Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|6559
Gene name
Location	scaffold_580:5101..6456
Strand	+
Gene length (bp)	1355
Transcript length (bp)	1209
Coding sequence length (bp)	1206
Protein length (aa)	402

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF10568	Tom37	Outer mitochondrial membrane transport complex protein	5.0E-34	22	143

Swissprot hits

[Show all]

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9UUA5\|MTXL_SCHPO	Metaxin-like protein C409.19c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC409.19c PE=3 SV=1	4	285	2.0E-20
sp\|P47802\|MTX1_MOUSE	Metaxin-1 OS=Mus musculus GN=Mtx1 PE=1 SV=1	3	153	6.0E-09
sp\|Q27HK4\|MTX1_PIG	Metaxin-1 OS=Sus scrofa GN=MTX1 PE=2 SV=1	3	153	2.0E-08
sp\|Q2TBS1\|MTX1_BOVIN	Metaxin-1 OS=Bos taurus GN=MTX1 PE=2 SV=1	3	153	3.0E-08
sp\|Q13505\|MTX1_HUMAN	Metaxin-1 OS=Homo sapiens GN=MTX1 PE=1 SV=2	3	265	4.0E-08

[Show all]

[Show less]

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9UUA5\|MTXL_SCHPO	Metaxin-like protein C409.19c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC409.19c PE=3 SV=1	4	285	2.0E-20
sp\|P47802\|MTX1_MOUSE	Metaxin-1 OS=Mus musculus GN=Mtx1 PE=1 SV=1	3	153	6.0E-09
sp\|Q27HK4\|MTX1_PIG	Metaxin-1 OS=Sus scrofa GN=MTX1 PE=2 SV=1	3	153	2.0E-08
sp\|Q2TBS1\|MTX1_BOVIN	Metaxin-1 OS=Bos taurus GN=MTX1 PE=2 SV=1	3	153	3.0E-08
sp\|Q13505\|MTX1_HUMAN	Metaxin-1 OS=Homo sapiens GN=MTX1 PE=1 SV=2	3	265	4.0E-08
sp\|Q4R3I0\|MTX1_MACFA	Metaxin-1 OS=Macaca fascicularis GN=MTX1 PE=2 SV=1	3	153	8.0E-08
sp\|Q4VBW0\|MTX3_DANRE	Metaxin-3 OS=Danio rerio GN=mtx3 PE=2 SV=2	3	150	3.0E-07

[Show less]

GO

GO Term	Description	Terminal node
GO:0001401	SAM complex	Yes
GO:0098796	membrane protein complex	No
GO:0032991	protein-containing complex	No
GO:0005575	cellular_component	No
GO:0098798	mitochondrial protein-containing complex	No
GO:0005742	mitochondrial outer membrane translocase complex	No
GO:0098799	outer mitochondrial membrane protein complex	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 21	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	42.85	21.99	63.71
CcL	In ants, during behavior modification	115.86	62.54	169.18
CcD	In ants, recently dead	91.30	49.82	132.79

