© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6548 |
| Gene name | |
| Location | scaffold_58:29138..30902 |
| Strand | - |
| Gene length (bp) | 1764 |
| Transcript length (bp) | 1764 |
| Coding sequence length (bp) | 1761 |
| Protein length (aa) | 587 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00443 | UCH | Ubiquitin carboxyl-terminal hydrolase | 3.1E-35 | 44 | 420 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CAQ1|UBP16_EMENI | Ubiquitin carboxyl-terminal hydrolase 16 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ubp16 PE=3 SV=1 | 2 | 586 | 3.0E-164 |
| sp|Q02863|UBP16_YEAST | Ubiquitin carboxyl-terminal hydrolase 16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBP16 PE=1 SV=1 | 12 | 416 | 7.0E-28 |
| sp|Q9QZL6|UBP21_MOUSE | Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21 PE=1 SV=1 | 44 | 428 | 1.0E-18 |
| sp|B2GUX4|UBP21_RAT | Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus GN=Usp21 PE=2 SV=1 | 44 | 428 | 7.0E-18 |
| sp|Q9UK80|UBP21_HUMAN | Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21 PE=1 SV=1 | 44 | 428 | 1.0E-17 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CAQ1|UBP16_EMENI | Ubiquitin carboxyl-terminal hydrolase 16 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ubp16 PE=3 SV=1 | 2 | 586 | 3.0E-164 |
| sp|Q02863|UBP16_YEAST | Ubiquitin carboxyl-terminal hydrolase 16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBP16 PE=1 SV=1 | 12 | 416 | 7.0E-28 |
| sp|Q9QZL6|UBP21_MOUSE | Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21 PE=1 SV=1 | 44 | 428 | 1.0E-18 |
| sp|B2GUX4|UBP21_RAT | Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus GN=Usp21 PE=2 SV=1 | 44 | 428 | 7.0E-18 |
| sp|Q9UK80|UBP21_HUMAN | Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21 PE=1 SV=1 | 44 | 428 | 1.0E-17 |
| sp|Q2KJ72|UBP21_BOVIN | Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21 PE=2 SV=1 | 44 | 428 | 5.0E-17 |
| sp|P36026|UBP11_YEAST | Ubiquitin carboxyl-terminal hydrolase 11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBP11 PE=3 SV=1 | 29 | 417 | 4.0E-13 |
| sp|P40818|UBP8_HUMAN | Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1 SV=1 | 14 | 411 | 8.0E-12 |
| sp|Q80U87|UBP8_MOUSE | Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1 SV=2 | 14 | 411 | 2.0E-11 |
| sp|Q9HFS7|UBP4_KLULA | Ubiquitin carboxyl-terminal hydrolase 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DOA4 PE=3 SV=1 | 44 | 411 | 7.0E-11 |
