGGTTGGTGA
Gene >Ophio5|6586
ATGCCTGCTATAAGCGCAAGGCATGACGAGCCAAAAACCCCCCAAACCCCAAGCAATCGGCTTACCCTCGGCTCA
CTTCCCCCCCCCCCCGGGTCCCGGCCCCTCTCCTTCGTCCAGATCCAATGCGATGCCGTAGAAACAGGGTCTCGG
TGTGACTGGTGCCGACATCACAGCCTACCCTGCACCTTCATCCGAACGACCGCCTCACGACCTCGGCCCGGCACG
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCGATGCGAAAGCCCGACCACAGCCGAACCAGTCGACTGCGGACG
GCGGCGCTAGGACAGATTTACATGTCCGGCCACAATCTAGGCTCGTTTTGTTCACGCAGTGGGATCCCGTACTTT
ACGCCTCAGGGCGAGCGCTACATCTACACCAAGACCGGACGCTGGCCTGATCTCCATCGACGACGACGACGACGA
GATGAAGTCGTGACAGACTTTCGAAACGCGACGCCACAGCAACAGCTTCCGCGTCCGCCTCGAGGTCCAGCCCCG
GAGCTACCGGATCGACTCGCCGTCCAGACTCTGCTAGCGACCTACCTGGCCTCGGATTTCTCTCTGGTTTTCCCC
CTGGTTGACGGCGTTTTGTTCGAGAGGACCATCGAGTTGGCCTATGATCCGGCGCCGGCTTCGGCTGACGGAGCC
AGTGCTAGGGCTTGCGTTTTCGCCTTCTTGTCCATTGCTAGCTCTCGCTTTCTAGGCGCTCATGTCAAGCTCGTC
GTGGATGGCCATGCTTGTGCTGCCGAGGCCCGGACCTTGTTGGACGACATGTTGGGAAACGTCAACATGACGACG
GTGCAAACGCTTCTCATTCTCGTCAGTTTCCCCCTCCCCCCCCCCTTGGCCTCTTCCCCCTATTGTCGTACATGA
CTCGACACACAAGAAGCGCCGAAATTTATATATATATATAAAAAAAGAAAGAAAAAAAAAGAAAAGGAGAGAGAT
TTTTCTAATGGATAAAAAAAAAAACCAGCTCACGCACGAAACGTTTTGCGGACGACTTCAAGCCGCCTCCATGTA
TCACGCCGTCGCCTGCCGCGCCCTCTTCAACCTCGACGCCCACGTCCTCGTCAACGACCGAGGCTGGAACGAGGC
TCAGTCGCGAGAACATCGCCAGCTACGCGTCTTGTTCTGGTTCAGCTACGTGTTCGACAAGGACGTGGCGCTCTG
TACCGGAAGACCTCCCGTCATCGACGATGAATTCTGTGACCTCACTTTACCCGCCTGGTGTGACCATGGACGTTT
CGCCGCCACCACGACGACGACGACGACGACGACCATGACAAACGTCTTGGTCGTCGTCGATGACGGAGCCGGCGG
CGGCGGCGGCCGTTCGCCTTGGTTTCCGGGGGATTTACGGCTTAGCGTTTTGAAGTCTCGTGCTTGTCGTTTGCT
CTACTCGGCTTCCTCCCTTGGTCAACCAGATGCCGAACTGCTACGGACGATTCGTGAGCTAGACGAAGCTCTCGA
ACATTGGCGTCTCTCCCTCCCCTCGGCCTTTTCCCCTTCTCTTTCTCCCGCTTCGTCCGACGGACTGGGCACGTC
GCGAAGTATGCTTCACATGGAGTTGCATCTACACTACTACTACCTCGTCAACGTCATCCACGCCGCCGCCGGCCG
CTGCGCCGTCGACGGACTCATCTCCGCACCCGAGCCCGGCGTCCGGTCAAGTCTCGAGCTATCCGTTCAAGCGAG
CCGATCAACCTTGTTGTATTTACGGGCCACCTCCCACCGACTCATCAGCGACGGCTTCTGGCTCTTCATCTTTTA
TCCCATGTCCGCTCTCGTCACCCTCTTTTTCAACGTTTTACGCGATCCCCTTCATCCTCAGGCCGCCCGAGATGT
CGACCTGTTATCCTCGGCCGAGGAGGTCATCAAGACGATGCCGGTGGGGGGCATCACCGCTCGTGAGTTGGCCTA
CCTGAACGAGGTGGATGATTTTGTCGCCGAGTTGGGGCAGTTGGCGAGGTGTGCTCTTGTCCAGGGGGGTTGGTG
A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail