© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6560 |
| Gene name | |
| Location | scaffold_580:6675..8086 |
| Strand | - |
| Gene length (bp) | 1411 |
| Transcript length (bp) | 1278 |
| Coding sequence length (bp) | 1275 |
| Protein length (aa) | 425 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06728 | PIG-U | GPI transamidase subunit PIG-U | 4.0E-124 | 12 | 390 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9H490|PIGU_HUMAN | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Homo sapiens GN=PIGU PE=1 SV=3 | 26 | 410 | 1.0E-71 |
| sp|Q8CHJ1|PIGU_RAT | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Rattus norvegicus GN=Pigu PE=1 SV=3 | 26 | 410 | 2.0E-71 |
| sp|Q8K358|PIGU_MOUSE | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Mus musculus GN=Pigu PE=1 SV=4 | 26 | 410 | 1.0E-70 |
| sp|Q8CHJ0|PIGU_CRIGR | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Cricetulus griseus GN=PIGU PE=1 SV=3 | 26 | 410 | 1.0E-70 |
| sp|P41733|CDC91_YEAST | GPI transamidase component GAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAB1 PE=1 SV=1 | 16 | 425 | 5.0E-58 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9H490|PIGU_HUMAN | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Homo sapiens GN=PIGU PE=1 SV=3 | 26 | 410 | 1.0E-71 |
| sp|Q8CHJ1|PIGU_RAT | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Rattus norvegicus GN=Pigu PE=1 SV=3 | 26 | 410 | 2.0E-71 |
| sp|Q8K358|PIGU_MOUSE | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Mus musculus GN=Pigu PE=1 SV=4 | 26 | 410 | 1.0E-70 |
| sp|Q8CHJ0|PIGU_CRIGR | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Cricetulus griseus GN=PIGU PE=1 SV=3 | 26 | 410 | 1.0E-70 |
| sp|P41733|CDC91_YEAST | GPI transamidase component GAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAB1 PE=1 SV=1 | 16 | 425 | 5.0E-58 |
| sp|O13883|PIGU_SCHPO | GPI transamidase component GAB1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1952.01 PE=3 SV=2 | 29 | 425 | 1.0E-54 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 24 | 17 |
| 2 | 85 | 107 | 22 |
| 3 | 128 | 150 | 22 |
| 4 | 177 | 199 | 22 |
| 5 | 220 | 242 | 22 |
| 6 | 280 | 302 | 22 |
| 7 | 309 | 331 | 22 |
| 8 | 351 | 373 | 22 |
| 9 | 380 | 398 | 18 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 57.92 | 31.86 | 83.99 |
| CcL | In ants, during behavior modification | 90.98 | 46.40 | 135.56 |