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.000770	yes
CcL	CcD	0.319891	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|6559 MVPLELHVWGPALGLASIDAECLAAIAYFRNALPDSRWHLIPSSDPSLNPHHRLPSLHHDGVWVSGYRQIVDHLA PLADLDRHLTADHQAHVAGLSAFLSDHASSLVDLSLYVSAANWSATTRPAYSAILPFPLTWTLPPLIRAEAISRV HHLGLAELDPDLASSPGHFRSLNVGRDALPEALRKRVPITTTTTVRHEMTPEQATAIRLSALVNDCLSVLERLLE SSTSSHFLPHSEASVSSLDCLAYGYLALMLKPDVPRAFLRDWFLARGPRLTEFIDVMTPTELPWLTPEPSHRTLI GYGVRFFDSVIRNIPTLGDLYADEVRLRARRGIRGLDRRMLTLVAGLTAAGLAVGCAFHAYRSLQPFGAASQVWR CGRAGTKLSRVHAARAGRGGALESGVD
Coding	>Ophio5\|6559 ATGGTGCCGCTGGAGCTCCATGTCTGGGGCCCGGCTTTGGGCCTCGCCTCTATCGACGCCGAGTGCCTCGCGGCC ATCGCCTATTTCCGAAACGCCTTGCCCGACTCCCGCTGGCATCTAATTCCAAGCAGCGATCCGTCTCTCAACCCG CATCATCGTCTTCCGTCGCTGCATCATGACGGCGTCTGGGTGAGCGGCTATCGCCAAATCGTCGACCATCTCGCA CCTTTGGCCGACTTGGACCGTCACCTCACCGCCGACCACCAGGCTCATGTCGCCGGCCTTTCCGCCTTCTTGTCT GATCATGCGTCGTCCCTTGTCGATCTTTCCCTCTATGTCTCGGCCGCAAACTGGTCGGCCACCACTCGGCCCGCC TACAGCGCCATTCTCCCCTTCCCCCTGACCTGGACCCTTCCCCCTTTGATCCGCGCCGAGGCAATCAGCCGCGTC CATCACCTGGGGCTCGCCGAGCTCGACCCCGACTTGGCTTCGAGCCCCGGCCACTTTCGTTCACTTAATGTCGGT CGAGATGCCCTCCCCGAGGCATTGCGGAAACGGGTGCCCATCACGACGACCACTACGGTCCGTCACGAGATGACA CCGGAACAGGCTACTGCCATCAGGCTCTCGGCCCTCGTCAACGATTGTCTCTCCGTCTTGGAGCGTCTGCTGGAA AGCAGTACATCTTCTCACTTCCTCCCTCATTCCGAGGCCTCTGTATCCTCCCTCGACTGCCTAGCCTACGGCTAC CTCGCGCTGATGCTCAAGCCCGACGTGCCGCGTGCCTTCTTGCGTGATTGGTTTCTCGCCCGCGGTCCGCGACTG ACGGAATTCATTGACGTCATGACGCCGACAGAACTGCCGTGGCTCACGCCGGAACCCTCTCACCGTACTTTGATC GGTTACGGCGTCCGCTTTTTTGACTCCGTCATCCGCAACATCCCCACGCTCGGCGACCTCTATGCCGACGAGGTC AGGCTGCGCGCAAGACGGGGGATTCGAGGTCTGGATCGCAGGATGCTGACTCTGGTGGCGGGCCTCACCGCGGCG GGCCTGGCCGTCGGATGCGCCTTCCACGCGTACAGGTCGCTTCAGCCCTTCGGCGCCGCCTCCCAAGTGTGGAGG TGCGGCCGAGCGGGGACCAAGCTGAGTCGCGTCCATGCCGCCCGTGCCGGCCGGGGCGGGGCGCTTGAATCCGGG GTAGAC
Transcript	>Ophio5\|6559 ATGGTGCCGCTGGAGCTCCATGTCTGGGGCCCGGCTTTGGGCCTCGCCTCTATCGACGCCGAGTGCCTCGCGGCC ATCGCCTATTTCCGAAACGCCTTGCCCGACTCCCGCTGGCATCTAATTCCAAGCAGCGATCCGTCTCTCAACCCG CATCATCGTCTTCCGTCGCTGCATCATGACGGCGTCTGGGTGAGCGGCTATCGCCAAATCGTCGACCATCTCGCA CCTTTGGCCGACTTGGACCGTCACCTCACCGCCGACCACCAGGCTCATGTCGCCGGCCTTTCCGCCTTCTTGTCT GATCATGCGTCGTCCCTTGTCGATCTTTCCCTCTATGTCTCGGCCGCAAACTGGTCGGCCACCACTCGGCCCGCC TACAGCGCCATTCTCCCCTTCCCCCTGACCTGGACCCTTCCCCCTTTGATCCGCGCCGAGGCAATCAGCCGCGTC