| sp|Q70CQ3|UBP30_HUMAN | Ubiquitin carboxyl-terminal hydrolase 30 OS=Homo sapiens GN=USP30 PE=1 SV=1 | 26 | 584 | 1.0E-09 |
| sp|Q9FPS0|UBP27_ARATH | Ubiquitin carboxyl-terminal hydrolase 27 OS=Arabidopsis thaliana GN=UBP27 PE=2 SV=1 | 45 | 412 | 6.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004843 | cysteine-type deubiquitinase activity | Yes |
| GO:0016579 | protein deubiquitination | Yes |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006508 | proteolysis | No |
| GO:0101005 | deubiquitinase activity | No |
| GO:0043412 | macromolecule modification | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008233 | peptidase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0070646 | protein modification by small protein removal | No |
| GO:0016787 | hydrolase activity | No |
| GO:0070647 | protein modification by small protein conjugation or removal | No |
| GO:0019538 | protein metabolic process | No |
| GO:0036211 | protein modification process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0019783 | ubiquitin-like protein peptidase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0008234 | cysteine-type peptidase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6548 MLPDRSVTVVSYAAGASLAAVALIYVFGPTFTIDNDGSRKKTIVGLRNNANDCFINSVLQALAGLGDLRAYLIRE THRRHIEDAAVYQTLVQPEGGVKVEGWKLQGLQMGLVTQGLKDMLDALNERPIAKKSVTPFPFVKVLEAAFKQRI SRQQQDAQEFLQIVAERLKDEYRAGQRARARARSRGLLPDAQGNGARGTEPAGPDQDESESEPNEGFPMEGKYES RLMCQTCHYKTKPREEGFCTITLAVPHVQSTTLNACFDGIFKTEFIDDFKCEMCRLLQAKANLEHELSRSTSPDF RAQAKDSIGKLGMAIETDPEQPPEDVDLGDMRYAPKRRISKTTRMTIFPKILAVHLSRSIYGVGQTTQKNSAKVA FPERLPLGGLSEPHQYKLLGIITHRGGHNSGHYEAFRRQNQSFPYSNANTFQPSEVYSKAPTPVSTPKMKARQAG GSPVASTTDLLSSSGPDGPTAEPPRSLPAEASSSQNAAPAERREGNGDGGSLRSVAASTKSALSKLTAPKQGQDG GGSSSLRSLKTSQTATARRAKKRKPTSDKWWRVSDEKVRETKTSEVLGMQREVYMLFYELDD |
| Coding | >Ophio5|6548 ATGTTGCCCGACCGGTCAGTGACGGTCGTCTCGTACGCCGCCGGCGCCTCCCTCGCCGCCGTCGCCCTCATATAC GTCTTCGGACCGACCTTCACCATCGACAACGACGGCTCCCGCAAGAAGACCATCGTCGGTCTGCGTAACAATGCC AACGACTGCTTCATCAACTCGGTCCTCCAGGCTCTCGCTGGACTGGGCGATCTGCGCGCCTACCTCATCCGCGAA ACCCATCGACGGCACATCGAGGATGCCGCCGTCTACCAGACTCTGGTCCAGCCCGAGGGCGGCGTCAAGGTCGAA GGGTGGAAGCTGCAGGGCTTGCAGATGGGCCTCGTCACCCAGGGACTCAAGGACATGTTGGATGCGCTTAATGAG CGACCCATTGCCAAGAAGTCTGTGACGCCCTTTCCTTTTGTCAAGGTGCTCGAGGCCGCCTTCAAGCAGCGCATA AGTCGGCAACAGCAGGACGCCCAGGAGTTTCTTCAGATTGTCGCCGAGAGGCTCAAGGACGAATACCGCGCCGGC CAGCGCGCACGCGCCCGCGCCCGGAGCCGAGGGCTGCTTCCTGATGCCCAAGGCAACGGGGCGCGCGGGACGGAA CCTGCTGGTCCTGACCAGGACGAGTCCGAGTCGGAGCCGAACGAGGGTTTCCCCATGGAAGGCAAATACGAGTCT CGCCTGATGTGCCAGACCTGCCACTACAAGACGAAGCCGAGAGAGGAGGGCTTCTGCACCATCACGCTGGCCGTG CCGCACGTGCAGTCGACGACACTCAACGCTTGCTTCGATGGCATCTTCAAAACGGAGTTCATCGACGACTTCAAG TGCGAAATGTGTCGCCTCCTCCAGGCCAAGGCCAACCTGGAACACGAGCTCTCCCGGTCGACGTCACCCGACTTC CGGGCGCAGGCCAAGGACAGCATCGGAAAACTTGGCATGGCCATCGAGACGGACCCGGAGCAGCCGCCGGAGGAC GTGGACCTGGGTGACATGCGCTACGCGCCCAAGCGGAGAATCTCCAAGACGACGCGCATGACCATCTTTCCCAAG ATCCTCGCCGTCCACCTCTCGCGGTCCATATATGGCGTCGGACAAACGACGCAAAAGAACTCGGCCAAGGTGGCG TTTCCGGAACGGCTGCCGCTGGGCGGGCTCTCGGAACCGCATCAGTACAAGCTGCTGGGCATCATTACCCACCGA GGCGGCCATAACAGCGGCCACTACGAGGCGTTCCGGCGTCAGAACCAGTCGTTTCCGTATTCCAACGCAAACACT TTTCAGCCGTCCGAGGTGTACAGCAAGGCGCCAACACCCGTGTCGACGCCCAAGATGAAGGCTCGGCAGGCCGGC GGCAGTCCCGTCGCCTCGACGACGGACCTCCTCTCGTCGTCGGGGCCGGACGGGCCGACGGCGGAGCCTCCGCGC AGCCTGCCGGCCGAGGCGAGCTCGTCGCAGAACGCGGCACCGGCCGAGAGGAGGGAAGGGAACGGCGACGGGGGC AGCCTGCGATCCGTGGCCGCGTCCACCAAGTCGGCCCTGTCCAAGCTGACGGCGCCCAAACAAGGGCAGGACGGC GGCGGCTCGTCATCCCTGAGAAGCCTCAAGACATCGCAAACGGCGACGGCTCGTCGGGCCAAGAAGCGCAAGCCG ACGTCGGACAAATGGTGGCGCGTCAGCGACGAAAAAGTGCGCGAGACCAAGACGAGCGAGGTGCTGGGCATGCAA CGGGAGGTGTACATGCTATTCTACGAGTTGGATGAT |
| Transcript | >Ophio5|6548 ATGTTGCCCGACCGGTCAGTGACGGTCGTCTCGTACGCCGCCGGCGCCTCCCTCGCCGCCGTCGCCCTCATATAC GTCTTCGGACCGACCTTCACCATCGACAACGACGGCTCCCGCAAGAAGACCATCGTCGGTCTGCGTAACAATGCC AACGACTGCTTCATCAACTCGGTCCTCCAGGCTCTCGCTGGACTGGGCGATCTGCGCGCCTACCTCATCCGCGAA ACCCATCGACGGCACATCGAGGATGCCGCCGTCTACCAGACTCTGGTCCAGCCCGAGGGCGGCGTCAAGGTCGAA GGGTGGAAGCTGCAGGGCTTGCAGATGGGCCTCGTCACCCAGGGACTCAAGGACATGTTGGATGCGCTTAATGAG CGACCCATTGCCAAGAAGTCTGTGACGCCCTTTCCTTTTGTCAAGGTGCTCGAGGCCGCCTTCAAGCAGCGCATA AGTCGGCAACAGCAGGACGCCCAGGAGTTTCTTCAGATTGTCGCCGAGAGGCTCAAGGACGAATACCGCGCCGGC CAGCGCGCACGCGCCCGCGCCCGGAGCCGAGGGCTGCTTCCTGATGCCCAAGGCAACGGGGCGCGCGGGACGGAA CCTGCTGGTCCTGACCAGGACGAGTCCGAGTCGGAGCCGAACGAGGGTTTCCCCATGGAAGGCAAATACGAGTCT CGCCTGATGTGCCAGACCTGCCACTACAAGACGAAGCCGAGAGAGGAGGGCTTCTGCACCATCACGCTGGCCGTG CCGCACGTGCAGTCGACGACACTCAACGCTTGCTTCGATGGCATCTTCAAAACGGAGTTCATCGACGACTTCAAG TGCGAAATGTGTCGCCTCCTCCAGGCCAAGGCCAACCTGGAACACGAGCTCTCCCGGTCGACGTCACCCGACTTC CGGGCGCAGGCCAAGGACAGCATCGGAAAACTTGGCATGGCCATCGAGACGGACCCGGAGCAGCCGCCGGAGGAC GTGGACCTGGGTGACATGCGCTACGCGCCCAAGCGGAGAATCTCCAAGACGACGCGCATGACCATCTTTCCCAAG ATCCTCGCCGTCCACCTCTCGCGGTCCATATATGGCGTCGGACAAACGACGCAAAAGAACTCGGCCAAGGTGGCG TTTCCGGAACGGCTGCCGCTGGGCGGGCTCTCGGAACCGCATCAGTACAAGCTGCTGGGCATCATTACCCACCGA GGCGGCCATAACAGCGGCCACTACGAGGCGTTCCGGCGTCAGAACCAGTCGTTTCCGTATTCCAACGCAAACACT TTTCAGCCGTCCGAGGTGTACAGCAAGGCGCCAACACCCGTGTCGACGCCCAAGATGAAGGCTCGGCAGGCCGGC GGCAGTCCCGTCGCCTCGACGACGGACCTCCTCTCGTCGTCGGGGCCGGACGGGCCGACGGCGGAGCCTCCGCGC AGCCTGCCGGCCGAGGCGAGCTCGTCGCAGAACGCGGCACCGGCCGAGAGGAGGGAAGGGAACGGCGACGGGGGC AGCCTGCGATCCGTGGCCGCGTCCACCAAGTCGGCCCTGTCCAAGCTGACGGCGCCCAAACAAGGGCAGGACGGC GGCGGCTCGTCATCCCTGAGAAGCCTCAAGACATCGCAAACGGCGACGGCTCGTCGGGCCAAGAAGCGCAAGCCG ACGTCGGACAAATGGTGGCGCGTCAGCGACGAAAAAGTGCGCGAGACCAAGACGAGCGAGGTGCTGGGCATGCAA CGGGAGGTGTACATGCTATTCTACGAGTTGGATGATTAG |
| Gene | >Ophio5|6548 ATGTTGCCCGACCGGTCAGTGACGGTCGTCTCGTACGCCGCCGGCGCCTCCCTCGCCGCCGTCGCCCTCATATAC GTCTTCGGACCGACCTTCACCATCGACAACGACGGCTCCCGCAAGAAGACCATCGTCGGTCTGCGTAACAATGCC AACGACTGCTTCATCAACTCGGTCCTCCAGGCTCTCGCTGGACTGGGCGATCTGCGCGCCTACCTCATCCGCGAA ACCCATCGACGGCACATCGAGGATGCCGCCGTCTACCAGACTCTGGTCCAGCCCGAGGGCGGCGTCAAGGTCGAA GGGTGGAAGCTGCAGGGCTTGCAGATGGGCCTCGTCACCCAGGGACTCAAGGACATGTTGGATGCGCTTAATGAG CGACCCATTGCCAAGAAGTCTGTGACGCCCTTTCCTTTTGTCAAGGTGCTCGAGGCCGCCTTCAAGCAGCGCATA AGTCGGCAACAGCAGGACGCCCAGGAGTTTCTTCAGATTGTCGCCGAGAGGCTCAAGGACGAATACCGCGCCGGC CAGCGCGCACGCGCCCGCGCCCGGAGCCGAGGGCTGCTTCCTGATGCCCAAGGCAACGGGGCGCGCGGGACGGAA CCTGCTGGTCCTGACCAGGACGAGTCCGAGTCGGAGCCGAACGAGGGTTTCCCCATGGAAGGCAAATACGAGTCT CGCCTGATGTGCCAGACCTGCCACTACAAGACGAAGCCGAGAGAGGAGGGCTTCTGCACCATCACGCTGGCCGTG CCGCACGTGCAGTCGACGACACTCAACGCTTGCTTCGATGGCATCTTCAAAACGGAGTTCATCGACGACTTCAAG TGCGAAATGTGTCGCCTCCTCCAGGCCAAGGCCAACCTGGAACACGAGCTCTCCCGGTCGACGTCACCCGACTTC CGGGCGCAGGCCAAGGACAGCATCGGAAAACTTGGCATGGCCATCGAGACGGACCCGGAGCAGCCGCCGGAGGAC GTGGACCTGGGTGACATGCGCTACGCGCCCAAGCGGAGAATCTCCAAGACGACGCGCATGACCATCTTTCCCAAG ATCCTCGCCGTCCACCTCTCGCGGTCCATATATGGCGTCGGACAAACGACGCAAAAGAACTCGGCCAAGGTGGCG TTTCCGGAACGGCTGCCGCTGGGCGGGCTCTCGGAACCGCATCAGTACAAGCTGCTGGGCATCATTACCCACCGA GGCGGCCATAACAGCGGCCACTACGAGGCGTTCCGGCGTCAGAACCAGTCGTTTCCGTATTCCAACGCAAACACT TTTCAGCCGTCCGAGGTGTACAGCAAGGCGCCAACACCCGTGTCGACGCCCAAGATGAAGGCTCGGCAGGCCGGC GGCAGTCCCGTCGCCTCGACGACGGACCTCCTCTCGTCGTCGGGGCCGGACGGGCCGACGGCGGAGCCTCCGCGC AGCCTGCCGGCCGAGGCGAGCTCGTCGCAGAACGCGGCACCGGCCGAGAGGAGGGAAGGGAACGGCGACGGGGGC AGCCTGCGATCCGTGGCCGCGTCCACCAAGTCGGCCCTGTCCAAGCTGACGGCGCCCAAACAAGGGCAGGACGGC GGCGGCTCGTCATCCCTGAGAAGCCTCAAGACATCGCAAACGGCGACGGCTCGTCGGGCCAAGAAGCGCAAGCCG ACGTCGGACAAATGGTGGCGCGTCAGCGACGAAAAAGTGCGCGAGACCAAGACGAGCGAGGTGCTGGGCATGCAA CGGGAGGTGTACATGCTATTCTACGAGTTGGATGATTAG |