| CcD | In ants, recently dead | 87.12 | 47.65 | 126.58 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.061231 | no |
| SC16a | CcD | 0.075303 | no |
| CcL | CcD | 0.881379 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6560 MTLRGKAGVYAAAALLRLVLTLVFPGLPDLLTGRVEISTPMTSFKRLQEGLFLYNHNVSPYDGGVYHQAPLLLPL FSLLPDAKRWPIFTTVLYILVDILCADALVSIADSGEAGQSRLFTSPRRARRASGLFVAAAFLFNPFTIATCIAR STNVFTSCAILHAIARAVRGSPFSALVALSFAAYLSMSPLLLLPPLVLLAWDRRPERRGGGGGSPSVADFAAKCV LTVAACLAVLVAMSLVVTGNSSDFLARTYGIQLTLTDLTPNVGLWWYFFIEMFDSFRAFFLAVFWLHLSSYVGGL TIRFRSQPLVVLTLLLGILAIFKPYPCIADTSLFLAMLPLFWHLFPLMRYTFVASATILYATFLGPAFYHLWIYA GSGNANFFYAITLVWSLGQSLLVSDLAFAVIRDEWEVDRPEMVGKDVKQI |
| Coding | >Ophio5|6560 ATGACCCTGCGAGGCAAGGCCGGCGTCTACGCCGCCGCGGCCCTCTTGCGACTCGTTCTGACGCTCGTCTTTCCG GGCCTGCCTGACCTACTGACCGGCCGCGTCGAGATCTCGACGCCCATGACGAGCTTCAAGCGACTTCAGGAAGGC TTGTTTCTTTACAATCACAACGTCTCGCCCTACGATGGCGGAGTCTATCATCAGGCGCCTCTGCTCCTCCCGCTC TTCTCGCTGCTCCCCGACGCCAAGCGCTGGCCCATCTTCACCACGGTGCTATACATCCTGGTCGATATCCTCTGC GCTGATGCCCTGGTGAGCATTGCCGACTCGGGTGAGGCCGGCCAGTCGCGGCTCTTTACGTCGCCTCGCCGCGCC CGTCGCGCATCCGGTCTCTTTGTCGCCGCCGCCTTCCTGTTCAACCCCTTCACCATCGCCACGTGCATTGCCCGC TCCACAAACGTCTTCACCTCGTGCGCCATCCTCCACGCCATCGCCAGGGCCGTCCGCGGCTCGCCCTTCAGCGCC CTCGTGGCCCTCTCCTTCGCCGCCTATCTTTCCATGTCTCCGCTGCTGCTCCTCCCGCCACTCGTCCTCCTGGCC TGGGATCGACGTCCCGAGAGGCGCGGCGGCGGCGGCGGCTCGCCGTCCGTCGCCGACTTCGCCGCCAAGTGCGTC CTCACCGTGGCCGCCTGTCTCGCCGTCCTCGTGGCCATGTCTCTCGTCGTCACCGGCAACTCGTCCGACTTCTTG GCCCGTACCTATGGCATTCAGCTCACGCTCACGGACCTGACGCCCAACGTCGGACTCTGGTGGTACTTCTTCATC GAGATGTTCGACTCCTTTCGCGCCTTTTTCCTCGCCGTCTTCTGGCTGCATTTGTCGTCGTACGTCGGCGGCCTC ACCATCCGCTTCCGCTCACAGCCCCTCGTCGTCCTCACCCTCCTGCTCGGCATCCTCGCCATCTTCAAACCTTAC CCCTGCATCGCCGACACCAGCCTCTTCCTGGCCATGCTGCCGCTCTTCTGGCACTTATTTCCCCTCATGCGCTAC ACTTTTGTCGCCTCCGCCACCATACTGTATGCCACCTTTCTCGGCCCGGCCTTTTACCACCTCTGGATCTACGCC GGCAGCGGCAACGCAAACTTTTTTTACGCCATCACCTTGGTTTGGAGTCTGGGCCAGAGTCTGCTCGTGTCCGAT CTGGCTTTCGCCGTCATCAGAGATGAGTGGGAGGTGGACAGGCCTGAAATGGTGGGAAAGGATGTGAAGCAGATC |
| Transcript | >Ophio5|6560 ATGACCCTGCGAGGCAAGGCCGGCGTCTACGCCGCCGCGGCCCTCTTGCGACTCGTTCTGACGCTCGTCTTTCCG GGCCTGCCTGACCTACTGACCGGCCGCGTCGAGATCTCGACGCCCATGACGAGCTTCAAGCGACTTCAGGAAGGC TTGTTTCTTTACAATCACAACGTCTCGCCCTACGATGGCGGAGTCTATCATCAGGCGCCTCTGCTCCTCCCGCTC TTCTCGCTGCTCCCCGACGCCAAGCGCTGGCCCATCTTCACCACGGTGCTATACATCCTGGTCGATATCCTCTGC GCTGATGCCCTGGTGAGCATTGCCGACTCGGGTGAGGCCGGCCAGTCGCGGCTCTTTACGTCGCCTCGCCGCGCC CGTCGCGCATCCGGTCTCTTTGTCGCCGCCGCCTTCCTGTTCAACCCCTTCACCATCGCCACGTGCATTGCCCGC TCCACAAACGTCTTCACCTCGTGCGCCATCCTCCACGCCATCGCCAGGGCCGTCCGCGGCTCGCCCTTCAGCGCC CTCGTGGCCCTCTCCTTCGCCGCCTATCTTTCCATGTCTCCGCTGCTGCTCCTCCCGCCACTCGTCCTCCTGGCC TGGGATCGACGTCCCGAGAGGCGCGGCGGCGGCGGCGGCTCGCCGTCCGTCGCCGACTTCGCCGCCAAGTGCGTC CTCACCGTGGCCGCCTGTCTCGCCGTCCTCGTGGCCATGTCTCTCGTCGTCACCGGCAACTCGTCCGACTTCTTG GCCCGTACCTATGGCATTCAGCTCACGCTCACGGACCTGACGCCCAACGTCGGACTCTGGTGGTACTTCTTCATC GAGATGTTCGACTCCTTTCGCGCCTTTTTCCTCGCCGTCTTCTGGCTGCATTTGTCGTCGTACGTCGGCGGCCTC ACCATCCGCTTCCGCTCACAGCCCCTCGTCGTCCTCACCCTCCTGCTCGGCATCCTCGCCATCTTCAAACCTTAC CCCTGCATCGCCGACACCAGCCTCTTCCTGGCCATGCTGCCGCTCTTCTGGCACTTATTTCCCCTCATGCGCTAC ACTTTTGTCGCCTCCGCCACCATACTGTATGCCACCTTTCTCGGCCCGGCCTTTTACCACCTCTGGATCTACGCC GGCAGCGGCAACGCAAACTTTTTTTACGCCATCACCTTGGTTTGGAGTCTGGGCCAGAGTCTGCTCGTGTCCGAT CTGGCTTTCGCCGTCATCAGAGATGAGTGGGAGGTGGACAGGCCTGAAATGGTGGGAAAGGATGTGAAGCAGATC TAG |
| Gene | >Ophio5|6560 ATGACCCTGCGAGGCAAGGCCGGCGTCTACGCCGCCGCGGCCCTCTTGCGACTCGTTCTGACGCTCGTCTTTCCG GGCCTGCCTGACCTACTGACCGGCCGCGTCGAGATCTCGACGCCCATGACGAGCTTCAAGCGACGTGAGGCCTCC CCTCCTCTTCCTGATCATTCCTCGCTGAAACACGCTCTAGTTCAGGAAGGCTTGTTTCTTTACAATCACAACGTC TCGCCCTACGATGGCGGAGTCTATCATCAGGCGCCTCTGCTCCTCCCGCTCTTCTCGCTGCTCCCCGACGCCAAG CGCTGGCCCATCTTCACCACGGTGCTATACATCCTGGTCGATATCCTCTGCGCTGATGCCCTGGTGAGCATTGCC GACTCGGGTGAGGCCGGCCAGTCGCGGCTCTTTACGTCGCCTCGCCGCGCCCGTCGCGCATCCGGTCTCTTTGTC GCCGCCGCGTGAGTCCTTTGCTTCCCCCCACCCGGGCATCATGCCTCCTTGATCCCTCAGGCTGAACGCATTAAA AAAAAAAAAAAAAAGCTTCCTGTTCAACCCCTTCACCATCGCCACGTGCATTGCCCGCTCCACAAACGTCTTCAC CTCGTGCGCCATCCTCCACGCCATCGCCAGGGCCGTCCGCGGCTCGCCCTTCAGCGCCCTCGTGGCCCTCTCCTT CGCCGCCTATCTTTCCATGTCTCCGCTGCTGCTCCTCCCGCCACTCGTCCTCCTGGCCTGGGATCGACGTCCCGA GAGGCGCGGCGGCGGCGGCGGCTCGCCGTCCGTCGCCGACTTCGCCGCCAAGTGCGTCCTCACCGTGGCCGCCTG TCTCGCCGTCCTCGTGGCCATGTCTCTCGTCGTCACCGGCAACTCGTCCGACTTCTTGGCCCGTACCTATGGCAT TCAGCTCACGCTCACGGACCTGACGCCCAACGTCGGACTCTGGTGGTACTTCTTCATCGAGATGTTCGACTCCTT TCGCGCCTTTTTCCTCGCCGTCTTCTGGCTGCATTTGTCGTCGTACGTCGGCGGCCTCACCATCCGCTTCCGCTC ACAGCCCCTCGTCGTCCTCACCCTCCTGCTCGGCATCCTCGCCATCTTCAAACCTTACCCCTGCATCGCCGACAC CAGCCTCTTCCTGGCCATGCTGCCGCTCTTCTGGCACTTATTTCCCCTCATGCGCTACACTTTTGTCGCCTCCGC CACCATACTGTATGCCACCTTTCTCGGCCCGGCCTTTTACCACCTCTGGATCTACGCCGGCAGCGGCAACGCAAA CTTTTTTTACGCCATCACCTTGGTTTGGAGTCTGGGCCAGAGTCTGCTCGTGTCCGATCTGGCTTTCGCCGTCAT CAGAGATGAGTGGGAGGTGGACAGGCCTGAAATGGTGGGAAAGGATGTGAAGCAGATCTAG |