CATCACCTGGGGCTCGCCGAGCTCGACCCCGACTTGGCTTCGAGCCCCGGCCACTTTCGTTCACTTAATGTCGGT CGAGATGCCCTCCCCGAGGCATTGCGGAAACGGGTGCCCATCACGACGACCACTACGGTCCGTCACGAGATGACA CCGGAACAGGCTACTGCCATCAGGCTCTCGGCCCTCGTCAACGATTGTCTCTCCGTCTTGGAGCGTCTGCTGGAA AGCAGTACATCTTCTCACTTCCTCCCTCATTCCGAGGCCTCTGTATCCTCCCTCGACTGCCTAGCCTACGGCTAC CTCGCGCTGATGCTCAAGCCCGACGTGCCGCGTGCCTTCTTGCGTGATTGGTTTCTCGCCCGCGGTCCGCGACTG ACGGAATTCATTGACGTCATGACGCCGACAGAACTGCCGTGGCTCACGCCGGAACCCTCTCACCGTACTTTGATC GGTTACGGCGTCCGCTTTTTTGACTCCGTCATCCGCAACATCCCCACGCTCGGCGACCTCTATGCCGACGAGGTC AGGCTGCGCGCAAGACGGGGGATTCGAGGTCTGGATCGCAGGATGCTGACTCTGGTGGCGGGCCTCACCGCGGCG GGCCTGGCCGTCGGATGCGCCTTCCACGCGTACAGGTCGCTTCAGCCCTTCGGCGCCGCCTCCCAAGTGTGGAGG TGCGGCCGAGCGGGGACCAAGCTGAGTCGCGTCCATGCCGCCCGTGCCGGCCGGGGCGGGGCGCTTGAATCCGGG GTAGACTAG
Gene	>Ophio5\|6559 ATGGTGCCGCTGGAGCTCCATGTCTGGGGCCCGGCTTTGGGCCTCGCCTCTATCGACGCCGAGTGCCTCGCGGCC ATCGCCTATTTCCGAAACGCCTTGCCCGACTCCCGCTGGCATCTAATTCCAAGCAGCGATCCGTCTCTCAACCCG CATCGTATGTCTGAATTTTTTTTTTATTTTTTCCCCTCCCCATCCCATCACTTGACATCCCCCATGCCACAACCC CGCGTGACGCGTGCTGACCGGCAAGATCGTCTTCCGTCGCTGCATCATGACGGCGTCTGGGTGAGCGGCTATCGC CAAATCGTCGACCATCTCGCACCTTTGGCCGACTTGGACCGTCACCTCACCGCCGACCACCAGGCTCATGTCGCC GGCCTTTCCGCCTTCTTGTCTGATCATGCGTCGTCCCTTGTCGATCTTTCCCTCTATGTCTCGGCCGCAAACTGG TCGGCCACCACTCGGCCCGCCTACAGCGCCATTCTCCCCTTCCCCCTGACCTGGACCCTTCCCCCTTTGATCCGC GCCGAGGCAATCAGCCGCGTCCATCACCTGGGGCTCGCCGAGCTCGACCCCGACTTGGCTTCGAGCCCCGGCCAC TTTCGTTCACTTAATGTCGGTCGAGATGCCCTCCCCGAGGCATTGCGGAAACGGGTGCCCATCACGACGACCACT ACGGTCCGTCACGAGATGACACCGGAACAGGCTACTGCCATCAGGCTCTCGGCCCTCGTCAACGATTGTCTCTCC GTCTTGGAGCGTCTGCTGGAAAGCAGTACATCTTCTCACTTCCTCCCTCATTCCGAGGCCTCTGTATCCTCCCTC GACTGCCTAGCCTACGGCTACCTCGCGCTGATGCTCAAGCCCGACGTGCCGCGTGCCTTCTTGCGTGATTGGTTT CTCGCCCGCGGTCCGCGACTGACGGAATTCATTGACGTCATGACGCCGACAGAACTGCCGTGGCTCACGCCGGAA CCCTCTCACCGTACTTTGATCGGTTACGGCGTCCGCTTTTTTGACTCCGTCATCCGCAACATCCCCACGCTCGGC GACCTCTATGCCGACGAGGTCAGGCTGCGCGCAAGACGGGGGATTCGAGGTCTGGATCGCAGGATGCTGACTCTG GTGGCGGGCCTCACCGCGGCGGGCCTGGCCGTCGGATGCGCCTTCCACGCGTACAGGTCGCTTCAGCCCTTCGGC GCCGCCTCCCAAGTGTGGAGGTGCGGCCGAGCGGGGACCAAGCTGAGGTATGGAGAAGTCGGGTCATTGTTGGGC GGAGCACTGGGGCTCTATCAAGTCGCGTCCATGCCGCCCGTGCCGGCCGGGGCGGGGCGCTTGAATCCGGGGTAG ACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail