Fungal Genomics

General Properties

Protein ID	Ophio5|6582
Gene name
Location	scaffold_585:5104..5368
Strand	-
Gene length (bp)	264
Transcript length (bp)	264
Coding sequence length (bp)	261
Protein length (aa)	87

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Cell membrane	Signal peptide|Transmembrane domain	0.1974	0.186	0.2566	0.557	0.1441	0.0085	0.3939	0.442	0.2142	0.0098

SignalP

(None)

Transmembrane Domains

Domain #	Start	End	Length
1	15	37	22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	10.94	0.0	22.31
CcL	In ants, during behavior modification	3.30	0.0	8.99
CcD	In ants, recently dead	5.47	0.0	13.02

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.118017	no
SC16a	CcD	0.248839	no
CcL	CcD	0.542421	no

Orthologs

Orthofinder run ID	4
Orthogroup	16206
Change Orthofinder run	4: Insect Pathogens

Species	Protein ID
Ophiocordyceps kimflemingae	Ophio5|6582 (this protein)

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5|6582 MPLIPRHQDGLSEAHVIFIVFSIFCAVALVAILFWHRAHANTIRRRRRNRRCSRHAHAANVTPAAAATAAASMPA ADPPVASAPTDG
Coding	>Ophio5|6582 ATGCCGCTCATCCCCCGGCACCAAGACGGCCTCTCGGAAGCGCACGTCATCTTCATCGTATTCTCCATCTTCTGC GCCGTCGCCCTCGTCGCCATCCTCTTCTGGCACCGCGCTCACGCCAATACGATACGCAGGCGTAGGCGCAACAGA CGCTGCTCGCGACACGCACACGCCGCCAACGTCACCCCGGCCGCTGCCGCTACCGCTGCCGCGTCCATGCCTGCC GCCGATCCGCCTGTTGCTTCGGCGCCGACGGACGGC
Transcript	>Ophio5|6582 ATGCCGCTCATCCCCCGGCACCAAGACGGCCTCTCGGAAGCGCACGTCATCTTCATCGTATTCTCCATCTTCTGC GCCGTCGCCCTCGTCGCCATCCTCTTCTGGCACCGCGCTCACGCCAATACGATACGCAGGCGTAGGCGCAACAGA CGCTGCTCGCGACACGCACACGCCGCCAACGTCACCCCGGCCGCTGCCGCTACCGCTGCCGCGTCCATGCCTGCC GCCGATCCGCCTGTTGCTTCGGCGCCGACGGACGGCTGA
Gene	>Ophio5|6582 ATGCCGCTCATCCCCCGGCACCAAGACGGCCTCTCGGAAGCGCACGTCATCTTCATCGTATTCTCCATCTTCTGC GCCGTCGCCCTCGTCGCCATCCTCTTCTGGCACCGCGCTCACGCCAATACGATACGCAGGCGTAGGCGCAACAGA CGCTGCTCGCGACACGCACACGCCGCCAACGTCACCCCGGCCGCTGCCGCTACCGCTGCCGCGTCCATGCCTGCC GCCGATCCGCCTGTTGCTTCGGCGCCGACGGACGGCTGA